fix(cli): only match <!-- gitnexus:* --> markers at section position (#1041) (#1042)

`upsertGitNexusSection` in ai-context.ts uses `indexOf` to locate the
bounds of the GitNexus section in CLAUDE.md / AGENTS.md before
replacement. `indexOf` matches the first occurrence of the marker
anywhere in the file, including inline prose references in backtick-
quoted fragments mid-sentence.

The shipped CLAUDE.md contains exactly such a reference ("See the
`<!-- gitnexus:start --> … <!-- gitnexus:end -->` block in AGENTS.md
for the canonical MCP tools..."). Running `gitnexus analyze` on a
fresh install matches those inline markers as section delimiters and
replaces the prose between them with the full ~100-line injected
block, breaking the backtick and corrupting markdown for every user.

Fix: new private `findSectionMarkerIndex` helper that only matches
markers occupying their own line — preceded by `\n` or start-of-file,
followed by `\n` / `\r` (CRLF files) / end-of-file. `\r` is explicit
so CRLF-terminated sections on Windows (core.autocrlf = true) still
match. The generator always emits markers alone on their line, so
every legitimate section continues to update in place; only inline
prose references now fall through to the append branch, which leaves
existing content untouched.

Two new unit tests:
- #1041 regression — seed CLAUDE.md with the shipped inline prose
  line, run analyze twice, assert inline prose preserved verbatim
  and marker counts stay at 2/2 (1 inline + 1 section-position)
- CRLF handling — seed a CRLF file with inline prose + legitimate
  section, run analyze, assert section replaced in place, inline
  prose preserved, stale stub content removed

No destructive ops, no bypass flags, no new deps. Behaviour change
is strictly narrowing — files that previously updated correctly
still do; files that previously got corrupted now fall through to
the safer append branch.

Closes #1041.

.cursor/.gitignore

@@ -0,0 +1 @@
+plans/

.dockerignore

@@ -0,0 +1,21 @@
+.git
+.gitignore
+.DS_Store
+
+node_modules
+**/node_modules
+
+dist
+**/dist
+coverage
+**/coverage
+
+.env
+.env.local
+.env.*.local
+
+**/*.tsbuildinfo
+
+.gitnexus
+gitnexus-web/playwright-report
+gitnexus-web/test-results

.env.example

@@ -0,0 +1,15 @@
+# Images (signed Cosign keyless on every push from main / vX.Y.Z tags)
+SERVER_IMAGE=ghcr.io/abhigyanpatwari/gitnexus:latest
+WEB_IMAGE=ghcr.io/abhigyanpatwari/gitnexus-web:latest
+
+# Container names
+SERVER_CONTAINER_NAME=gitnexus-server
+WEB_CONTAINER_NAME=gitnexus-web
+
+# Host ports — the web UI expects the server on http://localhost:4747 by default.
+SERVER_HOST_PORT=4747
+WEB_HOST_PORT=4173
+
+# Optional read-only mount, exposed to the server as /workspace.
+# Override with the directory that contains the repos you want to index.
+WORKSPACE_DIR=./

.github/scripts/check-workflow-concurrency.py

@@ -11,10 +11,14 @@ Rules:
      `concurrency:` block.
   2. Reusable workflows (on: workflow_call ONLY) do NOT declare one.
   3. The `concurrency.group` expression MUST reference either
-     `${{ github.workflow }}` or a literal `CI-` prefix (the documented
-     ci.yml reusable-workflow-safe exception). This is checked by substring
-     containment rather than prefix match because ci.yml's group is a
-     conditional expression that resolves to a `CI-…` literal at runtime.
+     `${{ github.workflow }}` or one of the approved hardcoded literal prefixes
+     for workflows that are simultaneously entry-points AND reusable (on: push/
+     workflow_call). Two such exceptions are currently approved:
+       - `CI-` for ci.yml (the original canonical form)
+       - `docker-build-push-` for docker.yml
+     This is checked by substring containment rather than prefix match because
+     the group value is a conditional expression that resolves to a `CI-…` or
+     `docker-build-push-…` literal at runtime.
 
 We deliberately do not use a YAML library — keeps the script dependency-free
 on any vanilla runner. `on:` block parsing is line-based and handles both the
@@ -28,7 +32,7 @@ import re
 import sys
 
 
-REQUIRED_TOKENS = ("${{ github.workflow }}", "CI-")
+REQUIRED_TOKENS = ("${{ github.workflow }}", "CI-", "docker-build-push-")
 
 
 def is_reusable(lines: list[str]) -> bool:
@@ -150,8 +154,10 @@ def check(workflows_dir: pathlib.Path) -> int:
         if not any(token in group for token in REQUIRED_TOKENS):
             print(
                 f"::error file={path}::concurrency.group `{group}` must "
-                f"reference one of {REQUIRED_TOKENS}. See CONTRIBUTING.md -> "
-                "GitHub Actions — Concurrency Convention."
+                f"reference one of {REQUIRED_TOKENS} (use ${{{{ github.workflow }}}} "
+                "for normal entry-point workflows; use an approved literal prefix "
+                "only for workflows that are both entry-points AND reusable — "
+                "see CONTRIBUTING.md -> GitHub Actions — Concurrency Convention)."
             )
             fail = 1
 

.github/workflows/ci-quality.yml

@@ -9,7 +9,7 @@ jobs:
     timeout-minutes: 5
     steps:
       - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
-      - uses: actions/setup-node@53b83947a5a98c8d113130e565377fae1a50d02f # v6.3.0
+      - uses: actions/setup-node@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e # v6.4.0
         with:
           node-version: 20
           cache: npm
@@ -22,7 +22,7 @@ jobs:
     timeout-minutes: 10
     steps:
       - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
-      - uses: actions/setup-node@53b83947a5a98c8d113130e565377fae1a50d02f # v6.3.0
+      - uses: actions/setup-node@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e # v6.4.0
         with:
           node-version: 20
           cache: npm

.github/workflows/ci-scope-parity.yml

@@ -0,0 +1,109 @@
+name: Scope Resolution Parity
+
+# Reusable workflow — called from ci.yml. Does NOT declare concurrency;
+# it inherits the caller's concurrency group per the convention documented
+# in CONTRIBUTING.md → "GitHub Actions — Concurrency Convention".
+#
+# ── Purpose (RFC #909 Ring 3, §6.4 "Observability gates") ──────────────
+# For every language in `MIGRATED_LANGUAGES` (exported from
+# `gitnexus/src/core/ingestion/registry-primary-flag.ts`), run the
+# resolver integration test at `test/integration/resolvers/<slug>.test.ts`
+# TWICE on every PR:
+#
+#   1. `REGISTRY_PRIMARY_<LANG>=0` — legacy DAG path (guarantees we haven't
+#      broken the old path while migrating).
+#   2. `REGISTRY_PRIMARY_<LANG>=1` — registry-primary path (guarantees the
+#      new path carries the same behavior — the parity gate).
+#
+# BOTH must pass. The source of truth is the TypeScript constant — adding
+# a language to that `Set` is the ONLY contributor action; CI auto-
+# discovers it, runs parity, and the language's default production path
+# flips to registry-primary in the same change.
+#
+# When the set is empty (e.g. mid-Ring-3 for every language), the parity
+# matrix is skipped and the workflow reports success — no-op until a
+# language is explicitly claimed migrated.
+
+on:
+  workflow_call:
+
+jobs:
+  discover:
+    name: Discover migrated languages
+    runs-on: ubuntu-latest
+    timeout-minutes: 5
+    outputs:
+      languages: ${{ steps.read.outputs.languages }}
+      has-any: ${{ steps.read.outputs.has-any }}
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+      - uses: ./.github/actions/setup-gitnexus
+
+      - name: Extract MIGRATED_LANGUAGES from registry-primary-flag.ts
+        id: read
+        shell: bash
+        working-directory: gitnexus
+        run: |
+          set -euo pipefail
+          # `tsx` evaluates the TS source directly (no build step), imports
+          # the exported `Set`, and emits a GH-Actions-friendly JSON matrix.
+          LANGS=$(npx tsx scripts/ci-list-migrated-languages.ts)
+          COUNT=$(printf '%s' "$LANGS" | jq 'length')
+          HAS_ANY="false"
+          if [[ "$COUNT" -gt 0 ]]; then HAS_ANY="true"; fi
+          echo "languages=$LANGS" >> "$GITHUB_OUTPUT"
+          echo "has-any=$HAS_ANY" >> "$GITHUB_OUTPUT"
+          echo "Discovered $COUNT migrated language(s): $LANGS"
+          echo "Parity matrix will run: $HAS_ANY"
+
+  parity:
+    name: ${{ matrix.lang.slug }} parity
+    needs: discover
+    if: needs.discover.outputs.has-any == 'true'
+    runs-on: ubuntu-latest
+    timeout-minutes: 20
+    strategy:
+      # One language failing must not abort the others — we want the full
+      # parity matrix result on a single CI run so a reviewer sees every
+      # regression at once rather than one-at-a-time.
+      fail-fast: false
+      matrix:
+        lang: ${{ fromJSON(needs.discover.outputs.languages) }}
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+      - uses: ./.github/actions/setup-gitnexus
+        with:
+          build: 'true'
+
+      - name: Verify resolver test file exists
+        shell: bash
+        working-directory: gitnexus
+        run: |
+          set -euo pipefail
+          TEST_FILE="test/integration/resolvers/${{ matrix.lang.slug }}.test.ts"
+          if [[ ! -f "$TEST_FILE" ]]; then
+            echo "::error title=Missing resolver test::\
+          Expected $TEST_FILE for '${{ matrix.lang.slug }}' (listed in \
+          MIGRATED_LANGUAGES). Either fix the slug or add the test file \
+          before listing this language as migrated."
+            exit 1
+          fi
+
+      - name: Resolver tests — legacy DAG (REGISTRY_PRIMARY_${{ matrix.lang.envvar }}=0)
+        shell: bash
+        working-directory: gitnexus
+        env:
+          FLAG_NAME: REGISTRY_PRIMARY_${{ matrix.lang.envvar }}
+        # Explicitly force the flag to `0` even though it also defaults to
+        # `MIGRATED_LANGUAGES.has(lang)` — once a language is in the set,
+        # the default flips to registry-primary, so an unset env var would
+        # silently re-run the same path as step #2. `env FOO=0 cmd` spawns
+        # `cmd` with the override scoped to just this invocation.
+        run: env "$FLAG_NAME=0" npx vitest run "test/integration/resolvers/${{ matrix.lang.slug }}.test.ts"
+
+      - name: Resolver tests — registry-primary (REGISTRY_PRIMARY_${{ matrix.lang.envvar }}=1)
+        shell: bash
+        working-directory: gitnexus
+        env:
+          FLAG_NAME: REGISTRY_PRIMARY_${{ matrix.lang.envvar }}
+        run: env "$FLAG_NAME=1" npx vitest run "test/integration/resolvers/${{ matrix.lang.slug }}.test.ts"

.github/workflows/ci-tests.yml

@@ -41,6 +41,9 @@ jobs:
           --outputFile=web-test-results.json
         working-directory: gitnexus-web
 
+      - name: Run docker-server integration tests
+        run: node --test docker-server.test.mjs
+
       - name: Upload test reports
         if: always()
         uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1

.github/workflows/ci.yml

@@ -29,6 +29,8 @@ concurrency:
 #   ci-quality.yml       — typecheck (tsc --noEmit)
 #   ci-tests.yml         — unit + integration tests with coverage + cross-platform
 #   ci-e2e.yml           — E2E tests (only when gitnexus-web/ changes)
+#   ci-scope-parity.yml  — RFC #909 Ring 3 parity gate: legacy DAG + registry-primary
+#                          both pass, per migrated language in the JSON registry
 #
 # Shared setup is DRY via .github/actions/setup-gitnexus composite action.
 
@@ -48,6 +50,11 @@ jobs:
     permissions:
       contents: read
 
+  scope-parity:
+    uses: ./.github/workflows/ci-scope-parity.yml
+    permissions:
+      contents: read
+
   # ── Save PR metadata for the reporting workflow ─────────────────
   # The ci-report.yml workflow (triggered by workflow_run) needs the
   # PR number and job results to post a comment.  We save them as an
@@ -56,7 +63,7 @@ jobs:
   save-pr-meta:
     name: Save PR Metadata
     if: always() && github.event_name == 'pull_request'
-    needs: [quality, tests, e2e]
+    needs: [quality, tests, e2e, scope-parity]
     runs-on: ubuntu-latest
     timeout-minutes: 5
     steps:
@@ -67,12 +74,14 @@ jobs:
           QUALITY: ${{ needs.quality.result }}
           TESTS: ${{ needs.tests.result }}
           E2E: ${{ needs.e2e.result }}
+          SCOPE_PARITY: ${{ needs.scope-parity.result }}
         run: |
           mkdir -p pr-meta
-          echo "$PR_NUMBER"  > pr-meta/pr_number
-          echo "$QUALITY"    > pr-meta/quality_result
-          echo "$TESTS"      > pr-meta/tests_result
-          echo "$E2E"        > pr-meta/e2e_result
+          echo "$PR_NUMBER"      > pr-meta/pr_number
+          echo "$QUALITY"        > pr-meta/quality_result
+          echo "$TESTS"          > pr-meta/tests_result
+          echo "$E2E"            > pr-meta/e2e_result
+          echo "$SCOPE_PARITY"   > pr-meta/scope_parity_result
           # TODO(post-merge): remove backward-compat copies once ci-report.yml
           # on main reads underscore names.
           # Backward-compat: ci-report.yml on main still reads hyphenated
@@ -95,7 +104,7 @@ jobs:
   # Single required check for branch protection.
   ci-status:
     name: CI Gate
-    needs: [quality, tests, e2e]
+    needs: [quality, tests, e2e, scope-parity]
     if: always()
     runs-on: ubuntu-latest
     timeout-minutes: 5
@@ -106,10 +115,12 @@ jobs:
           QUALITY: ${{ needs.quality.result }}
           TESTS: ${{ needs.tests.result }}
           E2E: ${{ needs.e2e.result }}
+          SCOPE_PARITY: ${{ needs.scope-parity.result }}
         run: |
           echo "Quality:        $QUALITY"
           echo "Tests:          $TESTS"
           echo "E2E:            $E2E"
+          echo "Scope parity:   $SCOPE_PARITY"
           if [[ "$QUALITY" != "success" ]] ||
              [[ "$TESTS" != "success" ]]; then
             echo "::error::Quality or test jobs failed"
@@ -119,3 +130,14 @@ jobs:
             echo "::error::E2E job failed"
             exit 1
           fi
+          # scope-parity is a reusable workflow. With an empty migrated-
+          # languages list, its parity matrix is skipped and the outer
+          # workflow still reports `success`. If any entry's legacy-DAG or
+          # registry-primary run fails, the workflow reports `failure`.
+          # Accept only `success`; `skipped` would mean the entire
+          # discover job was skipped too (upstream failure), which should
+          # still block.
+          if [[ "$SCOPE_PARITY" != "success" ]]; then
+            echo "::error::Scope-resolution parity gate failed (RFC #909 Ring 3)"
+            exit 1
+          fi

.github/workflows/docker.yml

@@ -0,0 +1,202 @@
+name: Docker Build & Push
+
+on:
+  push:
+    tags:
+      - 'v*'
+  # No workflow_dispatch: publishing is exclusively tag-driven so that every
+  # signed image corresponds 1:1 to a published `gitnexus@X.Y.Z` on npm. A
+  # manual run from a branch ref would fail the version check below anyway.
+  workflow_call:
+    inputs:
+      tag:
+        description: >-
+          The full v-prefixed tag to build (e.g. v1.2.3-rc.1).
+          The tag must already exist in the repo and its tree must contain
+          a gitnexus/package.json whose version matches the tag.
+        required: true
+        type: string
+
+# Concurrency convention: see CONTRIBUTING.md → "GitHub Actions — Concurrency Convention".
+# Tag refs are unique per release, so distinct tags run in parallel.
+# Re-pushes of the same tag serialize. cancel-in-progress: false — never cancel a publish mid-flight.
+# Hardcoded `docker-build-push-` prefix (not `${{ github.workflow }}`) when invoked as a reusable
+# workflow: in called-workflow context `github.workflow` is ambiguous and could resolve to the
+# caller's name, sharing a concurrency group with the caller → deadlock.
+# Direct tag-push invocations use `docker-build-push-<ref>`; workflow_call invocations get a
+# per-run-unique group (they are already serialized by the caller's own concurrency group).
+concurrency:
+  group: ${{ (github.event_name == 'push') && format('docker-build-push-{0}', github.ref) || format('docker-build-push-nested-{0}', github.run_id) }}
+  cancel-in-progress: false
+
+jobs:
+  build-push:
+    name: Build & Push ${{ matrix.image.name }}
+    runs-on: ubuntu-latest
+    timeout-minutes: 60
+    permissions:
+      contents: read
+      packages: write
+      # Required for Cosign keyless signing via the OIDC token exchange,
+      # and for build provenance / SBOM attestations.
+      id-token: write
+      attestations: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        image:
+          # Static UI bundle. Small, fast image. Drop-in replacement for the
+          # legacy single-image setup at the same `gitnexus` repository slug
+          # is intentionally avoided — the UI now lives at `gitnexus-web` and
+          # the CLI/server takes the canonical `gitnexus` slug below.
+          - name: gitnexus-web
+            dockerfile: Dockerfile.web
+            slug: gitnexus-web
+          # CLI / `gitnexus serve` backend. Heavy native deps (tree-sitter,
+          # onnxruntime-node) live only in this image.
+          - name: gitnexus
+            dockerfile: Dockerfile.cli
+            slug: gitnexus
+
+    steps:
+      - name: Validate tag input
+        if: github.event_name == 'workflow_call'
+        shell: bash
+        env:
+          TAG_INPUT: ${{ inputs.tag }}
+        run: |
+          if [ -z "${TAG_INPUT}" ]; then
+            echo "::error::No tag provided to docker.yml — refusing to build/push."
+            exit 1
+          fi
+
+      # When triggered by workflow_call the caller passes the RC tag as an input;
+      # we check out that tag so the Dockerfile and package.json match the built image.
+      # For tag-push events github.ref is already the tag ref — no override needed.
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+        with:
+          ref: ${{ inputs.tag || github.ref }}
+
+      # ── Lock the docker image version to the npm package version ──────────
+      # Mirrors the check in publish.yml: refuse to build unless the git tag
+      # exactly matches `gitnexus/package.json`'s version. This guarantees
+      # `ghcr.io/<owner>/gitnexus:X.Y.Z` always corresponds to the same
+      # `gitnexus@X.Y.Z` published to npm — no drift, no surprises.
+      - name: Verify tag matches gitnexus/package.json version
+        id: version
+        shell: bash
+        env:
+          # For workflow_call the tag comes from the caller input; for push events
+          # it is derived from GITHUB_REF (set to empty so the else-branch fires).
+          INPUT_TAG: ${{ inputs.tag }}
+        run: |
+          if [ -n "$INPUT_TAG" ]; then
+            TAG_VERSION="${INPUT_TAG#v}"
+          else
+            TAG_VERSION="${GITHUB_REF#refs/tags/v}"
+          fi
+          if ! [[ "$TAG_VERSION" =~ ^[0-9]+\.[0-9]+\.[0-9]+(-[a-zA-Z0-9.]+)?$ ]]; then
+            echo "::error::Tag does not follow semver: v$TAG_VERSION"
+            exit 1
+          fi
+          PKG_VERSION=$(node -p "require('./gitnexus/package.json').version")
+          if [ "$TAG_VERSION" != "$PKG_VERSION" ]; then
+            echo "::error::Tag version (v$TAG_VERSION) does not match gitnexus/package.json version ($PKG_VERSION)"
+            exit 1
+          fi
+          echo "version=$PKG_VERSION" >> "$GITHUB_OUTPUT"
+          echo "Version verified: $PKG_VERSION"
+
+      # Required for multi-platform (linux/arm64) emulation.
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@ce360397dd3f832beb865e1373c09c0e9f86d70a # v4.0.0
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@4d04d5d9486b7bd6fa91e7baf45bbb4f8b9deedd # v4.0.0
+
+      - name: Install Cosign
+        uses: sigstore/cosign-installer@cad07c2e89fa2edd6e2d7bab4c1aa38e53f76003 # v4.1.1
+
+      - name: Log in to GitHub Container Registry
+        uses: docker/login-action@4907a6ddec9925e35a0a9e82d7399ccc52663121 # v4.1.0
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      # Computes image tags and labels from the verified semver tag:
+      #   v1.2.3        → :1.2.3, :1.2, :1, :latest (auto, only for non-prerelease)
+      #   v1.2.3-rc.1   → :1.2.3-rc.1 only (prereleases never become :latest)
+      # `:latest` is only emitted for tag pushes thanks to `flavor: latest=auto`,
+      # ensuring it always points at a real npm-published version.
+      #
+      # For workflow_call invocations github.ref is the caller's branch ref, so
+      # the type=semver patterns would not match. In that case we add an explicit
+      # type=raw tag using the version already verified above, so the same
+      # image-naming rules apply regardless of how the workflow was triggered.
+      # NOTE: We check `inputs.tag` rather than `github.event_name` because in a
+      # reusable workflow the github context is inherited from the caller —
+      # `github.event_name` would still be "push", not "workflow_call".
+      - name: Extract Docker metadata
+        id: meta
+        uses: docker/metadata-action@030e881283bb7a6894de51c315a6bfe6a94e05cf # v6.0.0
+        with:
+          images: ghcr.io/${{ github.repository_owner }}/${{ matrix.image.slug }}
+          flavor: latest=auto
+          tags: |
+            type=semver,pattern={{version}}
+            type=semver,pattern={{major}}.{{minor}}
+            type=semver,pattern={{major}}
+            type=raw,value=${{ steps.version.outputs.version }},enable=${{ inputs.tag != '' }}
+
+      - name: Build and push
+        id: build
+        uses: docker/build-push-action@bcafcacb16a39f128d818304e6c9c0c18556b85f # v7.1.0
+        with:
+          context: .
+          file: ${{ matrix.image.dockerfile }}
+          platforms: linux/amd64,linux/arm64
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+          cache-from: type=gha,scope=${{ matrix.image.slug }}
+          cache-to: type=gha,mode=max,scope=${{ matrix.image.slug }}
+          provenance: mode=max
+          sbom: true
+
+      # Cosign keyless signing. Each pushed tag is signed by the workflow's
+      # OIDC identity, so consumers can verify the image with the strict,
+      # fully-anchored identity regex (kept in sync with README.md and
+      # deploy/kubernetes/cluster-image-policy.yaml — update all three together).
+      # NOTE: `${...}` expression syntax is NOT evaluated inside YAML comments, so
+      # the example below uses literal `<owner>/<repo>` placeholders that consumers
+      # substitute themselves; the canonical, fully-rendered command lives in README.md.
+      #   cosign verify ghcr.io/<owner>/<slug>:<tag> \
+      #     --certificate-identity-regexp '^https://github\.com/<owner>/<repo>/\.github/workflows/docker\.yml@refs/tags/v[0-9]+\.[0-9]+\.[0-9]+(-[a-zA-Z0-9.]+)?$' \
+      #     --certificate-oidc-issuer https://token.actions.githubusercontent.com
+      # Do NOT relax to `@.*` — that accepts signatures from any ref, including
+      # unprotected branches and PRs, and defeats the supply-chain guarantee.
+      - name: Sign image with Cosign (keyless)
+        env:
+          # Cosign v2 (installed by sigstore/cosign-installer above) makes
+          # keyless the default. COSIGN_EXPERIMENTAL is a v1-only opt-in flag
+          # that is now deprecated/no-op, so it is intentionally omitted.
+          DIGEST: ${{ steps.build.outputs.digest }}
+          TAGS: ${{ steps.meta.outputs.tags }}
+        run: |
+          # Sign every tag at the same digest so consumers can verify by tag or by digest.
+          # Use `while read` instead of `for $TAGS` to be robust against tags that
+          # could ever contain whitespace (the metadata-action output is newline-
+          # separated, not space-separated).
+          while IFS= read -r tag; do
+            [[ -n "$tag" ]] && cosign sign --yes "${tag}@${DIGEST}"
+          done <<< "$TAGS"
+
+      # Attach the SBOM produced by buildx as a verifiable attestation on the digest.
+      - name: Generate build provenance attestation
+        uses: actions/attest-build-provenance@a2bbfa25375fe432b6a289bc6b6cd05ecd0c4c32 # v4.1.0
+        with:
+          subject-name: ghcr.io/${{ github.repository_owner }}/${{ matrix.image.slug }}
+          subject-digest: ${{ steps.build.outputs.digest }}
+          push-to-registry: true

.github/workflows/publish.yml

@@ -33,7 +33,7 @@ jobs:
       id-token: write
     steps:
       - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
-      - uses: actions/setup-node@53b83947a5a98c8d113130e565377fae1a50d02f # v6.3.0
+      - uses: actions/setup-node@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e # v6.4.0
         with:
           node-version: 20
           registry-url: https://registry.npmjs.org

.github/workflows/release-candidate.yml

@@ -125,13 +125,15 @@ jobs:
     permissions:
       contents: write # push rc tag + marker
       id-token: write # npm provenance
+    outputs:
+      vtag: ${{ steps.reltag.outputs.vtag }}
     steps:
       - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
         with:
           fetch-depth: 0
           fetch-tags: true
 
-      - uses: actions/setup-node@53b83947a5a98c8d113130e565377fae1a50d02f # v6.3.0
+      - uses: actions/setup-node@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e # v6.4.0
         with:
           node-version: 20
           registry-url: https://registry.npmjs.org
@@ -364,3 +366,23 @@ jobs:
 
             Release candidates are pre-stable builds intended for early testing.
             Stable releases remain on the `latest` dist-tag.
+
+  # ── Build & push RC Docker images ────────────────────────────────────
+  # Calls docker.yml as a reusable workflow so that the build, signing, and
+  # attestation logic stays in one place. The publish job exposes `vtag`
+  # (e.g. `v1.2.3-rc.1`) as an output so we can pass it as the tag input.
+  # RC images are signed with Cosign keyless signing; the OIDC identity
+  # will be `docker.yml@refs/heads/main` (the caller's ref) rather than a
+  # tag ref — see README.md § Docker for the correct verify command for RCs.
+  docker:
+    name: Build & Push RC Docker images
+    needs: [guard, publish]
+    if: needs.guard.outputs.should_run == 'true' && needs.publish.outputs.vtag != ''
+    uses: ./.github/workflows/docker.yml
+    permissions:
+      contents: read
+      packages: write
+      id-token: write
+      attestations: write
+    with:
+      tag: ${{ needs.publish.outputs.vtag }}

.gitignore

@@ -23,6 +23,7 @@ Thumbs.db
 .env
 .env.local
 .env.*.local
+docker/.env
 
 # Logs
 *.log
@@ -102,3 +103,6 @@ gitnexus/vendor/**/node_modules/
 
 local_docs/
 
+# Local agent scratch / review prompts (never commit)
+.tmp/
+.agents/

AGENTS.md

@@ -1,7 +1,7 @@
-<!-- version: 1.4.0 -->
-<!-- Last updated: 2026-04-16 -->
+<!-- version: 1.6.0 -->
+<!-- Last updated: 2026-04-20 -->
 
-Last reviewed: 2026-04-16
+Last reviewed: 2026-04-20
 
 **Project:** GitNexus · **Environment:** dev · **Maintainer:** repository maintainers (see GitHub)
 
@@ -39,6 +39,8 @@ Commands and gotchas live under **Repo reference** below and in **[CONTRIBUTING.
 ## Reference docs
 
 - **[ARCHITECTURE.md](ARCHITECTURE.md)**, **[CONTRIBUTING.md](CONTRIBUTING.md)**, **[GUARDRAILS.md](GUARDRAILS.md)**
+- **Call-resolution DAG (legacy path):** See ARCHITECTURE.md § Call-Resolution DAG. Typed 6-stage DAG inside the `parse` phase; language-specific behavior behind `inferImplicitReceiver` / `selectDispatch` hooks on `LanguageProvider`. Shared code in `gitnexus/src/core/ingestion/` must not name languages. Types: `gitnexus/src/core/ingestion/call-types.ts`.
+- **Scope-resolution pipeline (RFC #909 Ring 3):** See ARCHITECTURE.md § Scope-Resolution Pipeline. Replaces the legacy DAG for languages in `MIGRATED_LANGUAGES` (currently Python). A language plugs in by implementing `ScopeResolver` (`scope-resolution/contract/scope-resolver.ts`) and registering it in `SCOPE_RESOLVERS`. CI parity gate runs BOTH paths per migrated language on every PR.
 - **Cursor:** `.cursor/index.mdc` (always-on); `.cursor/rules/*.mdc` (glob-scoped). Legacy `.cursorrules` deprecated.
 - **GitNexus:** skills in `.claude/skills/gitnexus/`; MCP rules in `gitnexus:start` block below.
 
@@ -46,6 +48,8 @@ Commands and gotchas live under **Repo reference** below and in **[CONTRIBUTING.
 
 | Date | Version | Change |
 |------|---------|--------|
+| 2026-04-20 | 1.6.0 | Added scope-resolution pipeline pointer (RFC #909 Ring 3); Python migrated to registry-primary. |
+| 2026-04-19 | 1.5.0 | Cross-repo impact (#794): `impact`/`query`/`context` accept `repo: "@<group>"` + `service`. Removed `group_query`/`group_contracts`/`group_status` MCP tools; added `gitnexus://group/{name}/contracts` and `gitnexus://group/{name}/status` resources. |
 | 2026-04-16 | 1.4.0 | Fixed: web UI description, pre-commit behavior, MCP tools (7->16), added gitnexus-shared, removed stale vite-plugin-wasm gotcha. |
 | 2026-04-13 | 1.3.0 | Updated GitNexus index stats after DAG refactor. |
 | 2026-03-24 | 1.2.0 | Fixed gitnexus:start block duplication. |
@@ -88,6 +92,7 @@ Indexed as **GitNexus** (4325 symbols, 10556 relationships, 300 execution flows)
 - Ignore HIGH/CRITICAL risk warnings.
 - Rename with find-and-replace — use `gitnexus_rename`.
 - Commit without `gitnexus_detect_changes()`.
+- Add language-specific behavior to shared ingestion code (`gitnexus/src/core/ingestion/`) — use a `LanguageProvider` hook. Seeing `provider.mroStrategy === 'xxx'` or an import from `languages/xxx.ts` in shared code means stop and add a hook.
 
 ## Tools Quick Reference
 
@@ -105,10 +110,14 @@ Indexed as **GitNexus** (4325 symbols, 10556 relationships, 300 execution flows)
 | `tool_map` | MCP/RPC tool definitions | `gitnexus_tool_map({})` |
 | `shape_check` | Response shape vs consumer access | `gitnexus_shape_check({route: "/api/users"})` |
 | `group_list` | List repo groups | `gitnexus_group_list({})` |
-| `group_query` | Cross-repo search in a group | `gitnexus_group_query({name: "myGroup", query: "auth"})` |
 | `group_sync` | Rebuild group Contract Registry | `gitnexus_group_sync({name: "myGroup"})` |
-| `group_contracts` | Inspect group contracts | `gitnexus_group_contracts({name: "myGroup"})` |
-| `group_status` | Group staleness report | `gitnexus_group_status({name: "myGroup"})` |
+| `query` (group mode) | Cross-repo search in a group (RRF-merged) | `gitnexus_query({repo: "@myGroup", query: "auth"})` |
+| `context` (group mode) | 360° view across all member repos | `gitnexus_context({repo: "@myGroup", name: "validateUser"})` |
+| `impact` (group mode) | Cross-repo blast radius via Contract Bridge | `gitnexus_impact({repo: "@myGroup", target: "X", direction: "upstream"})` |
+
+> Group mode: pass `repo: "@<groupName>"` to fan out across all member repos, or `repo: "@<groupName>/<memberPath>"` to target a single member (path keys from `group.yaml`). Optional `service: "<monorepo/path>"` filters by service root. Group-level state (contracts, staleness) lives in the resources table below — there are **no** `group_query` / `group_context` / `group_impact` / `group_contracts` / `group_status` MCP tools.
+>
+> For a full walkthrough of setting up a group across multiple repos that communicate over gRPC, see [docs/guides/microservices-grpc.md](docs/guides/microservices-grpc.md).
 
 ## Impact Risk Levels
 
@@ -126,6 +135,8 @@ Indexed as **GitNexus** (4325 symbols, 10556 relationships, 300 execution flows)
 | `gitnexus://repo/GitNexus/clusters` | All functional areas |
 | `gitnexus://repo/GitNexus/processes` | All execution flows |
 | `gitnexus://repo/GitNexus/process/{name}` | Step-by-step execution trace |
+| `gitnexus://group/{name}/contracts` | Group Contract Registry (provider/consumer rows + cross-links) |
+| `gitnexus://group/{name}/status` | Per-member index + Contract Registry staleness report |
 
 ## Self-Check Before Finishing
 

ARCHITECTURE.md

@@ -42,10 +42,14 @@ Monorepo: **CLI/MCP** (`gitnexus/`) + **browser UI** (`gitnexus-web/`).
 | `tool_map` | MCP/RPC tool definitions and handlers |
 | `shape_check` | Response shape vs consumer property access mismatches |
 | `group_list` | List repo groups or details for one group |
-| `group_query` | Cross-repo search in a group (reciprocal rank fusion) |
-| `group_sync` | Rebuild group Contract Registry (`contracts.json`) |
-| `group_contracts` | Inspect group contracts and cross-links |
-| `group_status` | Index and Contract Registry staleness per repo in a group |
+| `group_sync` | Rebuild group Contract Registry (`contracts.json`) and bridge graph |
+
+`query`, `context`, and `impact` are group-aware: pass `repo: "@<groupName>"` (or `"@<groupName>/<memberPath>"` to scope to one member) plus optional `service: "<monorepo/path>"`. Group-mode `query` merges per-repo results via Reciprocal Rank Fusion; group-mode `impact` runs the local walk in the chosen member and fans out across boundaries via the Contract Bridge (`gitnexus/src/core/group/cross-impact.ts`). The previously-planned `group_query`, `group_context`, `group_impact`, `group_contracts`, `group_status` MCP tools are intentionally not introduced — group-level state is exposed via resources instead:
+
+| Resource URI | Purpose |
+|--------------|---------|
+| `gitnexus://group/{name}/contracts` | Contract Registry (provider/consumer rows + cross-links) |
+| `gitnexus://group/{name}/status` | Per-member index + Contract Registry staleness |
 
 ## Where to change what
 
@@ -55,6 +59,7 @@ Monorepo: **CLI/MCP** (`gitnexus/`) + **browser UI** (`gitnexus-web/`).
 | Parsing/graph construction | `src/core/ingestion/pipeline-phases/` + `pipeline.ts` |
 | Graph schema/DB | `src/core/lbug/` (`schema.ts`, `lbug-adapter.ts`) |
 | MCP tools/resources | `src/mcp/server.ts`, `tools.ts`, `resources.ts` |
+| Cross-repo groups (sync, contracts, `@<group>` routing) | `src/core/group/` (`service.ts`, `cross-impact.ts`, `sync.ts`, `bridge-db.ts`) |
 | Search ranking | `src/core/search/` (BM25, hybrid fusion) |
 | Embeddings | `src/core/embeddings/` + `src/core/run-analyze.ts` |
 | Wiki generation | `src/core/wiki/` |
@@ -142,6 +147,152 @@ export const myPhase: PipelinePhase<MyPhaseOutput> = {
 
 ---
 
+## Call-Resolution DAG
+
+Typed 6-stage pipeline in `call-processor.ts` (inside the `parse` phase) that resolves method/function calls and emits CALLS edges. Language behavior plugs in at two `LanguageProvider` hook points (stages 3–4); shared code names no languages. Scope: call resolution only — import resolution, type extraction, heritage, and symbol-table population live in other phases.
+
+### Stages
+
+```
+extract-call ──▶ classify-form ──▶ infer-receiver ──▶ select-dispatch ──▶ resolve-target ──▶ emit-edge
+     (1)              (2)            (3)  [hook]       (4)  [hook]         (5)                 (6)
+```
+
+| Stage | Produces | Location |
+|-------|----------|----------|
+| **extract-call** | `ExtractedCallSite` (name, form, receiver, argCount) | `call-extractors/` (per-language); runs in worker |
+| **classify-form** | callForm (`free`/`member`/`constructor`) + arity | `call-analysis.ts` → `inferCallForm`; shared, runs in worker |
+| **infer-receiver** | `ReceiverEnriched` (receiver type finalized) | `call-processor.ts`; shared default chain, then `inferImplicitReceiver` hook |
+| **select-dispatch** | `DispatchDecision` (primary, fallback, ancestryView) | `selectDispatch` hook, falls back to shared default |
+| **resolve-target** | `TieredCandidates` | `model/resolve.ts` → `lookupMethodByOwnerWithMRO` (MRO walk) |
+| **emit-edge** | CALLS edge in graph | `call-processor.ts`; writes edge with confidence tier |
+
+### Provider hooks
+
+Both hooks are optional on `LanguageProvider`. Ruby is the only current implementer.
+
+**`inferImplicitReceiver`** — called after shared infer-receiver defaults. Returns `ImplicitReceiverOverride | null`.
+
+| | |
+|---|---|
+| Inputs | `calledName`, `callForm`, `receiverName`, `receiverTypeName`, `callNode` (AST), `filePath` |
+| Non-null fields | `callForm`, `receiverName`, `receiverTypeName` (required); `receiverSource: 'implicit-self'` (fixed); `hint?` (opaque, passed to `selectDispatch`) |
+| Null | Keep existing `ReceiverEnriched` state |
+
+**`selectDispatch`** — called after infer-receiver (including hook). Returns `DispatchDecision | null`; null uses shared default (constructor → `primary:'constructor'`; typed receiver → `primary:'owner-scoped'`; else → `primary:'free'`).
+
+| | |
+|---|---|
+| Inputs | `calledName`, `callForm`, `receiverName`, `receiverTypeName`, `receiverSource`, `hint` |
+| Non-null fields | `primary: 'owner-scoped' \| 'free' \| 'constructor'`; `fallback?: 'free-arity-narrowed'`; `ancestryView?: 'instance' \| 'singleton'`; `hint?` |
+
+**`DispatchDecision` field semantics:**
+- `primary: 'owner-scoped'` — MRO walk from receiver's type; used when receiver type is known.
+- `fallback: 'free-arity-narrowed'` — after owner-scoped miss, search free-call candidates by arity only (Ruby uses this for implicit-self calls that miss their owner's MRO).
+- `ancestryView: 'singleton'` — walk singleton/class ancestry instead of instance ancestry (Ruby `def self.foo` bodies, so `extend`-ed methods are found).
+
+### Adding language behavior
+
+1. **Implicit receivers** — implement `inferImplicitReceiver`: return null if call already has a receiver; otherwise use `findEnclosingClassInfo` (`ast-helpers.ts`) to find the enclosing context, return `ImplicitReceiverOverride` with `receiverSource: 'implicit-self'`, and optionally set `hint` for `selectDispatch`.
+2. **Custom dispatch** — implement `selectDispatch`: inspect `receiverSource` and `hint`, return `DispatchDecision` with `primary`, optional `fallback`, optional `ancestryView`; return null to keep shared defaults.
+3. **MRO strategy** — confirm `mroStrategy` is `'first-wins'`, `'c3'`, `'ruby-mixin'`, or `'none'`; consumed by `lookupMethodByOwnerWithMRO`.
+
+**Ruby example** (`languages/ruby.ts` + `utils/ruby-self-call.ts`): `inferImplicitReceiver` rewrites bare-identifier calls to `self.method` and sets `hint` to `'instance'`/`'singleton'`; `selectDispatch` uses hint for `ancestryView` and adds `fallback: 'free-arity-narrowed'` for implicit-self calls.
+
+### Code references
+
+| Module | Purpose |
+|--------|---------|
+| `core/ingestion/call-types.ts` | DAG types: `ReceiverEnriched`, `DispatchDecision`, `ImplicitReceiverOverride` |
+| `core/ingestion/language-provider.ts` | Hook signatures: `inferImplicitReceiver`, `selectDispatch` |
+| `core/ingestion/call-processor.ts` | `processCalls`: stages 3–6 |
+| `core/ingestion/model/resolve.ts` | `lookupMethodByOwnerWithMRO`: stage 5 MRO walk |
+| `core/ingestion/languages/ruby.ts` | Both hooks + `mroStrategy: 'ruby-mixin'` |
+| `core/ingestion/utils/ruby-self-call.ts` | Bare-call rewrite for `inferImplicitReceiver` |
+
+### Coexistence with the scope-resolution pipeline
+
+The Call-Resolution DAG is the **legacy path**. RFC #909 Ring 3 introduces a parallel **scope-resolution pipeline** (next section) that replaces stages 1–6 with a scope-indexed registry lookup. Both paths ship side-by-side and are gated per-language via `MIGRATED_LANGUAGES` + the `REGISTRY_PRIMARY_<LANG>` env var.
+
+- **Unmigrated language** → Call-Resolution DAG runs; scope-resolution phase is a no-op.
+- **Migrated language** (currently: Python) → scope-resolution owns CALLS/ACCESSES/USES emission; the legacy DAG gates off for that language via `isRegistryPrimary(lang)` checks in `call-processor.ts` and `import-processor.ts`.
+- `import-processor` still populates `importMap` for migrated languages — heritage's `ctx.resolve` reads it to disambiguate parent classes. Only edge emission is gated.
+- CI runs BOTH paths for every migrated language on every PR (`.github/workflows/ci-scope-parity.yml`); both must pass.
+
+---
+
+## Scope-Resolution Pipeline (RFC #909 Ring 3)
+
+Language-agnostic registry-primary resolver. Replaces the Call-Resolution DAG for migrated languages. Adding a language is one interface implementation (`ScopeResolver`) plus two registrations — no changes to shared code, no new pipeline phase.
+
+### Pipeline stages
+
+```
+ ParsedFile[]  (extractParsedFile per file)
+    │  finalizeScopeModel (+ provider hooks)
+    ▼
+ ScopeResolutionIndexes
+    │  resolveReferenceSites  (via MethodRegistry.lookup)
+    ▼
+ ReferenceIndex
+    │  emitReceiverBoundCalls  ── FIRST
+    │  emitFreeCallFallback    ── THEN
+    │  emitReferencesViaLookup ── LAST (uses handledSites)
+    │  emitImportEdges
+    ▼
+ KnowledgeGraph  (IMPORTS / CALLS / ACCESSES / INHERITS / USES)
+```
+
+Orchestrator: `runScopeResolution(input, provider)` in `scope-resolution/pipeline/run.ts`.
+Pipeline phase: `scopeResolutionPhase` in `scope-resolution/pipeline/phase.ts` — iterates `SCOPE_RESOLVERS ∩ MIGRATED_LANGUAGES`, reads per-file Trees from the parse phase's `scopeTreeCache`, disposes the cache at the end.
+
+### `ScopeResolver` contract
+
+Single interface a language implements to plug into the pipeline. Contract fully documented in `scope-resolution/contract/scope-resolver.ts`.
+
+| Hook | Purpose |
+|------|---------|
+| `languageProvider` | Base `LanguageProvider` (tree-sitter query, `emitScopeCaptures`, import/binding interpreters, hooks) |
+| `populateOwners(parsed)` | Fill deferred `ownerId` fields on method defs (captures can't always know the owning class at parse time) |
+| `buildMro(graph, parsed, nodeLookup)` | Produce `mroByClassDefId: Map<DefId, DefId[]>` — C3, Ruby-mixin, or first-wins per language |
+| `resolveImportTarget(target, fromFile, allFiles)` | `(rawImportPath, sourceFile) → targetFilePath` (PEP-328 for Python, etc.) |
+| `mergeBindings(existing, incoming, scopeId)` | Shadowing / LEGB precedence |
+| `arityCompatibility` | Provider consumed by registry during `MethodRegistry.lookup` Step 2 |
+| `importEdgeReason` | Confidence-tier string for IMPORTS edge reason field |
+| `propagatesReturnTypesAcrossImports?` | Opt out of cross-file return-type propagation (default on) |
+
+### Per-language registration
+
+1. Implement `ScopeResolver` in `languages/<lang>/scope-resolver.ts`.
+2. Add entry to `SCOPE_RESOLVERS` in `scope-resolution/pipeline/registry.ts`.
+3. Add the language to `MIGRATED_LANGUAGES` in `registry-primary-flag.ts` when the shadow-harness corpus parity ≥ 99% fixtures / ≥ 98% corpus.
+
+CI auto-discovers the set via `tsx`. No workflow edit required.
+
+### Code references
+
+| Module | Purpose |
+|--------|---------|
+| `scope-resolution/contract/scope-resolver.ts` | `ScopeResolver` interface + shared types |
+| `scope-resolution/pipeline/run.ts` | Generic orchestrator |
+| `scope-resolution/pipeline/phase.ts` | Pipeline-phase wrapper (deps: `parse`, `structure`) |
+| `scope-resolution/pipeline/registry.ts` | `SCOPE_RESOLVERS` map |
+| `scope-resolution/passes/*.ts` | Reference-resolution passes (receiver-bound, free-call fallback, compound-receiver, MRO, cross-file return-type propagation) |
+| `scope-resolution/graph-bridge/*.ts` | CLI-local translation from resolved references → `KnowledgeGraph` edges |
+| `scope-resolution/scope/*.ts` | Generic scope-chain walkers + namespace targets |
+| `scope-resolution/workspace-index.ts` | Build-once O(1) lookup index |
+| `registry-primary-flag.ts` | `MIGRATED_LANGUAGES` set + `isRegistryPrimary(lang)` |
+| `languages/python/index.ts` | Python `ScopeResolver` hooks + known-limitation docs |
+| `languages/python/captures.ts` | `emitPythonScopeCaptures` (honors cross-phase Tree cache) |
+
+### Performance notes
+
+- **Cross-phase Tree cache**: parse phase writes Trees into `scopeTreeCache` (separate from the chunk-local `astCache`) ONLY for languages with `emitScopeCaptures`. Scope-resolution reads from it to skip the second parse. Cleared at end of the phase. Workers leave the cache empty — Trees can't cross MessageChannels; cache miss = fresh parse. `PROF_SCOPE_RESOLUTION=1` emits hit/miss counters and a worker-engaged warning.
+- **Typed relationship iteration**: heritage + MRO walk only the EXTENDS / IMPLEMENTS / HAS_METHOD edges via `iterRelationshipsByType`, not the full relationship map.
+- **Workspace-resolution-index**: O(1) `findOwnedMember` / `findExportedDef` / `classScopeByDefId` built once per run.
+
+---
+
 ## Language-agnostic graph feeding
 
 16 languages → single unified graph. Four abstraction layers:

CLAUDE.md

@@ -35,6 +35,7 @@ If always-on instructions grow, load deep conventions via conditional reads (e.g
 ## Reference Documentation
 
 - **This repository:** [AGENTS.md](AGENTS.md) (Cursor + monorepo notes), [ARCHITECTURE.md](ARCHITECTURE.md), [CONTRIBUTING.md](CONTRIBUTING.md), [GUARDRAILS.md](GUARDRAILS.md).
+- **Call-resolution DAG:** See ARCHITECTURE.md § Call-Resolution DAG. Shared pipeline code in `gitnexus/src/core/ingestion/` must not name languages — use `LanguageProvider` hooks instead (see AGENTS.md).
 - **GitNexus:** `.claude/skills/gitnexus/`; MCP and indexed-repo rules live only in [AGENTS.md](AGENTS.md) (`gitnexus:start` … `gitnexus:end`). See **GitNexus rules** below.
 
 ## Changelog
@@ -50,206 +51,4 @@ If always-on instructions grow, load deep conventions via conditional reads (e.g
 
 ## GitNexus rules
 
-GitNexus MCP rules are in the `<!-- gitnexus:start -->
-# GitNexus — Code Intelligence
-
-This project is indexed by GitNexus as **GitNexus** (4325 symbols, 10556 relationships, 300 execution flows). Use the GitNexus MCP tools to understand code, assess impact, and navigate safely.
-
-> If any GitNexus tool warns the index is stale, run `npx gitnexus analyze` in terminal first.
-
-## Always Do
-
-- **MUST run impact analysis before editing any symbol.** Before modifying a function, class, or method, run `gitnexus_impact({target: "symbolName", direction: "upstream"})` and report the blast radius (direct callers, affected processes, risk level) to the user.
-- **MUST run `gitnexus_detect_changes()` before committing** to verify your changes only affect expected symbols and execution flows.
-- **MUST warn the user** if impact analysis returns HIGH or CRITICAL risk before proceeding with edits.
-- When exploring unfamiliar code, use `gitnexus_query({query: "concept"})` to find execution flows instead of grepping. It returns process-grouped results ranked by relevance.
-- When you need full context on a specific symbol — callers, callees, which execution flows it participates in — use `gitnexus_context({name: "symbolName"})`.
-
-## When Debugging
-
-1. `gitnexus_query({query: "<error or symptom>"})` — find execution flows related to the issue
-2. `gitnexus_context({name: "<suspect function>"})` — see all callers, callees, and process participation
-3. `READ gitnexus://repo/GitNexus/process/{processName}` — trace the full execution flow step by step
-4. For regressions: `gitnexus_detect_changes({scope: "compare", base_ref: "main"})` — see what your branch changed
-
-## When Refactoring
-
-- **Renaming**: MUST use `gitnexus_rename({symbol_name: "old", new_name: "new", dry_run: true})` first. Review the preview — graph edits are safe, text_search edits need manual review. Then run with `dry_run: false`.
-- **Extracting/Splitting**: MUST run `gitnexus_context({name: "target"})` to see all incoming/outgoing refs, then `gitnexus_impact({target: "target", direction: "upstream"})` to find all external callers before moving code.
-- After any refactor: run `gitnexus_detect_changes({scope: "all"})` to verify only expected files changed.
-
-## Never Do
-
-- NEVER edit a function, class, or method without first running `gitnexus_impact` on it.
-- NEVER ignore HIGH or CRITICAL risk warnings from impact analysis.
-- NEVER rename symbols with find-and-replace — use `gitnexus_rename` which understands the call graph.
-- NEVER commit changes without running `gitnexus_detect_changes()` to check affected scope.
-
-## Tools Quick Reference
-
-| Tool | When to use | Command |
-|------|-------------|---------|
-| `query` | Find code by concept | `gitnexus_query({query: "auth validation"})` |
-| `context` | 360-degree view of one symbol | `gitnexus_context({name: "validateUser"})` |
-| `impact` | Blast radius before editing | `gitnexus_impact({target: "X", direction: "upstream"})` |
-| `detect_changes` | Pre-commit scope check | `gitnexus_detect_changes({scope: "staged"})` |
-| `rename` | Safe multi-file rename | `gitnexus_rename({symbol_name: "old", new_name: "new", dry_run: true})` |
-| `cypher` | Custom graph queries | `gitnexus_cypher({query: "MATCH ..."})` |
-
-## Impact Risk Levels
-
-| Depth | Meaning | Action |
-|-------|---------|--------|
-| d=1 | WILL BREAK — direct callers/importers | MUST update these |
-| d=2 | LIKELY AFFECTED — indirect deps | Should test |
-| d=3 | MAY NEED TESTING — transitive | Test if critical path |
-
-## Resources
-
-| Resource | Use for |
-|----------|---------|
-| `gitnexus://repo/GitNexus/context` | Codebase overview, check index freshness |
-| `gitnexus://repo/GitNexus/clusters` | All functional areas |
-| `gitnexus://repo/GitNexus/processes` | All execution flows |
-| `gitnexus://repo/GitNexus/process/{name}` | Step-by-step execution trace |
-
-## Self-Check Before Finishing
-
-Before completing any code modification task, verify:
-1. `gitnexus_impact` was run for all modified symbols
-2. No HIGH/CRITICAL risk warnings were ignored
-3. `gitnexus_detect_changes()` confirms changes match expected scope
-4. All d=1 (WILL BREAK) dependents were updated
-
-## Keeping the Index Fresh
-
-After committing code changes, the GitNexus index becomes stale. Re-run analyze to update it:
-
-```bash
-npx gitnexus analyze
-```
-
-If the index previously included embeddings, preserve them by adding `--embeddings`:
-
-```bash
-npx gitnexus analyze --embeddings
-```
-
-To check whether embeddings exist, inspect `.gitnexus/meta.json` — the `stats.embeddings` field shows the count (0 means no embeddings). **Running analyze without `--embeddings` will delete any previously generated embeddings.**
-
-> Claude Code users: A PostToolUse hook handles this automatically after `git commit` and `git merge`.
-
-## CLI
-
-| Task | Read this skill file |
-|------|---------------------|
-| Understand architecture / "How does X work?" | `.claude/skills/gitnexus/gitnexus-exploring/SKILL.md` |
-| Blast radius / "What breaks if I change X?" | `.claude/skills/gitnexus/gitnexus-impact-analysis/SKILL.md` |
-| Trace bugs / "Why is X failing?" | `.claude/skills/gitnexus/gitnexus-debugging/SKILL.md` |
-| Rename / extract / split / refactor | `.claude/skills/gitnexus/gitnexus-refactoring/SKILL.md` |
-| Tools, resources, schema reference | `.claude/skills/gitnexus/gitnexus-guide/SKILL.md` |
-| Index, status, clean, wiki CLI commands | `.claude/skills/gitnexus/gitnexus-cli/SKILL.md` |
-
-<!-- gitnexus:end -->`  block in **[AGENTS.md](AGENTS.md)** — load that section when working with MCP tools or the graph index.
-
-<!-- gitnexus:start -->
-# GitNexus — Code Intelligence
-
-This project is indexed by GitNexus as **GitNexus** (3298 symbols, 7954 relationships, 185 execution flows). Use the GitNexus MCP tools to understand code, assess impact, and navigate safely.
-
-> If any GitNexus tool warns the index is stale, run `npx gitnexus analyze` in terminal first.
-
-## Always Do
-
-- **MUST run impact analysis before editing any symbol.** Before modifying a function, class, or method, run `gitnexus_impact({target: "symbolName", direction: "upstream"})` and report the blast radius (direct callers, affected processes, risk level) to the user.
-- **MUST run `gitnexus_detect_changes()` before committing** to verify your changes only affect expected symbols and execution flows.
-- **MUST warn the user** if impact analysis returns HIGH or CRITICAL risk before proceeding with edits.
-- When exploring unfamiliar code, use `gitnexus_query({query: "concept"})` to find execution flows instead of grepping. It returns process-grouped results ranked by relevance.
-- When you need full context on a specific symbol — callers, callees, which execution flows it participates in — use `gitnexus_context({name: "symbolName"})`.
-
-## When Debugging
-
-1. `gitnexus_query({query: "<error or symptom>"})` — find execution flows related to the issue
-2. `gitnexus_context({name: "<suspect function>"})` — see all callers, callees, and process participation
-3. `READ gitnexus://repo/GitNexus/process/{processName}` — trace the full execution flow step by step
-4. For regressions: `gitnexus_detect_changes({scope: "compare", base_ref: "main"})` — see what your branch changed
-
-## When Refactoring
-
-- **Renaming**: MUST use `gitnexus_rename({symbol_name: "old", new_name: "new", dry_run: true})` first. Review the preview — graph edits are safe, text_search edits need manual review. Then run with `dry_run: false`.
-- **Extracting/Splitting**: MUST run `gitnexus_context({name: "target"})` to see all incoming/outgoing refs, then `gitnexus_impact({target: "target", direction: "upstream"})` to find all external callers before moving code.
-- After any refactor: run `gitnexus_detect_changes({scope: "all"})` to verify only expected files changed.
-
-## Never Do
-
-- NEVER edit a function, class, or method without first running `gitnexus_impact` on it.
-- NEVER ignore HIGH or CRITICAL risk warnings from impact analysis.
-- NEVER rename symbols with find-and-replace — use `gitnexus_rename` which understands the call graph.
-- NEVER commit changes without running `gitnexus_detect_changes()` to check affected scope.
-
-## Tools Quick Reference
-
-| Tool | When to use | Command |
-|------|-------------|---------|
-| `query` | Find code by concept | `gitnexus_query({query: "auth validation"})` |
-| `context` | 360-degree view of one symbol | `gitnexus_context({name: "validateUser"})` |
-| `impact` | Blast radius before editing | `gitnexus_impact({target: "X", direction: "upstream"})` |
-| `detect_changes` | Pre-commit scope check | `gitnexus_detect_changes({scope: "staged"})` |
-| `rename` | Safe multi-file rename | `gitnexus_rename({symbol_name: "old", new_name: "new", dry_run: true})` |
-| `cypher` | Custom graph queries | `gitnexus_cypher({query: "MATCH ..."})` |
-
-## Impact Risk Levels
-
-| Depth | Meaning | Action |
-|-------|---------|--------|
-| d=1 | WILL BREAK — direct callers/importers | MUST update these |
-| d=2 | LIKELY AFFECTED — indirect deps | Should test |
-| d=3 | MAY NEED TESTING — transitive | Test if critical path |
-
-## Resources
-
-| Resource | Use for |
-|----------|---------|
-| `gitnexus://repo/GitNexus/context` | Codebase overview, check index freshness |
-| `gitnexus://repo/GitNexus/clusters` | All functional areas |
-| `gitnexus://repo/GitNexus/processes` | All execution flows |
-| `gitnexus://repo/GitNexus/process/{name}` | Step-by-step execution trace |
-
-## Self-Check Before Finishing
-
-Before completing any code modification task, verify:
-1. `gitnexus_impact` was run for all modified symbols
-2. No HIGH/CRITICAL risk warnings were ignored
-3. `gitnexus_detect_changes()` confirms changes match expected scope
-4. All d=1 (WILL BREAK) dependents were updated
-
-## Keeping the Index Fresh
-
-After committing code changes, the GitNexus index becomes stale. Re-run analyze to update it:
-
-```bash
-npx gitnexus analyze
-```
-
-If the index previously included embeddings, preserve them by adding `--embeddings`:
-
-```bash
-npx gitnexus analyze --embeddings
-```
-
-To check whether embeddings exist, inspect `.gitnexus/meta.json` — the `stats.embeddings` field shows the count (0 means no embeddings). **Running analyze without `--embeddings` will delete any previously generated embeddings.**
-
-> Claude Code users: A PostToolUse hook handles this automatically after `git commit` and `git merge`.
-
-## CLI
-
-| Task | Read this skill file |
-|------|---------------------|
-| Understand architecture / "How does X work?" | `.claude/skills/gitnexus/gitnexus-exploring/SKILL.md` |
-| Blast radius / "What breaks if I change X?" | `.claude/skills/gitnexus/gitnexus-impact-analysis/SKILL.md` |
-| Trace bugs / "Why is X failing?" | `.claude/skills/gitnexus/gitnexus-debugging/SKILL.md` |
-| Rename / extract / split / refactor | `.claude/skills/gitnexus/gitnexus-refactoring/SKILL.md` |
-| Tools, resources, schema reference | `.claude/skills/gitnexus/gitnexus-guide/SKILL.md` |
-| Index, status, clean, wiki CLI commands | `.claude/skills/gitnexus/gitnexus-cli/SKILL.md` |
-
-<!-- gitnexus:end -->
+See the `<!-- gitnexus:start --> … <!-- gitnexus:end -->` block in **[AGENTS.md](AGENTS.md)** for the canonical MCP tools, impact analysis rules, and index instructions.

CONTRIBUTING.md

@@ -77,7 +77,7 @@ Every workflow under `.github/workflows/` MUST declare a top-level `concurrency:
   - Per-PR scope (for `issue_comment`, `pull_request_review*`, `pull_request` meta events): `${{ github.workflow }}-${{ github.event.pull_request.number || github.event.issue.number }}`
   - `workflow_run` scope (e.g. `ci-report.yml`): `${{ github.workflow }}-${{ github.event.workflow_run.pull_requests[0].number || format('{0}/{1}', github.event.workflow_run.head_repository.full_name, github.event.workflow_run.head_branch) }}` — the fork fallback must be stable across reruns (never `workflow_run.id`, which is per-run-unique and defeats serialization).
   - Global single-slot (manual dispatch utilities): `${{ github.workflow }}`
-  - **Reusable workflows invoked via `workflow_call`:** do NOT use `${{ github.workflow }}` in the group key — in called-workflow context its evaluation is ambiguous and can resolve to the caller's name, which would deadlock against the caller's own group. Use a hardcoded literal prefix and a `github.event_name`-aware expression that falls through to `github.run_id` for reusable invocations (see `ci.yml` for the canonical form).
+  - **Reusable workflows invoked via `workflow_call`:** do NOT use `${{ github.workflow }}` in the group key — in called-workflow context its evaluation is ambiguous and can resolve to the caller's name, which would deadlock against the caller's own group. Use a hardcoded literal prefix and a `github.event_name`-aware expression that falls through to `github.run_id` for reusable invocations (see `ci.yml` for the canonical form). Approved literal prefixes: `CI-` (`ci.yml`) and `docker-build-push-` (`docker.yml`). The `check-workflow-concurrency.py` validation script must be updated whenever a new approved literal prefix is added.
   - **Merge queue (`merge_group`)**: when this event is added, use `${{ github.workflow }}-${{ github.event.merge_group.head_ref }}` with `cancel-in-progress: false` (every queue entry is a distinct ref; never cancel).
 - **`cancel-in-progress` policy:**
 
@@ -127,6 +127,11 @@ Two publish workflows ship `gitnexus` to npm:
     the cycle from `latest`.
   - `N` is auto-incremented against existing `X.Y.Z-rc.*` entries on the
     registry. First rc for a given base is `rc.1`.
+  - After the npm publish succeeds, the workflow calls `docker.yml` as a
+    reusable workflow to build and push the corresponding RC Docker images
+    (e.g. `ghcr.io/abhigyanpatwari/gitnexus:1.7.0-rc.1`). The images are
+    signed with Cosign; the OIDC identity is `docker.yml@refs/heads/main`
+    (the caller's ref — see README.md § Docker for the verify command).
 
   Idempotency: the workflow pushes an `rc/<HEAD_SHA>` marker tag and a
   `v<RC>` release tag **atomically, before** calling `npm publish`. The guard
@@ -140,6 +145,27 @@ Two publish workflows ship `gitnexus` to npm:
   # then redispatch the workflow with force: true
   ```
 
+  **Docker-only partial failure:** if `publish` succeeds (npm tarball + tags
+  are live) but the `docker` job subsequently fails (e.g. GHCR flakiness),
+  the npm RC is already published and the `rc/<HEAD_SHA>` marker is in place.
+  Re-running `release-candidate.yml` with `force: true` will abort at the
+  "Version already exists on npm" guard. To recover without cutting a new RC:
+
+  ```bash
+  # 1. Manually trigger only the docker workflow, passing the existing RC tag:
+  gh workflow run docker.yml --ref main -f tag=v<RC_VERSION>
+  # (requires a workflow_dispatch trigger on docker.yml — see note below)
+  ```
+
+  Because `docker.yml` intentionally has no `workflow_dispatch` (images are
+  tag-driven by design), the practical recovery options are:
+  - Wait for the next commit on `main`, which will cut a new RC that includes
+    the Docker build.
+  - Manually run `docker build` + `docker push` locally and sign with Cosign
+    against the same digest.
+  - Delete `rc/<HEAD_SHA>` and `v<RC>` tags, then redispatch with `force:
+    true` to re-run the full RC pipeline (cuts a new RC number).
+
 The rc workflow never moves `latest`. To verify after a change, inspect dist-tags:
 
 ```bash

Dockerfile.cli

@@ -0,0 +1,58 @@
+ARG BUILDPLATFORM
+ARG TARGETPLATFORM
+
+# ── Builder ────────────────────────────────────────────────────────────
+# Native modules (tree-sitter-*, onnxruntime-node, node-gyp builds for
+# tree-sitter-proto / tree-sitter-swift) require python3 + a C/C++ toolchain.
+FROM node:22-trixie-slim AS builder
+
+WORKDIR /app
+
+# Toolchain for node-gyp / native builds.
+RUN apt-get update && apt-get install -y --no-install-recommends python3 make g++ git && rm -rf /var/lib/apt/lists/*
+
+# Build gitnexus-shared first — gitnexus depends on it as a workspace.
+COPY gitnexus-shared/package.json gitnexus-shared/package-lock.json ./gitnexus-shared/
+RUN npm ci --prefix gitnexus-shared
+COPY gitnexus-shared ./gitnexus-shared
+RUN rm -f gitnexus-shared/tsconfig.tsbuildinfo
+RUN npm run build --prefix gitnexus-shared
+
+# Copy the full gitnexus package before installing — `npm ci` triggers
+# `postinstall` (patches tree-sitter-swift, builds the vendored
+# tree-sitter-proto) and `prepare` (compiles TypeScript via scripts/build.js),
+# both of which need the source tree.
+COPY gitnexus ./gitnexus
+RUN npm ci --prefix gitnexus
+
+# Drop dev dependencies for a smaller runtime layer.
+RUN npm prune --omit=dev --prefix gitnexus
+
+# ── Runtime ────────────────────────────────────────────────────────────
+FROM node:22-trixie-slim AS runtime
+
+# curl for the healthcheck; git so `gitnexus` can clone repos at runtime.
+RUN apt-get update && apt-get install -y --no-install-recommends curl git && rm -rf /var/lib/apt/lists/*
+
+WORKDIR /app
+
+# Pre-create the data directory and hand it to the unprivileged `node` user
+# so the bind-mounted volume is writable without root.
+RUN mkdir -p /data/gitnexus && chown -R node:node /data
+
+COPY --from=builder --chown=node:node /app/gitnexus/dist ./gitnexus/dist
+COPY --from=builder --chown=node:node /app/gitnexus/node_modules ./gitnexus/node_modules
+COPY --from=builder --chown=node:node /app/gitnexus/package.json ./gitnexus/package.json
+COPY --from=builder --chown=node:node /app/gitnexus/vendor ./gitnexus/vendor
+
+USER node
+
+# The web UI defaults to http://localhost:4747 — keep that contract.
+ENV GITNEXUS_HOME=/data/gitnexus \
+    NODE_ENV=production \
+    PORT=4747
+
+EXPOSE 4747
+
+# Bind to 0.0.0.0 so the server is reachable from the host's mapped port.
+CMD ["node", "gitnexus/dist/cli/index.js", "serve", "--host", "0.0.0.0", "--port", "4747"]

Dockerfile.web

@@ -0,0 +1,37 @@
+ARG BUILDPLATFORM
+ARG TARGETPLATFORM
+
+FROM --platform=$BUILDPLATFORM node:22-alpine AS builder
+
+WORKDIR /app
+
+COPY gitnexus-shared/package.json gitnexus-shared/package-lock.json ./gitnexus-shared/
+RUN npm ci --prefix gitnexus-shared
+
+COPY gitnexus-shared ./gitnexus-shared
+RUN npm run build --prefix gitnexus-shared
+
+COPY gitnexus/package.json ./gitnexus/
+
+COPY gitnexus-web/package.json gitnexus-web/package-lock.json ./gitnexus-web/
+RUN npm ci --prefix gitnexus-web
+
+COPY gitnexus-web ./gitnexus-web
+RUN npm run build --prefix gitnexus-web
+
+FROM node:22-alpine AS runtime
+
+RUN apk add --no-cache curl
+
+WORKDIR /app
+
+COPY --from=builder /app/gitnexus-web/dist ./dist
+COPY docker-server.mjs ./docker-server.mjs
+
+RUN chown -R node:node /app
+
+USER node
+
+EXPOSE 4173
+
+CMD ["node", "docker-server.mjs"]

MIGRATION.md

@@ -1,5 +1,49 @@
 # Migration Guide
 
+## `impact` tool may now return `{ status: 'ambiguous' }` (PR #888, issue #470)
+
+Before this change the `impact` MCP tool silently picked the first match
+when the `target` name hit multiple symbols (Class → Interface → Function
+→ Method → Constructor priority UNION). This often produced analysis for
+the wrong symbol with no signal back to the caller.
+
+After this change, when the resolver finds more than one viable match
+and the caller supplied none of `target_uid` / `file_path` / `kind`,
+`impact` returns a disambiguation response shaped like:
+
+```json
+{
+  "status": "ambiguous",
+  "message": "Found N symbols matching '<target>'. Use target_uid, file_path, or kind to disambiguate.",
+  "target": { "name": "<target>" },
+  "direction": "upstream",
+  "impactedCount": 0,
+  "risk": "UNKNOWN",
+  "candidates": [
+    { "uid": "...", "name": "...", "kind": "Function", "filePath": "...", "line": 42, "score": 0.76 }
+  ]
+}
+```
+
+### Do I need to migrate?
+
+**Probably not, but check for assumptions.** Callers that unconditionally
+read `result.byDepth` / `result.summary` / `result.affected_processes`
+without first checking `result.status` will now see `undefined` in the
+ambiguous case. The fix is to branch on `result.status === 'ambiguous'`
+first and follow up with `target_uid` (preferred) or `file_path` / `kind`.
+
+The `context` tool's ambiguous response is a strict superset of the
+existing shape — every candidate gains a `score` field, no existing field
+has changed. No migration required for `context` callers.
+
+### What happens on re-index?
+
+Nothing — this is an MCP-surface change only. The graph schema, indexer,
+and stored data are untouched.
+
+---
+
 ## OVERRIDES → METHOD_OVERRIDES (PR #642)
 
 The `OVERRIDES` relationship type has been renamed to `METHOD_OVERRIDES` for

README.md

@@ -9,7 +9,7 @@
 
   <h2>Join the official Discord to discuss ideas, issues etc!</h2>
 
-  <a href="https://discord.gg/AAsRVT6fGb">
+  <a href="https://discord.gg/MgJrmsqr62">
     <img src="https://img.shields.io/discord/1477255801545429032?color=5865F2&logo=discord&logoColor=white" alt="Discord"/>
   </a>
   <a href="https://www.npmjs.com/package/gitnexus">
@@ -194,6 +194,7 @@ gitnexus analyze --force         # Force full re-index
 gitnexus analyze --skills        # Generate repo-specific skill files from detected communities
 gitnexus analyze --skip-embeddings  # Skip embedding generation (faster)
 gitnexus analyze --skip-agents-md  # Preserve custom AGENTS.md/CLAUDE.md gitnexus section edits
+gitnexus analyze --skip-git        # Index folders that are not Git repositories
 gitnexus analyze --embeddings    # Enable embedding generation (slower, better search)
 gitnexus analyze --verbose       # Log skipped files when parsers are unavailable
 gitnexus mcp                     # Start MCP server (stdio) — serves all indexed repos
@@ -207,11 +208,11 @@ gitnexus wiki --model <model>    # Wiki with custom LLM model (default: gpt-4o-m
 gitnexus wiki --base-url <url>   # Wiki with custom LLM API base URL
 
 # Repository groups (multi-repo / monorepo service tracking)
-gitnexus group create <name>     # Create a repository group
-gitnexus group add <name> <repo> # Add a repo to a group
-gitnexus group remove <name> <repo> # Remove a repo from a group
-gitnexus group list [name]       # List groups, or show one group's config
-gitnexus group sync <name>       # Extract contracts and match across repos/services
+gitnexus group create <name>                                   # Create a repository group
+gitnexus group add <group> <groupPath> <registryName>          # Add a repo to a group. <groupPath> is a hierarchy path (e.g. hr/hiring/backend); <registryName> is the repo's name from the registry (see `gitnexus list`)
+gitnexus group remove <group> <groupPath>                      # Remove a repo from a group by its hierarchy path
+gitnexus group list [name]                                     # List groups, or show one group's config
+gitnexus group sync <name>                                     # Extract contracts and match across repos/services
 gitnexus group contracts <name>  # Inspect extracted contracts and cross-links
 gitnexus group query <name> <q>  # Search execution flows across all repos in a group
 gitnexus group status <name>     # Check staleness of repos in a group
@@ -335,6 +336,155 @@ cd ../gitnexus-web && npm install
 npm run dev
 ```
 
+## Docker
+
+The official Docker setup ships **two signed images** orchestrated by `docker-compose.yaml`:
+
+| Image                                              | Purpose                                                                |
+| -------------------------------------------------- | ---------------------------------------------------------------------- |
+| `ghcr.io/abhigyanpatwari/gitnexus:latest`          | CLI / `gitnexus serve` backend (HTTP API on port `4747`, MCP, indexer) |
+| `ghcr.io/abhigyanpatwari/gitnexus-web:latest`      | Static web UI (port `4173`)                                            |
+
+> **Heads-up — image rename.** Earlier releases published the web UI under
+> `ghcr.io/abhigyanpatwari/gitnexus`. Starting with the introduction of the
+> bundled backend, that slug now hosts the CLI/server image and the UI moved
+> to `ghcr.io/abhigyanpatwari/gitnexus-web`. The previous tags remain
+> available for pulling, but new versions are only published under the new
+> slugs. Update your `docker run` / compose files accordingly (or just adopt
+> the bundled compose).
+
+### One-command setup
+
+```bash
+docker compose up -d
+```
+
+This starts the server on `http://localhost:4747` and the web UI on
+`http://localhost:4173`. The UI auto-detects the server because the browser
+runs on the host and reaches the container via the mapped port.
+
+A named volume (`gitnexus-data`) persists the global registry, indexes, and
+cloned repos at `/data/gitnexus` inside the server container. To make repos on
+your host machine indexable, set `WORKSPACE_DIR` before bringing the stack up:
+
+```bash
+WORKSPACE_DIR=$HOME/code docker compose up -d
+# Inside the server container the directory is mounted read-only at /workspace.
+docker compose exec gitnexus-server gitnexus index /workspace/my-repo
+```
+
+### Direct `docker run`
+
+```bash
+# Server
+docker run --rm -d \
+  --name gitnexus-server \
+  -p 4747:4747 \
+  -v gitnexus-data:/data/gitnexus \
+  ghcr.io/abhigyanpatwari/gitnexus:latest
+
+# Web UI
+docker run --rm -d \
+  --name gitnexus-web \
+  -p 4173:4173 \
+  ghcr.io/abhigyanpatwari/gitnexus-web:latest
+```
+
+Optional env file (override image tags, container names, ports, workspace dir):
+
+```bash
+cp .env.example .env
+docker compose --env-file .env up -d
+```
+
+### Versioning & supply-chain protection
+
+The Docker images are version-locked to the npm package:
+
+- Stable images are **only published from `vX.Y.Z` git tags** (via `docker.yml`
+  triggered directly by the tag push), and the workflow refuses to build unless
+  the tag exactly matches `gitnexus/package.json`'s version. So
+  `ghcr.io/abhigyanpatwari/gitnexus:1.6.2` is byte-for-byte the same release
+  as `npm install gitnexus@1.6.2` — no drift, no floating builds from `main`.
+- Release-candidate images (e.g. `:1.7.0-rc.1`) are published alongside each
+  RC npm release. They are built by `release-candidate.yml` calling `docker.yml`
+  as a reusable workflow after the RC tag is created and pushed.
+- `:latest` is auto-promoted only from non-prerelease tags by the Docker
+  metadata action, so it always points at a real, npm-published version.
+
+Both images are signed with [Cosign keyless signing][cosign-keyless] using the
+workflow's GitHub OIDC identity, and shipped with build provenance and SBOM
+attestations. **This is your protection against supply-chain attacks**: even if
+an attacker republishes a same-named image elsewhere (or somehow pushes to a
+typo-squatted registry), they cannot forge a Cosign signature tied to
+`abhigyanpatwari/GitNexus`'s `docker.yml`. Always verify before pulling into
+sensitive environments:
+
+**Stable releases** — signed from the `v*` tag ref:
+
+```bash
+cosign verify ghcr.io/abhigyanpatwari/gitnexus:1.6.2 \
+  --certificate-identity-regexp '^https://github\.com/abhigyanpatwari/GitNexus/\.github/workflows/docker\.yml@refs/tags/v[0-9]+\.[0-9]+\.[0-9]+(-[a-zA-Z0-9.]+)?$' \
+  --certificate-oidc-issuer https://token.actions.githubusercontent.com
+```
+
+The regex pins the certificate identity to this repo's `docker.yml` workflow
+**run from a `v*` tag** — rejecting unsigned images, images signed by other
+workflows, and images signed from unprotected refs.
+
+**Release candidates** — signed from `refs/heads/main` (the caller's ref when
+`release-candidate.yml` invokes `docker.yml` as a reusable workflow):
+
+```bash
+cosign verify ghcr.io/abhigyanpatwari/gitnexus:1.7.0-rc.1 \
+  --certificate-identity 'https://github.com/abhigyanpatwari/GitNexus/.github/workflows/docker.yml@refs/heads/main' \
+  --certificate-oidc-issuer https://token.actions.githubusercontent.com
+```
+
+You can also inspect the build provenance and SBOM:
+
+```bash
+cosign download attestation ghcr.io/abhigyanpatwari/gitnexus:1.6.2 \
+  --predicate-type https://slsa.dev/provenance/v1
+```
+
+#### Kubernetes: enforce signatures at admission
+
+For Kubernetes deployments, ship the bundled
+[`ClusterImagePolicy`](deploy/kubernetes/cluster-image-policy.yaml) so the
+[Sigstore policy-controller][policy-controller] rejects any GitNexus pod whose
+image is not signed by this repo's `docker.yml` running from a `vX.Y.Z` tag —
+the same identity the `cosign verify` snippet above pins.
+
+```bash
+# 1. Install the controller (one-time, cluster-wide)
+helm repo add sigstore https://sigstore.github.io/helm-charts && helm repo update
+helm install policy-controller -n cosign-system --create-namespace \
+  sigstore/policy-controller
+
+# 2. Opt your namespace in
+kubectl label namespace <your-ns> policy.sigstore.dev/include=true
+
+# 3. Apply the policy
+kubectl apply -f deploy/kubernetes/cluster-image-policy.yaml
+```
+
+After this, attempting to deploy an unsigned image — or one signed by anything
+other than `abhigyanpatwari/GitNexus`'s `docker.yml` at a `v*` tag — fails the
+admission webhook before a pod is ever created. This turns the verifiable
+signature into an enforced policy, which is the supply-chain control most
+clusters actually need.
+
+[cosign-keyless]: https://docs.sigstore.dev/cosign/signing/overview/
+[policy-controller]: https://docs.sigstore.dev/policy-controller/overview/
+
+### Files
+
+- [Dockerfile.web](Dockerfile.web) — builds `gitnexus-shared` and `gitnexus-web`, then serves the production frontend.
+- [Dockerfile.cli](Dockerfile.cli) — builds the CLI/server (with its native deps) and runs `gitnexus serve --host 0.0.0.0`.
+- [docker-compose.yaml](docker-compose.yaml) — starts both signed images side by side.
+- [.env.example](.env.example) — overrides for image names, container names, ports, and the workspace mount.
+
 The web UI uses the same indexing pipeline as the CLI but runs entirely in WebAssembly (Tree-sitter WASM, LadybugDB WASM, in-browser embeddings). It's great for quick exploration but limited by browser memory for larger repos.
 
 **Local Backend Mode:** Run `gitnexus serve` and open the web UI locally — it auto-detects the server and shows all your indexed repos, with full AI chat support. No need to re-upload or re-index. The agent's tools (Cypher queries, search, code navigation) route through the backend HTTP API automatically.

deploy/kubernetes/cluster-image-policy.yaml

@@ -0,0 +1,64 @@
+# Sigstore policy-controller ClusterImagePolicy for GitNexus container images.
+#
+# This enforces — at admission time — that every Pod pulling a
+# `ghcr.io/abhigyanpatwari/gitnexus` or `gitnexus-web` image is using a build
+# that was Cosign-keyless-signed by this repository's `docker.yml` workflow
+# running from a `vX.Y.Z` git tag. Unsigned images, images signed by other
+# workflows, and images signed from unprotected refs (e.g. `main`, PR branches)
+# are rejected.
+#
+# Prerequisites
+# -------------
+# 1. Install the Sigstore policy-controller in your cluster (Helm):
+#
+#      helm repo add sigstore https://sigstore.github.io/helm-charts
+#      helm repo update
+#      helm install policy-controller -n cosign-system --create-namespace \
+#        sigstore/policy-controller
+#
+# 2. Opt namespaces in to verification:
+#
+#      kubectl label namespace <your-ns> policy.sigstore.dev/include=true
+#
+# 3. Apply this policy:
+#
+#      kubectl apply -f deploy/kubernetes/cluster-image-policy.yaml
+#
+# After this, `kubectl run --image=ghcr.io/abhigyanpatwari/gitnexus:<tag>` in
+# any opted-in namespace will only succeed if the image carries a valid
+# Sigstore signature with the pinned identity.
+#
+# References
+# - https://docs.sigstore.dev/policy-controller/overview/
+# - https://github.com/sigstore/policy-controller
+apiVersion: policy.sigstore.dev/v1beta1
+kind: ClusterImagePolicy
+metadata:
+  name: gitnexus-signed-images
+spec:
+  # Apply to both published GitNexus images on GHCR. Image references always
+  # carry a tag or digest at admission time, so these two globs cover every
+  # `gitnexus:<tag>`, `gitnexus@sha256:...`, `gitnexus-web:<tag>`, and
+  # `gitnexus-web@sha256:...` reference.
+  images:
+    - glob: 'ghcr.io/abhigyanpatwari/gitnexus*'
+  authorities:
+    - name: gitnexus-cosign-keyless
+      keyless:
+        # Public-good Sigstore Fulcio root.
+        url: https://fulcio.sigstore.dev
+        identities:
+          # Pin both the OIDC issuer (GitHub Actions) AND the exact workflow
+          # path running from a `vX.Y.Z` (or `vX.Y.Z-prerelease`) tag. Same
+          # regex the README's `cosign verify` example uses; it rejects:
+          #   * unsigned images
+          #   * signatures from any other repo / workflow
+          #   * signatures from non-tag refs (main, PRs, release branches)
+          #   * signatures from arbitrary non-semver tags
+          - issuer: https://token.actions.githubusercontent.com
+            subjectRegExp: ^https://github\.com/abhigyanpatwari/GitNexus/\.github/workflows/docker\.yml@refs/tags/v[0-9]+\.[0-9]+\.[0-9]+(-[a-zA-Z0-9.]+)?$
+      # Cross-check the signature against the public Rekor transparency log,
+      # so an attacker who briefly compromised Fulcio cannot retroactively
+      # mint a signature without leaving a public, append-only audit record.
+      ctlog:
+        url: https://rekor.sigstore.dev

docker-compose.yaml

@@ -0,0 +1,45 @@
+services:
+  gitnexus-server:
+    image: ${SERVER_IMAGE:-ghcr.io/abhigyanpatwari/gitnexus:latest}
+    container_name: ${SERVER_CONTAINER_NAME:-gitnexus-server}
+    # Map the server to the same host port the web UI expects by default
+    # (http://localhost:4747). The browser runs on the host, so the UI's
+    # built-in default works without any reconfiguration.
+    ports:
+      - '${SERVER_HOST_PORT:-4747}:4747'
+    volumes:
+      # Persist the global registry, indexes, and cloned repos across runs.
+      - gitnexus-data:/data/gitnexus
+      # Optional: mount a host workspace so `gitnexus index <path>` can see
+      # repos you already have on disk. The default points at an empty
+      # `./workspace/` sibling that compose will create on first start —
+      # it intentionally does NOT bind-mount the repo root, which would
+      # expose `.git`, `.env`, and CI secrets to the container.
+      # Override with `WORKSPACE_DIR=/abs/path/to/your/repos`.
+      - ${WORKSPACE_DIR:-./workspace}:/workspace:ro
+    restart: unless-stopped
+    healthcheck:
+      test: ['CMD', 'curl', '-fsS', 'http://localhost:4747/api/heartbeat']
+      interval: 30s
+      timeout: 5s
+      retries: 3
+      start_period: 15s
+
+  gitnexus-web:
+    image: ${WEB_IMAGE:-ghcr.io/abhigyanpatwari/gitnexus-web:latest}
+    container_name: ${WEB_CONTAINER_NAME:-gitnexus-web}
+    ports:
+      - '${WEB_HOST_PORT:-4173}:4173'
+    depends_on:
+      gitnexus-server:
+        condition: service_healthy
+    restart: unless-stopped
+    healthcheck:
+      test: ['CMD', 'curl', '-f', 'http://localhost:4173/']
+      interval: 30s
+      timeout: 5s
+      retries: 3
+      start_period: 10s
+
+volumes:
+  gitnexus-data:

docker-server.mjs

@@ -0,0 +1,81 @@
+import { createReadStream } from 'node:fs';
+import { stat } from 'node:fs/promises';
+import { createServer } from 'node:http';
+import { extname, join, normalize, sep } from 'node:path';
+
+const host = '0.0.0.0';
+const port = Number(process.env.PORT || '4173');
+const root = join(process.cwd(), 'dist');
+
+const contentTypes = {
+  '.css': 'text/css; charset=utf-8',
+  '.html': 'text/html; charset=utf-8',
+  '.js': 'text/javascript; charset=utf-8',
+  '.json': 'application/json; charset=utf-8',
+  '.map': 'application/json; charset=utf-8',
+  '.png': 'image/png',
+  '.svg': 'image/svg+xml',
+  '.txt': 'text/plain; charset=utf-8',
+  '.woff': 'font/woff',
+  '.woff2': 'font/woff2',
+};
+
+function resolvePath(urlPath) {
+  let decoded;
+  try {
+    decoded = decodeURIComponent(urlPath);
+  } catch {
+    return null;
+  }
+  if (decoded.includes('\0')) return null;
+  const cleanPath = normalize(decoded.replace(/^\/+/, ''));
+  const candidate = join(root, cleanPath);
+  if (candidate !== root && !candidate.startsWith(root + sep)) return null;
+  return candidate;
+}
+
+const server = createServer(async (req, res) => {
+  const requestPath = req.url?.split('?')[0] || '/';
+  let filePath = resolvePath(requestPath);
+
+  if (!filePath) {
+    res.writeHead(400);
+    res.end('Bad request');
+    return;
+  }
+
+  try {
+    const fileStat = await stat(filePath).catch(() => null);
+    if (fileStat?.isDirectory()) {
+      filePath = join(filePath, 'index.html');
+    } else if (!fileStat?.isFile()) {
+      filePath = join(root, 'index.html');
+    }
+
+    const finalStat = await stat(filePath).catch(() => null);
+    if (!finalStat?.isFile()) {
+      res.writeHead(404);
+      res.end('Not found');
+      return;
+    }
+
+    res.writeHead(200, {
+      'Cache-Control': filePath.includes('/assets/')
+        ? 'public, max-age=31536000, immutable'
+        : 'no-cache',
+      'Content-Type': contentTypes[extname(filePath)] || 'application/octet-stream',
+      'Cross-Origin-Opener-Policy': 'same-origin',
+      'Cross-Origin-Embedder-Policy': 'require-corp',
+    });
+    const stream = createReadStream(filePath);
+    stream.on('error', () => res.destroy());
+    stream.pipe(res);
+  } catch (error) {
+    res.writeHead(500);
+    res.end(error instanceof Error ? error.message : 'Internal server error');
+  }
+});
+
+server.listen(port, host, () => {
+  console.log(`gitnexus-web listening on http://${host}:${port}`);
+});

docker-server.test.mjs

@@ -0,0 +1,107 @@
+import { mkdir, mkdtemp, rm, unlink, writeFile } from 'node:fs/promises';
+import http, { createServer } from 'node:http';
+import { tmpdir } from 'node:os';
+import { dirname, join } from 'node:path';
+import { spawn } from 'node:child_process';
+import { fileURLToPath } from 'node:url';
+import { after, before, it } from 'node:test';
+import assert from 'node:assert/strict';
+
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const serverScript = join(__dirname, 'docker-server.mjs');
+
+function getFreePort() {
+  return new Promise((resolve) => {
+    const s = createServer();
+    s.listen(0, '127.0.0.1', () => {
+      const { port } = s.address();
+      s.close(() => resolve(port));
+    });
+  });
+}
+
+function rawGet(port, path) {
+  return new Promise((resolve, reject) => {
+    const req = http.request({ host: '127.0.0.1', port, path }, (res) => {
+      let body = '';
+      res.setEncoding('utf8');
+      res.on('data', (chunk) => {
+        body += chunk;
+      });
+      res.on('end', () => resolve({ status: res.statusCode, headers: res.headers, body }));
+    });
+    req.on('error', reject);
+    req.end();
+  });
+}
+
+async function waitForServer(port, retries = 30) {
+  for (let i = 0; i < retries; i++) {
+    try {
+      await rawGet(port, '/');
+      return;
+    } catch {
+      await new Promise((r) => setTimeout(r, 100));
+    }
+  }
+  throw new Error('Server did not start in time');
+}
+
+let tmpDir, serverPort, child;
+
+before(async () => {
+  tmpDir = await mkdtemp(join(tmpdir(), 'gitnexus-docker-test-'));
+  const distDir = join(tmpDir, 'dist');
+  const assetsDir = join(distDir, 'assets');
+  await mkdir(assetsDir, { recursive: true });
+  await writeFile(join(distDir, 'index.html'), '<html><body>spa</body></html>');
+  await writeFile(join(assetsDir, 'app.abc123.js'), 'console.log("app")');
+
+  serverPort = await getFreePort();
+  child = spawn(process.execPath, [serverScript], {
+    cwd: tmpDir,
+    env: { ...process.env, PORT: String(serverPort) },
+    stdio: 'pipe',
+  });
+  child.on('error', (err) => {
+    throw err;
+  });
+
+  await waitForServer(serverPort);
+});
+
+after(async () => {
+  child?.kill();
+  if (tmpDir) await rm(tmpDir, { recursive: true, force: true });
+});
+
+it('serves a valid asset with immutable cache header', async () => {
+  const res = await rawGet(serverPort, '/assets/app.abc123.js');
+  assert.equal(res.status, 200);
+  assert.match(res.headers['cache-control'], /immutable/);
+  assert.equal(res.headers['cross-origin-opener-policy'], 'same-origin');
+  assert.equal(res.headers['cross-origin-embedder-policy'], 'require-corp');
+});
+
+it('serves SPA fallback for unknown routes', async () => {
+  const res = await rawGet(serverPort, '/some/unknown/route');
+  assert.equal(res.status, 200);
+  assert.match(res.body, /spa/);
+  assert.match(res.headers['cache-control'], /no-cache/);
+});
+
+it('rejects path traversal with 400', async () => {
+  const res = await rawGet(serverPort, '/../../../etc/passwd');
+  assert.equal(res.status, 400);
+});
+
+it('rejects percent-encoded null bytes with 400', async () => {
+  const res = await rawGet(serverPort, '/foo%00bar');
+  assert.equal(res.status, 400);
+});
+
+it('returns 404 when dist/index.html is missing', async () => {
+  await unlink(join(tmpDir, 'dist', 'index.html'));
+  const res = await rawGet(serverPort, '/nonexistent-page');
+  assert.equal(res.status, 404);
+});

docs/guides/microservices-grpc.md

@@ -0,0 +1,295 @@
+# Using GitNexus across gRPC microservices
+
+## When to use this guide
+
+This guide is for teams whose product lives in **several separate Git repositories** — one per service — and whose services talk to each other over **gRPC** (possibly alongside HTTP and message topics). GitNexus indexes each repo independently, then a _group_ stitches the per-repo indexes into a single cross-repo view that the `impact`, `query`, and `context` tools can traverse. If your services live in one monorepo, much of this still applies — set each service as a member of a group and use the `service` prefix to scope queries — but the walkthrough assumes the harder multi-repo case.
+
+## Mental model
+
+- Each repository has its own `.gitnexus/` index (a LadybugDB graph of symbols, relationships, processes). `gitnexus analyze` in each repo produces that index completely independently.
+- A **group** is a higher-level construct stored at `~/.gitnexus/groups/<group>/` that references the per-repo indexes by their registry name.
+- Sync-time extractors walk each member repo and emit **contracts** — provider or consumer records keyed by a canonical `contractId` (`grpc::auth.AuthService/Login`, `http::GET::/orders`, etc.).
+- The sync step matches providers and consumers that share a `contractId` and writes **cross-links** to `<groupDir>/contracts.json`. Those cross-links are what lets `impact({repo: "@<group>", target: "X"})` hop from one repo into another.
+- Contracts come from three places: automatic contract extractors (`grpc-extractor`, `http-route-extractor`, `topic-extractor`), a manifest escape hatch (`config.links` in `group.yaml`), and — for same-name symbol matches where no contract is declared — the exact-match matching cascade in [`matching.ts`](../../gitnexus/src/core/group/matching.ts).
+- Each repo stays editable and re-indexable on its own. Re-run `gitnexus analyze` in a repo when it changes, then `gitnexus group sync <group>` to refresh `contracts.json`. `gitnexus group status` reports which members are stale.
+
+## Prerequisites
+
+- GitNexus installed and runnable as `gitnexus` or `npx gitnexus` (see the root [README.md](../../README.md)).
+- Each service repository checked out locally. No requirement that they share a parent directory — the group references them by registry name.
+- Write access to `~/.gitnexus/` (the default gitnexus home; see `getDefaultGitnexusDir` in [`storage.ts`](../../gitnexus/src/core/group/storage.ts)).
+
+## Step-by-step walkthrough
+
+The example uses three services — a TypeScript API gateway, a Go orders service, and a Python inventory service — with gRPC between them. The gateway is an `orders` consumer; the orders service is both an `orders` provider and an `inventory` consumer; the inventory service is an `inventory` provider.
+
+### 1. Index each repository
+
+Run `analyze` from inside each service repo (or pass the path). The CLI surface lives in [`gitnexus/src/cli/analyze.ts`](../../gitnexus/src/cli/analyze.ts) and is wired in [`gitnexus/src/cli/index.ts`](../../gitnexus/src/cli/index.ts).
+
+```bash
+cd ~/code/gateway && npx gitnexus analyze
+cd ~/code/orders  && npx gitnexus analyze
+cd ~/code/inventory && npx gitnexus analyze
+```
+
+Useful flags:
+
+- `--force` — reindex even if up to date.
+- `--embeddings` — generate embedding vectors (needed only if you want semantic search; the exact-match cross-repo cascade does **not** need them).
+- `--name <alias>` — register the repo under a specific alias when two repos share a basename (e.g. two `api/` folders).
+- `--skip-git` — index a checkout that isn't a git repo.
+
+Each run writes a `.gitnexus/` folder in the repo and registers the repo in `~/.gitnexus/registry.json`. Confirm with `npx gitnexus list`.
+
+### 2. Author `group.yaml`
+
+Create the group directory and edit the config. Either use the CLI scaffolder or write the file directly — both produce the same shape consumed by [`config-parser.ts`](../../gitnexus/src/core/group/config-parser.ts).
+
+```bash
+npx gitnexus group create payments-platform
+# or manually:
+mkdir -p ~/.gitnexus/groups/payments-platform
+$EDITOR   ~/.gitnexus/groups/payments-platform/group.yaml
+```
+
+Minimal working `group.yaml`:
+
+```yaml
+version: 1
+name: payments-platform
+description: Gateway + orders + inventory (gRPC)
+
+repos:
+  gateway: gateway
+  orders: orders
+  inventory: inventory
+
+# Only add explicit links when the automatic extractors miss something —
+# see "When automatic extraction isn't enough" below.
+links: []
+
+packages: {}
+
+detect:
+  http: true
+  grpc: true
+  topics: true
+  shared_libs: true
+  embedding_fallback: false
+
+matching:
+  bm25_threshold: 0.7
+  embedding_threshold: 0.65
+  max_candidates_per_step: 3
+```
+
+Field notes (schema in [`types.ts`](../../gitnexus/src/core/group/types.ts)):
+
+- `version` — must be `1`. The parser rejects anything else.
+- `name` — required; used for the group directory name and all CLI / MCP calls.
+- `repos` — a mapping from **group path** (a logical name you choose; can be a hierarchy like `backend/orders`) to **registry name** (the name shown by `npx gitnexus list`). Both sides appear throughout the tooling: contract rows use the group path; `@<group>/<groupPath>` routes tools to a single member.
+- `links` — optional manifest escape hatch, one entry per explicit cross-repo contract. Validated by the parser: `from` and `to` must be known repo paths, `type` must be one of `http | grpc | topic | lib | custom`, and `role` must be `provider | consumer`.
+- `detect` — toggles per extractor family. Defaults (set in `config-parser.ts`) turn `http`, `grpc`, `topics`, and `shared_libs` on; disable the ones you don't use to speed up sync.
+- `matching` — thresholds for the matching cascade. The exact match is always run; other strategies depend on indexer state.
+
+### 3. Sync the group
+
+```bash
+npx gitnexus group sync payments-platform --verbose
+```
+
+What this does (see [`sync.ts`](../../gitnexus/src/core/group/sync.ts)):
+
+1. Opens each member's per-repo LadybugDB.
+2. Runs the HTTP, gRPC, and topic extractors against the source files.
+3. Applies manifest `links` through [`manifest-extractor.ts`](../../gitnexus/src/core/group/extractors/manifest-extractor.ts).
+4. Runs the exact-match cascade, joining providers and consumers that share a normalized `contractId`.
+5. Writes `contracts.json` in the group directory.
+
+Flags:
+
+- `--exact-only` — stop after the exact cascade; skip BM25 and embedding fallback.
+- `--skip-embeddings` — run exact plus BM25 but not embedding-based matching.
+- `--allow-stale` — don't warn if a member's index is stale.
+- `--json` — machine-readable output.
+
+The same operation is available over MCP as `group_sync({ name: "payments-platform" })` — see [`tools.ts`](../../gitnexus/src/mcp/tools.ts).
+
+### 4. Inspect the registry
+
+Use `gitnexus group contracts` for the CLI view or read the `gitnexus://group/<name>/contracts` MCP resource for the same data.
+
+```bash
+npx gitnexus group contracts payments-platform --type grpc --json
+```
+
+A shortened response:
+
+```json
+{
+  "contracts": [
+    {
+      "contractId": "grpc::orders.OrderService/PlaceOrder",
+      "type": "grpc",
+      "role": "provider",
+      "repo": "orders",
+      "symbolRef": { "filePath": "internal/grpc/order_server.go", "name": "RegisterOrderServiceServer" },
+      "confidence": 0.8,
+      "meta": { "service": "OrderService", "method": "PlaceOrder", "source": "go_register" }
+    },
+    {
+      "contractId": "grpc::orders.OrderService/PlaceOrder",
+      "type": "grpc",
+      "role": "consumer",
+      "repo": "gateway",
+      "symbolRef": { "filePath": "src/clients/orders.ts", "name": "OrderServiceClient" },
+      "confidence": 0.75,
+      "meta": { "service": "OrderService", "source": "ts_generated_client" }
+    }
+  ],
+  "crossLinks": [
+    {
+      "from": { "repo": "gateway", "symbolUid": "…", "symbolRef": { "filePath": "src/clients/orders.ts", "name": "OrderServiceClient" } },
+      "to":   { "repo": "orders",  "symbolUid": "…", "symbolRef": { "filePath": "internal/grpc/order_server.go", "name": "RegisterOrderServiceServer" } },
+      "type": "grpc",
+      "contractId": "grpc::orders.OrderService/PlaceOrder",
+      "matchType": "exact",
+      "confidence": 1.0
+    }
+  ]
+}
+```
+
+Staleness of the underlying indexes shows up in `npx gitnexus group status payments-platform` or the `gitnexus://group/<name>/status` resource.
+
+### 5. Run cross-repo impact with `@<group>` routing
+
+From any shell (you do **not** have to `cd` into a member repo), the normal `impact` / `query` / `context` tools accept `repo: "@<group>"` to fan out across all members, or `repo: "@<group>/<memberPath>"` to target one member. Routing is implemented in [`resolve-at-member.ts`](../../gitnexus/src/core/group/resolve-at-member.ts) and described in [`tools.ts`](../../gitnexus/src/mcp/tools.ts).
+
+Example MCP calls:
+
+```json
+{"tool": "impact", "arguments": {
+  "repo": "@payments-platform/orders",
+  "target": "PlaceOrder",
+  "direction": "upstream",
+  "crossDepth": 2
+}}
+```
+
+```json
+{"tool": "query", "arguments": {
+  "repo": "@payments-platform",
+  "query": "retry logic around PlaceOrder"
+}}
+```
+
+The CLI equivalents still exist for scripting:
+
+```bash
+npx gitnexus group impact payments-platform \
+  --repo orders --target PlaceOrder --direction upstream --cross-depth 2
+```
+
+Phase 1 walks within the anchor member; Phase 2 hops across the Contract Bridge wherever a cross-link endpoint matches an impacted symbol. See [`cross-impact.ts`](../../gitnexus/src/core/group/cross-impact.ts) for the bridge query.
+
+## How gRPC extraction works
+
+`GrpcExtractor` ([`grpc-extractor.ts`](../../gitnexus/src/core/group/extractors/grpc-extractor.ts)) runs two passes per member repo:
+
+1. **Proto map.** Every `**/*.proto` file is parsed to enumerate `service Foo { rpc Bar(...) }` blocks and (transitively) resolve the package name. Each RPC method becomes a provider contract with `contractId = grpc::<package>.<Service>/<Method>` and `confidence = 0.85`. Parsing uses the vendored `tree-sitter-proto` grammar when available and falls back to a length-preserving manual parser (`extractServiceBlocks`) otherwise, so `.proto` extraction works on platforms where the grammar fails to build.
+2. **Source scan.** Every source file whose extension matches [`GRPC_SCAN_GLOB`](../../gitnexus/src/core/group/extractors/grpc-patterns/index.ts) is parsed by its language plugin:
+
+| Language | Provider signal | Consumer signal |
+|----------|-----------------|-----------------|
+| Go ([`go.ts`](../../gitnexus/src/core/group/extractors/grpc-patterns/go.ts)) | `pb.RegisterXxxServer(...)`, `pb.UnimplementedXxxServer` embedded in struct | `pb.NewXxxClient(conn)` |
+| Java ([`java.ts`](../../gitnexus/src/core/group/extractors/grpc-patterns/java.ts)) | `extends XxxServiceGrpc.XxxServiceImplBase` (with or without `@GrpcService`) | `XxxServiceGrpc.newBlockingStub(...)`, `newStub(...)` |
+| Python ([`python.ts`](../../gitnexus/src/core/group/extractors/grpc-patterns/python.ts)) | `add_XxxServicer_to_server(...)` (bare or `_pb2_grpc.` attribute form) | `XxxStub(channel)` (ignores `Mock`/`Test`/`Fake`/`Stub`) |
+| Node / TS ([`node.ts`](../../gitnexus/src/core/group/extractors/grpc-patterns/node.ts)) | NestJS `@GrpcMethod('Service','Method')` | `@GrpcClient` field typed `XxxServiceClient`, `client.getService<X>('Service')`, `new XxxServiceClient(...)`, `new foo.bar.XxxService(...)` in files that call `loadPackageDefinition` |
+
+For each source-scan detection the extractor looks up the short service name in the proto map and picks:
+
+- `grpc::<package>.<Service>/<Method>` when a method is named and the service resolves against the proto map,
+- `grpc::<package>.<Service>/*` (wildcard) when only the service is known, or
+- `grpc::<ServiceName>/*` when no `.proto` is available at all.
+
+Provider detections land at confidence 0.8 (with proto) or 0.65 (without); consumers at 0.75 or 0.55. NestJS `@GrpcMethod` is fixed at 0.8 because the decorator is self-describing.
+
+### Matching
+
+`matching.ts` lowercases the package/service segment before comparing contract ids, so bindings that capitalize names differently (`auth.AuthService` vs `auth.authservice`) still match. Method names are compared case-sensitively because gRPC's wire path is case-sensitive. Service-only wildcards (`grpc::pkg.Svc/*`) match any method on the same service during cross-linking.
+
+### Known limitations
+
+- **Ambiguous proto resolution.** If a short service name exists in more than one `.proto` file and the source-scan hit can't be narrowed down by shared directory segments (`resolveProtoConflict` refuses to guess), the extractor skips contract emission and logs a warning.
+- **Proto packages must be resolvable locally.** Transitive imports that point outside the repo produce an empty package segment, which means the contract id collapses to `grpc::<Service>/<Method>`. Cross-repo matches still work as long as both sides agree on the empty package.
+- **Rewrite rules are not implemented.** If the provider repo writes `grpc::orders.OrderService/PlaceOrder` and the consumer repo writes `grpc::orderspb.OrderService/PlaceOrder`, they won't cross-link automatically. Use `config.links` to declare the correspondence (see below).
+- **One sync = one snapshot.** Contracts are extracted against the indexed snapshot of each repo. Re-index first, then re-sync; the `status` command and resource surface staleness.
+
+## When automatic extraction isn't enough
+
+The escape hatch is the `links` list in `group.yaml`, handled by [`ManifestExtractor`](../../gitnexus/src/core/group/extractors/manifest-extractor.ts). Each entry is a **one-directional** provider/consumer declaration:
+
+```yaml
+version: 1
+name: payments-platform
+repos:
+  gateway: gateway
+  orders: orders
+  inventory: inventory
+
+links:
+  # Explicit gRPC method: use when naming mismatches stop the
+  # automatic matcher from cross-linking.
+  - from: gateway
+    to: orders
+    type: grpc
+    contract: OrderService/PlaceOrder
+    role: consumer
+
+  # Service-level link when you don't want to enumerate methods.
+  - from: orders
+    to: inventory
+    type: grpc
+    contract: InventoryService
+    role: consumer
+
+  # Works for HTTP too — use `METHOD::/path` form for the exact
+  # handler, or just `/path` for a method-agnostic wildcard.
+  - from: gateway
+    to: orders
+    type: http
+    contract: POST::/orders
+    role: consumer
+```
+
+What the manifest extractor does (see [`manifest-extractor.ts`](../../gitnexus/src/core/group/extractors/manifest-extractor.ts)):
+
+1. Builds a canonical `contractId` with `buildContractId` — the same canonicalization used by the automatic extractors, so manifest links cross-match automatic contracts on the other side.
+2. Tries to resolve each side to a real graph symbol (the `Route` node for HTTP, a `Function|Method` / `Class|Interface` for gRPC, a `Package|Module` for `lib`).
+3. If resolution fails, falls back to a deterministic synthetic uid (`manifest::<repo>::<contractId>`) so both sides still line up in cross-impact — name-only links still work when the symbol isn't in the graph.
+4. Emits both a provider and a consumer `StoredContract` (confidence `1.0`, `source: "manifest"`) and a `CrossLink` with `matchType: "manifest"`.
+
+Use `links` for exactly the cases the extractor can't infer: different package names across repos (see #701), hand-rolled transports, cases where the provider repo isn't checked out locally but you still want a record, or any contract whose provider and consumer simply don't share a surface the extractors know how to pattern-match.
+
+History: the manifest extractor used to be silently skipped by the sync pipeline; that was fixed in [#827](https://github.com/abhigyanpatwari/GitNexus/pull/827) (tracking issue #826). If you ever see `config.links` with zero cross-links in `contracts.json`, make sure you're on a build that includes that fix, then re-run `group sync`.
+
+## Troubleshooting
+
+1. **`contracts.json` is empty after a sync.** Either no member repo contained a recognizable gRPC pattern, or the extractors are disabled in `detect`. Confirm `detect.grpc: true` and re-run with `--verbose`.
+2. **A known provider/consumer pair doesn't cross-link.** Most common cause: the package segment differs. Check the raw contract ids with `gitnexus group contracts <name> --unmatched` — if you see two same-method contracts with different package prefixes, add a manifest `links:` entry to bridge them (no automatic rewrite rules yet).
+3. **`matchType: "manifest"` is missing entirely.** The extractor needs `config.links` to be non-empty and the sync pipeline to actually call it — verify you're on a post-#827 build. Empty contract rows for manifest links usually mean `resolveSymbol` couldn't find a graph match; the synthetic uid still lets cross-impact work, it just won't carry a file path.
+4. **Ambiguous proto warnings.** Look for `[grpc-extractor] Ambiguous proto resolution` in the sync logs; that means a service name exists in multiple `.proto` files under the same repo and the path-distance heuristic couldn't pick a winner. Resolve by renaming the service or declaring the intended pairing in `config.links`.
+5. **Cross-impact says "stale".** Both sides need a fresh per-repo index _and_ a fresh group sync. Order matters: `gitnexus analyze` in each changed repo, then `gitnexus group sync <name>`. Use `gitnexus group status <name>` to see which side is behind.
+
+## Related docs and references
+
+- [AGENTS.md](../../AGENTS.md) — authoritative list of MCP tools and resources, including group-mode routing and the `gitnexus://group/…` resources.
+- [ARCHITECTURE.md](../../ARCHITECTURE.md) — overall data flow and the call-resolution DAG that the per-repo indexer uses.
+- [`gitnexus/src/core/group/`](../../gitnexus/src/core/group/) — `service.ts`, `sync.ts`, `config-parser.ts`, `matching.ts`.
+- [`gitnexus/src/core/group/extractors/grpc-extractor.ts`](../../gitnexus/src/core/group/extractors/grpc-extractor.ts) and [`grpc-patterns/`](../../gitnexus/src/core/group/extractors/grpc-patterns/) — gRPC detection.
+- [`gitnexus/src/core/group/extractors/manifest-extractor.ts`](../../gitnexus/src/core/group/extractors/manifest-extractor.ts) — the `config.links` escape hatch.
+- [`gitnexus/src/mcp/tools.ts`](../../gitnexus/src/mcp/tools.ts) — MCP tool schemas (`group_list`, `group_sync`, plus `@<group>` routing on `impact` / `query` / `context`).
+- [`gitnexus/src/cli/group.ts`](../../gitnexus/src/cli/group.ts) — CLI command definitions and flags.
+- Upstream issues: [#701](https://github.com/abhigyanpatwari/GitNexus/issues/701), [#826](https://github.com/abhigyanpatwari/GitNexus/issues/826), [#906](https://github.com/abhigyanpatwari/GitNexus/issues/906).

gitnexus-shared/package-lock.json

@@ -8,13 +8,13 @@
       "name": "gitnexus-shared",
       "version": "1.0.0",
       "devDependencies": {
-        "typescript": "^6.0.2"
+        "typescript": "^6.0.3"
       }
     },
     "node_modules/typescript": {
-      "version": "6.0.2",
-      "resolved": "https://registry.npmjs.org/typescript/-/typescript-6.0.2.tgz",
-      "integrity": "sha512-bGdAIrZ0wiGDo5l8c++HWtbaNCWTS4UTv7RaTH/ThVIgjkveJt83m74bBHMJkuCbslY8ixgLBVZJIOiQlQTjfQ==",
+      "version": "6.0.3",
+      "resolved": "https://registry.npmjs.org/typescript/-/typescript-6.0.3.tgz",
+      "integrity": "sha512-y2TvuxSZPDyQakkFRPZHKFm+KKVqIisdg9/CZwm9ftvKXLP8NRWj38/ODjNbr43SsoXqNuAisEf1GdCxqWcdBw==",
       "dev": true,
       "license": "Apache-2.0",
       "bin": {

gitnexus-shared/package.json

@@ -20,6 +20,6 @@
     "src"
   ],
   "devDependencies": {
-    "typescript": "^6.0.2"
+    "typescript": "^6.0.3"
   }
 }

gitnexus-shared/src/graph/types.ts

@@ -131,4 +131,20 @@ export interface GraphRelationship {
   confidence: number;
   reason: string;
   step?: number;
+  /**
+   * Per-signal evidence trace for edges emitted by the scope-based
+   * resolution pipeline (RFC #909 Ring 2 PKG #925). Populated by
+   * `emit-references.ts` when draining `ReferenceIndex` into the graph
+   * so downstream query / audit tools can inspect *why* a given edge
+   * was emitted with its confidence value.
+   *
+   * Optional and additive — every existing edge emitter ignores this
+   * field, and every existing query continues to work whether or not
+   * an edge carries it.
+   */
+  evidence?: readonly {
+    readonly kind: string;
+    readonly weight: number;
+    readonly note?: string;
+  }[];
 }

gitnexus-shared/src/index.ts

@@ -23,3 +23,128 @@ export type { MroStrategy } from './mro-strategy.js';
 
 // Pipeline progress
 export type { PipelinePhase, PipelineProgress } from './pipeline.js';
+
+// ─── Scope-based resolution — RFC #909 (Ring 1 #910) ────────────────────────
+// Data model (RFC §2)
+export type { SymbolDefinition } from './scope-resolution/symbol-definition.js';
+export type {
+  ScopeId,
+  DefId,
+  ScopeKind,
+  Range,
+  Capture,
+  CaptureMatch,
+  BindingRef,
+  ImportEdge,
+  TypeRef,
+  Scope,
+  ResolutionEvidence,
+  Resolution,
+  Reference,
+  ReferenceIndex,
+  LookupParams,
+  RegistryContributor,
+  ParsedImport,
+  ParsedTypeBinding,
+  WorkspaceIndex,
+  Callsite,
+  ScopeLookup,
+} from './scope-resolution/types.js';
+
+// Evidence + tie-break constants (RFC Appendix A, Appendix B)
+export { EvidenceWeights, typeBindingWeightAtDepth } from './scope-resolution/evidence-weights.js';
+export { ORIGIN_PRIORITY } from './scope-resolution/origin-priority.js';
+export type { OriginForTieBreak } from './scope-resolution/origin-priority.js';
+
+// Language classification (RFC §6.1 Ring 3/4 governance)
+export {
+  LanguageClassifications,
+  isProductionLanguage,
+} from './scope-resolution/language-classification.js';
+export type { LanguageClassification } from './scope-resolution/language-classification.js';
+
+// Core indexes over per-file artifacts (RFC §3.1; Ring 2 SHARED #913)
+export { buildDefIndex } from './scope-resolution/def-index.js';
+export type { DefIndex } from './scope-resolution/def-index.js';
+export { buildModuleScopeIndex } from './scope-resolution/module-scope-index.js';
+export type { ModuleScopeIndex, ModuleScopeEntry } from './scope-resolution/module-scope-index.js';
+export { buildQualifiedNameIndex } from './scope-resolution/qualified-name-index.js';
+export type { QualifiedNameIndex } from './scope-resolution/qualified-name-index.js';
+
+// Strict type-reference resolver (RFC §4.6; Ring 2 SHARED #916)
+// `ScopeLookup` is defined in `./scope-resolution/types.js` and exported
+// from the type-export block above — not from this module.
+export { resolveTypeRef } from './scope-resolution/resolve-type-ref.js';
+export type { ResolveTypeRefContext } from './scope-resolution/resolve-type-ref.js';
+
+// ScopeExtractor output contracts (RFC §3.2 Phase 1; Ring 2 PKG #919)
+export type { ParsedFile } from './scope-resolution/parsed-file.js';
+export type { ReferenceSite, ReferenceKind, CallForm } from './scope-resolution/reference-site.js';
+
+// Method-dispatch materialized view over HeritageMap (RFC §3.1; Ring 2 SHARED #914)
+export { buildMethodDispatchIndex } from './scope-resolution/method-dispatch-index.js';
+export type {
+  MethodDispatchIndex,
+  MethodDispatchInput,
+} from './scope-resolution/method-dispatch-index.js';
+
+// SCC-aware cross-file finalize (RFC §3.2 Phase 2; Ring 2 SHARED #915)
+export { finalize } from './scope-resolution/finalize-algorithm.js';
+export type {
+  FinalizeInput,
+  FinalizeFile,
+  FinalizeHooks,
+  FinalizeOutput,
+  FinalizedScc,
+  FinalizeStats,
+} from './scope-resolution/finalize-algorithm.js';
+
+// Scope-aware registries + 7-step lookup (RFC §4; Ring 2 SHARED #917)
+export { buildClassRegistry } from './scope-resolution/registries/class-registry.js';
+export type { ClassRegistry } from './scope-resolution/registries/class-registry.js';
+export { buildMethodRegistry } from './scope-resolution/registries/method-registry.js';
+export type {
+  MethodRegistry,
+  MethodLookupOptions,
+} from './scope-resolution/registries/method-registry.js';
+export { buildFieldRegistry } from './scope-resolution/registries/field-registry.js';
+export type {
+  FieldRegistry,
+  FieldLookupOptions,
+} from './scope-resolution/registries/field-registry.js';
+export { lookupCore } from './scope-resolution/registries/lookup-core.js';
+export type { CoreLookupParams } from './scope-resolution/registries/lookup-core.js';
+export { lookupQualified } from './scope-resolution/registries/lookup-qualified.js';
+export type { LookupQualifiedParams } from './scope-resolution/registries/lookup-qualified.js';
+export { composeEvidence, confidenceFromEvidence } from './scope-resolution/registries/evidence.js';
+export type { RawSignals } from './scope-resolution/registries/evidence.js';
+export {
+  compareByConfidenceWithTiebreaks,
+  CONFIDENCE_EPSILON,
+} from './scope-resolution/registries/tie-breaks.js';
+export type { TieBreakKey } from './scope-resolution/registries/tie-breaks.js';
+export { CLASS_KINDS, METHOD_KINDS, FIELD_KINDS } from './scope-resolution/registries/context.js';
+export type {
+  RegistryContext,
+  RegistryProviders,
+  OwnerScopedContributor,
+  ArityVerdict,
+} from './scope-resolution/registries/context.js';
+
+// Scope tree spine + position lookup (RFC §2.2 + §3.1; Ring 2 SHARED #912)
+export { makeScopeId, clearScopeIdInternPool } from './scope-resolution/scope-id.js';
+export type { ScopeIdInput } from './scope-resolution/scope-id.js';
+export { buildScopeTree, ScopeTreeInvariantError } from './scope-resolution/scope-tree.js';
+export type { ScopeTree } from './scope-resolution/scope-tree.js';
+export { buildPositionIndex } from './scope-resolution/position-index.js';
+export type { PositionIndex } from './scope-resolution/position-index.js';
+
+// Shadow-mode diff + aggregation (RFC §6.3; Ring 2 SHARED #918)
+export { diffResolutions } from './scope-resolution/shadow/diff.js';
+export type {
+  ShadowAgreement,
+  ShadowCallsite,
+  ShadowDiff,
+} from './scope-resolution/shadow/diff.js';
+export { aggregateDiffs } from './scope-resolution/shadow/aggregate.js';
+export type { LanguageParityRow, ShadowParityReport } from './scope-resolution/shadow/aggregate.js';

gitnexus-shared/src/mro-strategy.ts

@@ -1,23 +1,46 @@
 /**
- * MRO (Method Resolution Order) strategy — shared between CLI and any
- * future consumer that reasons about multiple-inheritance semantics.
+ * MRO (Method Resolution Order) strategy — shared canonical definition.
  *
- * Lives in `gitnexus-shared` so the low-level resolution module
- * (`core/ingestion/model/resolve.ts`) does not need to import from
- * `languages/` — keeping the `model/` layer free of language-registry
- * coupling.
+ * Lives in `gitnexus-shared` so `model/resolve.ts` and `mro-processor.ts` share
+ * the type without importing the language registry (avoids circular coupling).
  *
- * Strategy semantics:
- * - `first-wins`:       BFS ancestor walk, first match wins (default).
- * - `leftmost-base`:    BFS ancestor walk, leftmost base wins (C++).
- * - `c3`:               C3-linearized ancestor order, first match wins (Python).
- * - `implements-split`: BFS walk, first match wins (Java/C#/Kotlin) — full
- *                       interface-default ambiguity is handled at graph level.
- * - `qualified-syntax`: No auto-resolution (Rust — requires `<T as Trait>::m`).
+ * `first-wins` (default, Java/C#/Kotlin/Go/Swift/Dart):
+ *   BFS ancestor walk in declaration order; first match wins.
+ *
+ * `leftmost-base` (C++):
+ *   BFS walk; HeritageMap preserves source insertion order, so BFS naturally
+ *   picks the leftmost base in diamond inheritance.
+ *
+ * `c3` (Python):
+ *   C3-linearization; falls back to BFS on cyclic/inconsistent hierarchy.
+ *   See model/resolve.ts § c3Linearize.
+ *
+ * `implements-split` (Java/C#/Kotlin):
+ *   Low-level lookup is BFS; graph-level mro-processor detects and warns on
+ *   interface-default method ambiguity.
+ *
+ * `qualified-syntax` (Rust):
+ *   No auto-resolution — `lookupMethodByOwnerWithMRO` returns undefined immediately.
+ *   Rust requires explicit `<Type as Trait>::method` syntax.
+ *
+ * `ruby-mixin` (Ruby):
+ *   Kind-aware walk that does NOT short-circuit on direct owner first (`prepend`
+ *   must beat the class's own method). Walk order:
+ *     1. Prepend providers (reverse declaration — last-prepended wins)
+ *     2. Direct owner's own methods
+ *     3. Include providers (reverse declaration)
+ *     4. Transitive ancestors (BFS fallback)
+ *   Singleton dispatch: caller passes `ancestryOverride` (extend providers only);
+ *   becomes a simple left-to-right scan. Miss NEVER falls through to file-scoped
+ *   lookup — null-routes or honors `fallback`.
+ *
+ * @see model/resolve.ts § lookupMethodByOwnerWithMRO
+ * @see languages/ruby.ts § selectDispatch
  */
 export type MroStrategy =
   | 'first-wins'
   | 'c3'
   | 'leftmost-base'
   | 'implements-split'
-  | 'qualified-syntax';
+  | 'qualified-syntax'
+  | 'ruby-mixin';

gitnexus-shared/src/scope-resolution/def-index.ts

@@ -0,0 +1,62 @@
+/**
+ * `DefIndex` — O(1) `DefId → SymbolDefinition` materialization.
+ *
+ * The global "what is this id?" lookup. Every per-kind registry (ClassRegistry,
+ * MethodRegistry, FieldRegistry) returns `DefId[]` and resolves them back to
+ * full `SymbolDefinition` records through this index — one central hash map,
+ * one allocation per def.
+ *
+ * Part of RFC #909 Ring 2 SHARED — #913.
+ *
+ * Consumed by: #917 (`Registry.lookup` implementations), #915 (SCC finalize).
+ */
+
+import type { SymbolDefinition } from './symbol-definition.js';
+import type { DefId } from './types.js';
+
+export interface DefIndex {
+  readonly byId: ReadonlyMap<DefId, SymbolDefinition>;
+  readonly size: number;
+  get(id: DefId): SymbolDefinition | undefined;
+  has(id: DefId): boolean;
+}
+
+/**
+ * Build a `DefIndex` from a flat list of `SymbolDefinition` records.
+ *
+ * **Collision policy: first-write-wins.** `DefId` is meant to be unique
+ * (`nodeId` is the stable graph identifier), so a collision indicates an
+ * upstream bug — most likely the same symbol parsed twice or a duplicate
+ * commit into the pipeline. Rather than silently overwriting with a later
+ * definition that may be partial or wrong, the first record wins and
+ * subsequent records for the same id are dropped. Pipeline bugs surface
+ * later as `has(id) === true` but the def looking older than expected,
+ * which is easier to debug than a silent overwrite.
+ *
+ * Pure function — safe to call repeatedly; no side effects.
+ */
+export function buildDefIndex(defs: readonly SymbolDefinition[]): DefIndex {
+  const byId = new Map<DefId, SymbolDefinition>();
+  for (const def of defs) {
+    if (byId.has(def.nodeId)) continue; // first-write-wins
+    byId.set(def.nodeId, def);
+  }
+  return wrapIndex(byId);
+}
+
+// ─── Internal ───────────────────────────────────────────────────────────────
+
+function wrapIndex(byId: Map<DefId, SymbolDefinition>): DefIndex {
+  return {
+    byId,
+    get size() {
+      return byId.size;
+    },
+    get(id: DefId): SymbolDefinition | undefined {
+      return byId.get(id);
+    },
+    has(id: DefId): boolean {
+      return byId.has(id);
+    },
+  };
+}

gitnexus-shared/src/scope-resolution/evidence-weights.ts

@@ -0,0 +1,90 @@
+/**
+ * `EvidenceWeights` — RFC Appendix A (authoritative values).
+ *
+ * Starting calibration for scope-based resolution. Shadow-first rollout
+ * tunes these against legacy DAG parity. Every `ResolutionEvidence.weight`
+ * value in the codebase MUST reference this map; inline magic numbers are a
+ * lint violation. Extends issue #429 (centralize hardcoded confidence values).
+ *
+ * Evidence composes additively inside `composeEvidence`; the sum is capped
+ * at 1.0 in `Resolution.confidence`.
+ */
+
+/**
+ * Authoritative weight map. Keys are a mix of `ResolutionEvidence.kind`
+ * values and special modifiers (scope-chain depth, MRO depth decay,
+ * unlinked-import multiplicative cap).
+ */
+export const EvidenceWeights = {
+  // ─── Where-found signals (visibility) ─────────────────────────────────────
+  /** `BindingRef.origin === 'local'` */
+  local: 0.55,
+  /** `BindingRef.origin === 'import'` */
+  import: 0.45,
+  /** `BindingRef.origin === 'reexport'` */
+  reexport: 0.4,
+  /** `BindingRef.origin === 'namespace'` */
+  namespace: 0.4,
+  /** `BindingRef.origin === 'wildcard'` */
+  wildcard: 0.3,
+
+  // ─── Scope-chain deduction (per-hop) ──────────────────────────────────────
+  /** Deducted per parent-hop taken (depth-0 = 0, depth-1 = −0.02, …). */
+  scopeChainPerDepth: -0.02,
+
+  // ─── Receiver-type-binding signal (decays by MRO depth) ───────────────────
+  /**
+   * Weight applied when the receiver's type binding resolves to a class that
+   * declares the candidate as a method/field. Decays by MRO depth: direct
+   * class = index 0; 1 parent hop = index 1; etc. Falls back to the last
+   * value for depths beyond the table.
+   */
+  typeBindingByMroDepth: [0.5, 0.42, 0.36, 0.32, 0.3] as const,
+
+  // ─── Corroborating signals ────────────────────────────────────────────────
+  /** `def.ownerId === resolvedReceiver.def.id` (exact owner match). */
+  ownerMatch: 0.2,
+  /** Explanatory only — retained for debuggability. Never discriminates
+   *  because surviving candidates already passed `acceptedKinds`. */
+  kindMatch: 0.0,
+
+  // ─── Arity compatibility (from `provider.arityCompatibility`) ─────────────
+  /** `provider.arityCompatibility(...) === 'compatible'` */
+  arityMatchCompatible: 0.1,
+  /** `provider.arityCompatibility(...) === 'unknown'` */
+  arityMatchUnknown: 0.0,
+  /** `provider.arityCompatibility(...) === 'incompatible'` — penalizes;
+   *  candidates filtered only when a compatible candidate exists. */
+  arityMatchIncompatible: -0.15,
+
+  // ─── Global fallback (only when nothing lexically visible) ────────────────
+  /** Hit via `QualifiedNameIndex.byQualifiedName`. */
+  globalQualified: 0.35,
+  /** Fallback hit in a `byName` index (and nothing was lexically visible). */
+  globalName: 0.1,
+
+  // ─── Degraded signals ─────────────────────────────────────────────────────
+  /** Call/reference flowing through a `dynamic-unresolved` edge. */
+  dynamicImportUnresolved: 0.02,
+
+  // ─── Unresolved-import cap (multiplicative, applied per-signal) ───────────
+  /**
+   * Multiplicative cap on the edge-derived evidence signal
+   * (`import`/`wildcard`/`reexport`/`namespace`) when
+   * `ImportEdge.linkStatus === 'unresolved'`. Independent corroborating
+   * signals on the same candidate (`owner-match`, `arity-match`,
+   * `type-binding`) are NOT penalized.
+   */
+  unlinkedImportMultiplier: 0.5,
+} as const;
+
+/**
+ * Look up the `type-binding` signal weight for a given MRO depth, falling
+ * back to the last tabulated value for depths beyond the table.
+ */
+export function typeBindingWeightAtDepth(mroDepth: number): number {
+  const table = EvidenceWeights.typeBindingByMroDepth;
+  if (mroDepth < 0) return table[0];
+  if (mroDepth >= table.length) return table[table.length - 1];
+  return table[mroDepth];
+}

gitnexus-shared/src/scope-resolution/finalize-algorithm.ts

@@ -0,0 +1,663 @@
+/**
+ * `finalize` — cross-file finalize algorithm for the SemanticModel
+ * (RFC §3.2 Phase 2; Ring 2 SHARED #915).
+ *
+ * Pure logic that takes per-file parse output (`ParsedImport[]` +
+ * `SymbolDefinition[]`) and returns:
+ *
+ *   - Linked `ImportEdge[]` per module scope, with `targetModuleScope` and
+ *     `targetDefId` filled where resolvable; edges that could not be
+ *     resolved within the hard fixpoint cap are marked
+ *     `linkStatus: 'unresolved'`.
+ *   - Materialized `bindings` per module scope — local defs merged with
+ *     imported / wildcard-expanded / re-exported names via the provider's
+ *     `mergeBindings` precedence.
+ *   - The SCC condensation of the import graph, exposed so disjoint SCCs
+ *     can be processed in parallel by callers that want that.
+ *
+ * The algorithm is **SCC-aware**: it runs Tarjan SCC over the file-level
+ * import graph, processes SCCs in reverse-topological order (leaves
+ * first), and within each SCC runs a bounded fixpoint link pass capped at
+ * `N = |edges in SCC|`. Cyclic imports finalize without hanging; malformed
+ * inputs are bounded by the cap.
+ *
+ * **No language-specific logic.** Target resolution, wildcard expansion,
+ * and binding precedence all go through caller-supplied hooks
+ * (`resolveImportTarget`, `expandsWildcardTo`, `mergeBindings`) that
+ * match the LanguageProvider surface from #911.
+ *
+ * **Dynamic imports rule.** `kind === 'dynamic-unresolved'` passes through
+ * as an `ImportEdge { kind: 'dynamic-unresolved', targetFile: null }`
+ * with no `BindingRef`. They are parse-time signals, not linkable targets.
+ */
+
+import type { SymbolDefinition } from './symbol-definition.js';
+import type { BindingRef, ImportEdge, ParsedImport, ScopeId, WorkspaceIndex } from './types.js';
+
+// ─── Public contracts ───────────────────────────────────────────────────────
+
+/** Per-file input for the finalize pass. */
+export interface FinalizeFile {
+  readonly filePath: string;
+  /** The module scope id for this file; owns the finalized imports + bindings. */
+  readonly moduleScope: ScopeId;
+  readonly parsedImports: readonly ParsedImport[];
+  /**
+   * Defs exported from this file — the "what other files can import by name"
+   * surface. Typically those with `isExported: true` (the module's own
+   * declarations) plus, for multi-hop re-export chains, the re-exported
+   * names the parser chose to surface here.
+   *
+   * **Multi-hop re-export contract.** `finalize` resolves an edge
+   * `A → B (importedName: 'X')` by looking up `X` in `B.localDefs`. If B
+   * only has `export { X } from './C'` and the parser *does not* include
+   * `X` in `B.localDefs`, A's edge hits the fixpoint cap and is marked
+   * `linkStatus: 'unresolved'`. The fixpoint does NOT mutate `localDefs`
+   * across iterations — it is static input.
+   *
+   * Parsers that want multi-hop re-export chains to settle end-to-end must
+   * include re-exported names in the intermediate file's `localDefs` (with
+   * the original `DefId` of the source symbol). This keeps the algorithm
+   * O(1) per lookup and avoids graph-crawl during finalize.
+   */
+  readonly localDefs: readonly SymbolDefinition[];
+}
+
+/** Input to `finalize`. */
+export interface FinalizeInput {
+  readonly files: readonly FinalizeFile[];
+  /** Opaque workspace context forwarded to provider hooks. */
+  readonly workspaceIndex: WorkspaceIndex;
+}
+
+/**
+ * Provider-supplied hooks. Mirror the optional LanguageProvider scope-
+ * resolution hooks declared in #911; `finalize` calls them pure-ly and
+ * expects pure answers.
+ */
+export interface FinalizeHooks {
+  /**
+   * Resolve a raw import target to the concrete file path that owns it.
+   * Return `null` when no target file is resolvable (e.g., `np.foo` when
+   * `numpy` is external to the workspace).
+   */
+  resolveImportTarget(
+    targetRaw: string,
+    fromFile: string,
+    workspaceIndex: WorkspaceIndex,
+  ): string | null;
+
+  /**
+   * For a wildcard `import * from M`, return the names visible in the
+   * exporting module scope `M`. The finalize pass looks each name up in
+   * `M`'s local defs to produce a concrete `BindingRef`; names with no
+   * matching export are dropped.
+   */
+  expandsWildcardTo(targetModuleScope: ScopeId, workspaceIndex: WorkspaceIndex): readonly string[];
+
+  /**
+   * Merge `incoming` bindings into `existing` for a given name. Called
+   * once per name at each scope. Typical rules:
+   *   - Python: local > imported > wildcard (last-write-wins within tier).
+   *   - Rust: explicit `use` > glob; `pub use` overrides.
+   * Return value replaces the bucket entirely — no implicit append.
+   */
+  mergeBindings(
+    existing: readonly BindingRef[],
+    incoming: readonly BindingRef[],
+    scope: ScopeId,
+  ): readonly BindingRef[];
+}
+
+/** One SCC in the file-level import graph. */
+export interface FinalizedScc {
+  readonly files: readonly string[];
+  /** True iff this SCC has ≥ 2 files OR a single file that self-imports. */
+  readonly isCycle: boolean;
+}
+
+/**
+ * Counters reported by `finalize`.
+ *
+ * **Counting granularity** — all edge counters are **per-`ParsedImport`**,
+ * not per-materialized-`ImportEdge`. A single `wildcard` ParsedImport that
+ * expands to N exports counts as one linked edge in these stats; the
+ * materialized output (`FinalizeOutput.imports`) will have N edges for
+ * that input. `dynamic-unresolved` ParsedImports count as linked (they
+ * pass through with no `linkStatus`), so `linkedEdges` ≠ "has a
+ * BindingRef" — use the `bindings` map for that.
+ *
+ * In other words: `totalEdges === input.parsedImports.length` summed
+ * across files, and `linkedEdges + unresolvedEdges === totalEdges`.
+ */
+export interface FinalizeStats {
+  readonly totalFiles: number;
+  /** Total `ParsedImport` records seen across all files. */
+  readonly totalEdges: number;
+  /**
+   * `ParsedImport`s whose finalized edge does NOT carry
+   * `linkStatus: 'unresolved'`. Includes `dynamic-unresolved` pass-throughs.
+   */
+  readonly linkedEdges: number;
+  /** `ParsedImport`s whose finalized edge carries `linkStatus: 'unresolved'`. */
+  readonly unresolvedEdges: number;
+  readonly sccCount: number;
+  readonly largestSccSize: number;
+}
+
+export interface FinalizeOutput {
+  /** Linked `ImportEdge[]` per module scope, in original input order. */
+  readonly imports: ReadonlyMap<ScopeId, readonly ImportEdge[]>;
+  /** Materialized bindings per module scope. */
+  readonly bindings: ReadonlyMap<ScopeId, ReadonlyMap<string, readonly BindingRef[]>>;
+  /** SCCs in reverse-topological order (leaves first). */
+  readonly sccs: readonly FinalizedScc[];
+  readonly stats: FinalizeStats;
+}
+
+// ─── Entry point ───────────────────────────────────────────────────────────
+
+export function finalize(input: FinalizeInput, hooks: FinalizeHooks): FinalizeOutput {
+  const byFilePath = new Map<string, FinalizeFile>();
+  for (const f of input.files) byFilePath.set(f.filePath, f);
+
+  // ── Phase 0: pre-resolve raw import targets (one syscall-equivalent per
+  // (file, parsedImport)). Edges with no resolvable target become
+  // `linkStatus: 'unresolved'` or, for dynamic-unresolved, pass through
+  // with `targetFile: null`.
+  const edgeIndex = new Map<string, ImportEdgeDraft[]>(); // filePath → drafts
+  let totalEdges = 0;
+
+  for (const file of input.files) {
+    const drafts: ImportEdgeDraft[] = [];
+    for (const parsed of file.parsedImports) {
+      const draft = makeEdgeDraft(parsed, file, hooks, input.workspaceIndex);
+      drafts.push(draft);
+      totalEdges++;
+    }
+    edgeIndex.set(file.filePath, drafts);
+  }
+
+  // ── Phase 1: build file-level import graph (only resolvable edges form
+  // graph edges; unresolvable ones are terminal and contribute no
+  // fixpoint obligation).
+  const graph = new Map<string, Set<string>>();
+  for (const file of input.files) {
+    graph.set(file.filePath, new Set());
+  }
+  for (const [fromFile, drafts] of edgeIndex) {
+    const edges = graph.get(fromFile)!;
+    for (const d of drafts) {
+      if (d.targetFile !== null && byFilePath.has(d.targetFile)) {
+        edges.add(d.targetFile);
+      }
+    }
+  }
+
+  // ── Phase 2: Tarjan SCC → reverse-topological list of SCCs.
+  const sccs = tarjanSccs(graph);
+
+  // ── Phase 3: process SCCs in reverse-topological order (leaves first).
+  // Within each SCC, run a bounded fixpoint that resolves intra-SCC edges.
+  // Edges leaving the SCC are already resolved (their target SCC is
+  // already finalized); edges inside the SCC may need multiple passes.
+  const linkedByScope = new Map<ScopeId, readonly ImportEdge[]>();
+  let linkedEdges = 0;
+
+  for (const scc of sccs) {
+    const sccFiles = new Set(scc.files);
+    const capacity = countEdgesWithin(edgeIndex, sccFiles);
+
+    // Run the fixpoint up to `capacity` iterations. Each iteration tries to
+    // resolve every still-unlinked edge in the SCC; stops early if a pass
+    // makes no progress.
+    let progressed = true;
+    let iterations = 0;
+    while (progressed && iterations < capacity) {
+      progressed = false;
+      iterations++;
+      for (const filePath of scc.files) {
+        const drafts = edgeIndex.get(filePath)!;
+        for (const draft of drafts) {
+          if (draft.finalized !== null) continue;
+          const finalized = tryFinalize(draft, byFilePath);
+          if (finalized !== null) {
+            draft.finalized = finalized;
+            progressed = true;
+          }
+        }
+      }
+    }
+
+    // Any drafts still not finalized within this SCC hit the cap → unresolved.
+    for (const filePath of scc.files) {
+      const drafts = edgeIndex.get(filePath)!;
+      for (const draft of drafts) {
+        if (draft.finalized !== null) continue;
+        draft.finalized = {
+          ...draft.base,
+          linkStatus: 'unresolved' as const,
+        };
+      }
+    }
+  }
+
+  // ── Phase 4: collect finalized `ImportEdge[]` per module scope, preserving
+  // input order within each file, and wildcard-expand where applicable.
+  for (const file of input.files) {
+    const drafts = edgeIndex.get(file.filePath)!;
+    const finalized: ImportEdge[] = [];
+    for (const d of drafts) {
+      const edge = d.finalized!;
+      if (d.source.kind === 'wildcard' && edge.linkStatus !== 'unresolved') {
+        // Produce one `wildcard-expanded` ImportEdge per exported name.
+        const expanded = expandWildcard(edge, byFilePath, hooks, input.workspaceIndex);
+        for (const e of expanded) finalized.push(e);
+      } else {
+        finalized.push(edge);
+      }
+      if (edge.linkStatus !== 'unresolved') linkedEdges++;
+    }
+    linkedByScope.set(file.moduleScope, Object.freeze(finalized));
+  }
+
+  // ── Phase 5: materialize module-scope bindings (local + imports + wildcards),
+  // delegating precedence to `provider.mergeBindings`.
+  const bindingsByScope = materializeBindings(input.files, linkedByScope, hooks);
+
+  // ── Stats.
+  const sccCount = sccs.length;
+  let largestSccSize = 0;
+  for (const scc of sccs) {
+    if (scc.files.length > largestSccSize) largestSccSize = scc.files.length;
+  }
+  const stats: FinalizeStats = {
+    totalFiles: input.files.length,
+    totalEdges,
+    linkedEdges,
+    unresolvedEdges: totalEdges - linkedEdges,
+    sccCount,
+    largestSccSize,
+  };
+
+  return Object.freeze({
+    imports: linkedByScope,
+    bindings: bindingsByScope,
+    sccs,
+    stats,
+  });
+}
+
+// ─── Internal: edge drafting (phase 0) ──────────────────────────────────────
+
+interface ImportEdgeDraft {
+  readonly source: ParsedImport;
+  readonly fromFile: string;
+  readonly fromScope: ScopeId;
+  readonly targetFile: string | null;
+  readonly base: ImportEdge;
+  finalized: ImportEdge | null;
+}
+
+function makeEdgeDraft(
+  parsed: ParsedImport,
+  file: FinalizeFile,
+  hooks: FinalizeHooks,
+  workspace: WorkspaceIndex,
+): ImportEdgeDraft {
+  // Dynamic-unresolved passes through — no `BindingRef`, no target file.
+  if (parsed.kind === 'dynamic-unresolved') {
+    const base: ImportEdge = {
+      localName: parsed.localName,
+      targetFile: null,
+      targetExportedName: '',
+      kind: 'dynamic-unresolved',
+    };
+    return {
+      source: parsed,
+      fromFile: file.filePath,
+      fromScope: file.moduleScope,
+      targetFile: null,
+      base,
+      finalized: base, // already fully finalized
+    };
+  }
+
+  const targetFile = hooks.resolveImportTarget(parsed.targetRaw ?? '', file.filePath, workspace);
+
+  // Edge is unresolvable at the file level — mark unresolved now.
+  if (targetFile === null) {
+    const edgeKind = parsed.kind === 'wildcard' ? 'wildcard-expanded' : parsed.kind;
+    const localName = parsed.kind === 'wildcard' ? '' : parsed.localName;
+    const targetExportedName = extractExportedName(parsed);
+    const base: ImportEdge = {
+      localName,
+      targetFile: null,
+      targetExportedName,
+      kind: edgeKind,
+      linkStatus: 'unresolved',
+    };
+    return {
+      source: parsed,
+      fromFile: file.filePath,
+      fromScope: file.moduleScope,
+      targetFile: null,
+      base,
+      finalized: base,
+    };
+  }
+
+  // Resolvable at the file level; intra-SCC fixpoint may still fail to fill
+  // in `targetDefId` (e.g., symbol not exported from target).
+  const edgeKind = parsed.kind === 'wildcard' ? 'wildcard-expanded' : parsed.kind;
+  const localName = parsed.kind === 'wildcard' ? '' : parsed.localName;
+  const targetExportedName = extractExportedName(parsed);
+  const base: ImportEdge = {
+    localName,
+    targetFile,
+    targetExportedName,
+    kind: edgeKind,
+  };
+  return {
+    source: parsed,
+    fromFile: file.filePath,
+    fromScope: file.moduleScope,
+    targetFile,
+    base,
+    finalized: null,
+  };
+}
+
+function extractExportedName(parsed: ParsedImport): string {
+  switch (parsed.kind) {
+    case 'named':
+    case 'alias':
+    case 'namespace':
+    case 'reexport':
+      return parsed.importedName;
+    case 'wildcard':
+    case 'dynamic-unresolved':
+      return '';
+  }
+}
+
+// ─── Internal: per-edge finalization (phase 3) ─────────────────────────────
+
+function tryFinalize(
+  draft: ImportEdgeDraft,
+  byFilePath: Map<string, FinalizeFile>,
+): ImportEdge | null {
+  const targetFile = draft.targetFile;
+  if (targetFile === null) return draft.base; // already terminal
+
+  const targetModule = byFilePath.get(targetFile);
+  if (targetModule === undefined) return draft.base; // external target — leave as-is
+
+  // Wildcards finalize at the file level; their per-name expansion happens
+  // in phase 4. At this stage we just record the target module scope.
+  if (draft.source.kind === 'wildcard') {
+    return {
+      ...draft.base,
+      targetModuleScope: targetModule.moduleScope,
+    };
+  }
+
+  // Namespace imports alias the target *module*; they don't name a
+  // specific export. Link the module scope unconditionally. If the target
+  // also exposes a def whose simple name matches `importedName` (some
+  // languages emit a synthetic module-def), pick it up as the `targetDefId`
+  // so consumers can reach the module as a symbol — but its absence is not
+  // a failure.
+  if (draft.source.kind === 'namespace') {
+    const moduleDef = findExportByName(targetModule.localDefs, extractExportedName(draft.source));
+    return {
+      ...draft.base,
+      targetModuleScope: targetModule.moduleScope,
+      ...(moduleDef !== undefined ? { targetDefId: moduleDef.nodeId } : {}),
+    };
+  }
+
+  // named / alias / reexport: look up the imported name in the target's
+  // local defs. Multi-hop re-export chains settle iteratively — each hop
+  // resolves once its prior hop is finalized.
+  const importedName = extractExportedName(draft.source);
+  const exported = findExportByName(targetModule.localDefs, importedName);
+
+  if (exported === undefined) {
+    // Target resolvable but the name isn't exported — keep trying in case a
+    // re-export inside the target's SCC surfaces it in a later iteration.
+    return null;
+  }
+
+  const transitiveVia = draft.source.kind === 'reexport' ? Object.freeze([targetFile]) : undefined;
+
+  return {
+    ...draft.base,
+    targetModuleScope: targetModule.moduleScope,
+    targetDefId: exported.nodeId,
+    ...(transitiveVia !== undefined ? { transitiveVia } : {}),
+  };
+}
+
+/**
+ * The "simple" (unqualified) name of a def, for import-name matching.
+ *
+ * Canonical source: `def.qualifiedName` — the tail after the last `.` (or
+ * the whole string if no dot). Defs without a qualifiedName can't be
+ * resolved by name here and return `null`; callers treat that as "name
+ * not exported" and either retry in a later fixpoint iteration or mark
+ * the edge unresolved.
+ */
+function deriveSimpleName(def: SymbolDefinition): string | null {
+  const q = def.qualifiedName;
+  if (q === undefined || q.length === 0) return null;
+  const dot = q.lastIndexOf('.');
+  return dot === -1 ? q : q.slice(dot + 1);
+}
+
+function findExportByName(
+  defs: readonly SymbolDefinition[],
+  name: string,
+): SymbolDefinition | undefined {
+  for (const d of defs) {
+    if (deriveSimpleName(d) === name) return d;
+  }
+  return undefined;
+}
+
+function countEdgesWithin(edgeIndex: Map<string, ImportEdgeDraft[]>, files: Set<string>): number {
+  let n = 0;
+  for (const filePath of files) {
+    const drafts = edgeIndex.get(filePath);
+    if (drafts === undefined) continue;
+    for (const d of drafts) {
+      if (d.targetFile !== null && files.has(d.targetFile)) n++;
+    }
+  }
+  // Guarantee at least one pass even for a trivial SCC (ensures deterministic
+  // fixpoint termination even when a single-file SCC has zero intra-SCC edges
+  // but still needs one settle pass).
+  return Math.max(n, 1);
+}
+
+// ─── Internal: wildcard expansion (phase 4) ────────────────────────────────
+
+function expandWildcard(
+  edge: ImportEdge,
+  byFilePath: Map<string, FinalizeFile>,
+  hooks: FinalizeHooks,
+  workspace: WorkspaceIndex,
+): readonly ImportEdge[] {
+  if (edge.targetModuleScope === undefined || edge.targetFile === null) {
+    return [edge]; // unresolvable wildcard survives as a single unlinked edge
+  }
+  const target = byFilePath.get(edge.targetFile);
+  if (target === undefined) return [edge];
+
+  const names = hooks.expandsWildcardTo(edge.targetModuleScope, workspace);
+  if (names.length === 0) return [];
+
+  const expanded: ImportEdge[] = [];
+  for (const name of names) {
+    const def = findExportByName(target.localDefs, name);
+    if (def === undefined) continue;
+    expanded.push({
+      localName: name,
+      targetFile: edge.targetFile,
+      targetExportedName: name,
+      kind: 'wildcard-expanded',
+      targetModuleScope: edge.targetModuleScope,
+      targetDefId: def.nodeId,
+    });
+  }
+  return expanded;
+}
+
+// ─── Internal: bindings materialization (phase 5) ───────────────────────────
+
+function materializeBindings(
+  files: readonly FinalizeFile[],
+  linkedByScope: ReadonlyMap<ScopeId, readonly ImportEdge[]>,
+  hooks: FinalizeHooks,
+): ReadonlyMap<ScopeId, ReadonlyMap<string, readonly BindingRef[]>> {
+  const out = new Map<ScopeId, ReadonlyMap<string, readonly BindingRef[]>>();
+
+  for (const file of files) {
+    const scopeBindings = new Map<string, readonly BindingRef[]>();
+
+    // Start with local defs as `origin: 'local'` bindings.
+    for (const def of file.localDefs) {
+      const name = deriveSimpleName(def);
+      if (name === null) continue;
+      const incoming: BindingRef[] = [{ def, origin: 'local' }];
+      const existing = scopeBindings.get(name) ?? [];
+      scopeBindings.set(name, hooks.mergeBindings(existing, incoming, file.moduleScope));
+    }
+
+    // Layer in finalized imports.
+    const imports = linkedByScope.get(file.moduleScope) ?? [];
+    for (const edge of imports) {
+      if (edge.targetDefId === undefined || edge.linkStatus === 'unresolved') continue;
+      // Every def the importing file needs to reach is in some other file's
+      // `localDefs`; walk all files to find it. In practice we could index
+      // this, but at finalize-time N(files) is small per workspace pass.
+      const def = findDefById(files, edge.targetDefId);
+      if (def === undefined) continue;
+
+      const origin: BindingRef['origin'] =
+        edge.kind === 'namespace'
+          ? 'namespace'
+          : edge.kind === 'wildcard-expanded'
+            ? 'wildcard'
+            : edge.kind === 'reexport'
+              ? 'reexport'
+              : 'import';
+      const fallback = deriveSimpleName(def);
+      const name = edge.localName.length > 0 ? edge.localName : fallback;
+      if (name === null) continue;
+      const incoming: BindingRef[] = [{ def, origin, via: edge }];
+      const existing = scopeBindings.get(name) ?? [];
+      scopeBindings.set(name, hooks.mergeBindings(existing, incoming, file.moduleScope));
+    }
+
+    // Freeze nested buckets for immutability.
+    const frozen = new Map<string, readonly BindingRef[]>();
+    for (const [name, refs] of scopeBindings) {
+      frozen.set(name, Object.freeze(refs.slice()));
+    }
+    out.set(file.moduleScope, frozen);
+  }
+
+  return out;
+}
+
+function findDefById(files: readonly FinalizeFile[], defId: string): SymbolDefinition | undefined {
+  for (const f of files) {
+    for (const d of f.localDefs) {
+      if (d.nodeId === defId) return d;
+    }
+  }
+  return undefined;
+}
+
+// ─── Internal: Tarjan SCC ──────────────────────────────────────────────────
+
+/**
+ * Iterative Tarjan SCC. Returns SCCs in **reverse-topological** order
+ * (leaves first — a property Tarjan gives for free, and the order
+ * `finalize` wants so leaves are fully resolved before their dependents).
+ */
+function tarjanSccs(graph: ReadonlyMap<string, ReadonlySet<string>>): FinalizedScc[] {
+  const index = new Map<string, number>();
+  const lowlink = new Map<string, number>();
+  const onStack = new Set<string>();
+  const stack: string[] = [];
+  const sccs: FinalizedScc[] = [];
+  let idx = 0;
+
+  // Iterative DFS to avoid stack overflow on deep import chains.
+  const allNodes = Array.from(graph.keys()).sort(); // deterministic order
+  const iterStack: Array<{ node: string; children: Iterator<string>; entered: boolean }> = [];
+
+  for (const root of allNodes) {
+    if (index.has(root)) continue;
+    iterStack.push({
+      node: root,
+      children: (graph.get(root) ?? new Set<string>()).values(),
+      entered: false,
+    });
+    while (iterStack.length > 0) {
+      const frame = iterStack[iterStack.length - 1]!;
+
+      if (!frame.entered) {
+        frame.entered = true;
+        index.set(frame.node, idx);
+        lowlink.set(frame.node, idx);
+        idx++;
+        stack.push(frame.node);
+        onStack.add(frame.node);
+      }
+
+      const nextChild = frame.children.next();
+      if (nextChild.done) {
+        // Post-visit: compute SCC membership if frame.node is a root.
+        if (lowlink.get(frame.node) === index.get(frame.node)) {
+          const scc: string[] = [];
+          let selfInCycle = false;
+          while (true) {
+            const w = stack.pop()!;
+            onStack.delete(w);
+            scc.push(w);
+            // A single-file self-loop counts as a cycle.
+            if (w === frame.node) {
+              selfInCycle = (graph.get(w) ?? new Set()).has(w);
+              break;
+            }
+          }
+          const isCycle = scc.length > 1 || selfInCycle;
+          sccs.push({ files: Object.freeze(scc), isCycle });
+        }
+        iterStack.pop();
+        // Propagate lowlink to parent.
+        if (iterStack.length > 0) {
+          const parent = iterStack[iterStack.length - 1]!;
+          lowlink.set(parent.node, Math.min(lowlink.get(parent.node)!, lowlink.get(frame.node)!));
+        }
+        continue;
+      }
+
+      const child = nextChild.value;
+      if (!index.has(child)) {
+        iterStack.push({
+          node: child,
+          children: (graph.get(child) ?? new Set<string>()).values(),
+          entered: false,
+        });
+      } else if (onStack.has(child)) {
+        lowlink.set(frame.node, Math.min(lowlink.get(frame.node)!, index.get(child)!));
+      }
+    }
+  }
+
+  return sccs;
+}

gitnexus-shared/src/scope-resolution/language-classification.ts

@@ -0,0 +1,49 @@
+/**
+ * `LanguageClassification` — RFC §6.1 Ring 3 / Ring 4 governance.
+ *
+ * Classifies each `SupportedLanguages` member for the rollout. Ring 4 (DAG
+ * retirement) is gated on *all production languages* being registry-primary
+ * and stable for one release cycle; `experimental` and `quarantined`
+ * languages do not block.
+ *
+ * Initial classification (locked in Ring 1 #910):
+ *   - production: javascript, typescript, python, java, c, cpp, csharp, go,
+ *                 ruby, rust, php, kotlin, swift, dart
+ *   - experimental: vue (embedded-language / SFC complexity),
+ *                   cobol (regex-provider path)
+ *   - quarantined: (none)
+ */
+
+import { SupportedLanguages } from '../languages.js';
+
+export type LanguageClassification = 'production' | 'experimental' | 'quarantined';
+
+/**
+ * The canonical classification for each supported language. Governance
+ * changes (promote `experimental` → `production`, quarantine a language, …)
+ * update this map in a dedicated PR.
+ */
+export const LanguageClassifications: Readonly<Record<SupportedLanguages, LanguageClassification>> =
+  {
+    [SupportedLanguages.JavaScript]: 'production',
+    [SupportedLanguages.TypeScript]: 'production',
+    [SupportedLanguages.Python]: 'production',
+    [SupportedLanguages.Java]: 'production',
+    [SupportedLanguages.C]: 'production',
+    [SupportedLanguages.CPlusPlus]: 'production',
+    [SupportedLanguages.CSharp]: 'production',
+    [SupportedLanguages.Go]: 'production',
+    [SupportedLanguages.Ruby]: 'production',
+    [SupportedLanguages.Rust]: 'production',
+    [SupportedLanguages.PHP]: 'production',
+    [SupportedLanguages.Kotlin]: 'production',
+    [SupportedLanguages.Swift]: 'production',
+    [SupportedLanguages.Dart]: 'production',
+    [SupportedLanguages.Vue]: 'experimental',
+    [SupportedLanguages.Cobol]: 'experimental',
+  };
+
+/** Convenience predicate: is this language gating Ring 4 retirement? */
+export function isProductionLanguage(lang: SupportedLanguages): boolean {
+  return LanguageClassifications[lang] === 'production';
+}

gitnexus-shared/src/scope-resolution/method-dispatch-index.ts

@@ -0,0 +1,145 @@
+/**
+ * `MethodDispatchIndex` — materialized view of class hierarchies keyed by
+ * `DefId` (RFC §3.1; Ring 2 SHARED #914).
+ *
+ * Two O(1)-access maps used by `Registry.lookupMethod` and interface-
+ * dispatch callers:
+ *
+ *   - `mroByOwnerDefId`       : owner class → full MRO ancestor chain
+ *                               (excludes the owner itself, in per-language
+ *                               strategy order).
+ *   - `implsByInterfaceDefId` : interface/trait → classes that implement it.
+ *
+ * **Not an MRO implementation.** The build function is a pure aggregator: it
+ * asks the caller (via `computeMro` and `implementsOf` callbacks) for the
+ * per-language answers and materializes the two-way index. MRO strategies
+ * live where they already do today (`model/resolve.ts § c3Linearize`,
+ * `languages/ruby.ts § selectDispatch`, etc.) — this index does not
+ * reimplement them.
+ *
+ * Why callbacks and not a shared strategy registry: the five strategies
+ * (Python C3, Ruby kind-aware, Java/Kotlin linear, Rust qualified-syntax,
+ * COBOL none) already exist in the CLI package and depend on the CLI's
+ * `HeritageMap` + `SemanticModel`. Pulling them into `gitnexus-shared` would
+ * require migrating both — out of scope for #914. Callbacks let the shared
+ * build stay pure while honoring existing strategies verbatim.
+ *
+ * Consumed by: #917 (`Registry.lookupMethod` MRO fast path, interface
+ * dispatch resolver).
+ */
+
+import type { DefId } from './types.js';
+
+// ─── Public contracts ───────────────────────────────────────────────────────
+
+export interface MethodDispatchIndex {
+  /**
+   * Full MRO ancestor chain per owner class (excludes the owner itself).
+   * Order reflects the per-language strategy used by `computeMro`.
+   */
+  readonly mroByOwnerDefId: ReadonlyMap<DefId, readonly DefId[]>;
+  /** Interfaces / traits → classes that implement them. */
+  readonly implsByInterfaceDefId: ReadonlyMap<DefId, readonly DefId[]>;
+
+  /** `mroByOwnerDefId.get`, with an empty frozen array on miss. */
+  mroFor(ownerDefId: DefId): readonly DefId[];
+  /** `implsByInterfaceDefId.get`, with an empty frozen array on miss. */
+  implementorsOf(interfaceDefId: DefId): readonly DefId[];
+}
+
+export interface MethodDispatchInput {
+  /**
+   * Owner defs to index (classes, structs, traits, interfaces — any kind
+   * that can appear on the owner side of a method-dispatch graph).
+   */
+  readonly owners: readonly DefId[];
+  /**
+   * Return the full MRO ancestor chain for `ownerDefId`, **excluding the
+   * owner itself**, in the order dictated by the owner's language-specific
+   * MRO strategy.
+   *
+   * Contract:
+   *   - Pure (no side effects).
+   *   - Deterministic per input.
+   *   - `undefined` not allowed — return `[]` when the owner has no parents.
+   */
+  readonly computeMro: (ownerDefId: DefId) => readonly DefId[];
+  /**
+   * Return the set of interface/trait defs that `ownerDefId` implements.
+   * Transitive inclusion (e.g., `implements` on a parent class) is the
+   * caller's choice — the build function simply inverts whatever is
+   * returned.
+   *
+   * Repeated IDs in the output are deduplicated automatically.
+   *
+   * **Call-count contract.** `implementsOf` is invoked **once per
+   * occurrence** of an owner in `input.owners`, not once per unique
+   * owner. Duplicate owners therefore re-invoke it; dedup happens at
+   * the bucket layer (after the callback returns). Callers with
+   * expensive `implementsOf` implementations should pass a deduplicated
+   * `owners` list. `computeMro`, by contrast, is memoized by the first-
+   * write-wins policy and fires at most once per unique owner.
+   */
+  readonly implementsOf: (ownerDefId: DefId) => readonly DefId[];
+}
+
+// ─── Builder ────────────────────────────────────────────────────────────────
+
+export function buildMethodDispatchIndex(input: MethodDispatchInput): MethodDispatchIndex {
+  const mroByOwnerDefId = new Map<DefId, readonly DefId[]>();
+  const implsBuilding = new Map<DefId, DefId[]>();
+  const implsSeen = new Map<DefId, Set<DefId>>();
+
+  for (const ownerId of input.owners) {
+    // First-write-wins on duplicate owner ids: a stable policy consistent
+    // with sibling indexes (#913 DefIndex / ModuleScopeIndex).
+    if (!mroByOwnerDefId.has(ownerId)) {
+      const chain = input.computeMro(ownerId);
+      mroByOwnerDefId.set(ownerId, Object.freeze(chain.slice()));
+    }
+
+    for (const ifaceId of input.implementsOf(ownerId)) {
+      let seen = implsSeen.get(ifaceId);
+      if (seen === undefined) {
+        seen = new Set<DefId>();
+        implsSeen.set(ifaceId, seen);
+      }
+      if (seen.has(ownerId)) continue;
+      seen.add(ownerId);
+
+      let bucket = implsBuilding.get(ifaceId);
+      if (bucket === undefined) {
+        bucket = [];
+        implsBuilding.set(ifaceId, bucket);
+      }
+      bucket.push(ownerId);
+    }
+  }
+
+  const implsByInterfaceDefId = new Map<DefId, readonly DefId[]>();
+  for (const [ifaceId, owners] of implsBuilding) {
+    implsByInterfaceDefId.set(ifaceId, Object.freeze(owners.slice()));
+  }
+
+  return wrapIndex(mroByOwnerDefId, implsByInterfaceDefId);
+}
+
+// ─── Internal ───────────────────────────────────────────────────────────────
+
+const EMPTY: readonly DefId[] = Object.freeze([]);
+
+function wrapIndex(
+  mroByOwnerDefId: Map<DefId, readonly DefId[]>,
+  implsByInterfaceDefId: Map<DefId, readonly DefId[]>,
+): MethodDispatchIndex {
+  return {
+    mroByOwnerDefId,
+    implsByInterfaceDefId,
+    mroFor(ownerDefId: DefId): readonly DefId[] {
+      return mroByOwnerDefId.get(ownerDefId) ?? EMPTY;
+    },
+    implementorsOf(interfaceDefId: DefId): readonly DefId[] {
+      return implsByInterfaceDefId.get(interfaceDefId) ?? EMPTY;
+    },
+  };
+}

gitnexus-shared/src/scope-resolution/module-scope-index.ts

@@ -0,0 +1,73 @@
+/**
+ * `ModuleScopeIndex` — O(1) `filePath → moduleScopeId` lookup.
+ *
+ * Every file parsed produces exactly one `Module` scope at its root. The
+ * finalize algorithm needs to resolve `ImportEdge.targetFile` to a concrete
+ * module scope id in constant time during the link pass; this index is that
+ * mapping.
+ *
+ * Part of RFC #909 Ring 2 SHARED — #913.
+ *
+ * Consumed by: #915 (SCC finalize link pass), #923 (shadow harness when
+ * resolving callsite file → enclosing module).
+ */
+
+import type { ScopeId } from './types.js';
+
+export interface ModuleScopeIndex {
+  readonly byFilePath: ReadonlyMap<string, ScopeId>;
+  readonly size: number;
+  get(filePath: string): ScopeId | undefined;
+  has(filePath: string): boolean;
+}
+
+export interface ModuleScopeEntry {
+  readonly filePath: string;
+  readonly moduleScopeId: ScopeId;
+}
+
+/**
+ * Build a `ModuleScopeIndex` from a flat list of `{ filePath, moduleScopeId }`
+ * pairs.
+ *
+ * **Collision policy: first-write-wins.** A file should appear exactly once
+ * in a single ingestion run; collisions indicate the same file was parsed
+ * twice or a `filePath` normalization bug upstream. Dropping the later
+ * entry preserves the first-stable id the rest of the pipeline may already
+ * have registered against.
+ *
+ * **Caller contract: filePath keys must be pre-normalized.** This index
+ * keys on the raw `filePath` string and does NOT canonicalize separators,
+ * case, or trailing slashes. Callers upstream of this function must agree
+ * on a canonical form (typically repo-root-relative, POSIX separators,
+ * no trailing slash) before constructing entries — otherwise `C:\foo\bar.ts`,
+ * `C:/foo/bar.ts`, and `foo/bar.ts` will all hash to distinct buckets and
+ * `get()` will miss.
+ *
+ * Pure function — safe to call repeatedly; no side effects.
+ */
+export function buildModuleScopeIndex(entries: readonly ModuleScopeEntry[]): ModuleScopeIndex {
+  const byFilePath = new Map<string, ScopeId>();
+  for (const { filePath, moduleScopeId } of entries) {
+    if (byFilePath.has(filePath)) continue; // first-write-wins
+    byFilePath.set(filePath, moduleScopeId);
+  }
+  return wrapIndex(byFilePath);
+}
+
+// ─── Internal ───────────────────────────────────────────────────────────────
+
+function wrapIndex(byFilePath: Map<string, ScopeId>): ModuleScopeIndex {
+  return {
+    byFilePath,
+    get size() {
+      return byFilePath.size;
+    },
+    get(filePath: string): ScopeId | undefined {
+      return byFilePath.get(filePath);
+    },
+    has(filePath: string): boolean {
+      return byFilePath.has(filePath);
+    },
+  };
+}

gitnexus-shared/src/scope-resolution/origin-priority.ts

@@ -0,0 +1,30 @@
+/**
+ * `ORIGIN_PRIORITY` — RFC Appendix B (authoritative values).
+ *
+ * Tie-break ordering applied inside `Registry.lookup` Step 7 when
+ * `|Δconfidence| < 0.001` between two `Resolution` candidates. Lower number
+ * = stronger (wins the tie).
+ *
+ * Full tie-break order (§4.2 Step 7):
+ *   confidence DESC → scope depth ASC → MRO depth ASC → ORIGIN_PRIORITY ASC
+ *   → DefId.localeCompare
+ */
+
+export type OriginForTieBreak =
+  | 'local'
+  | 'import'
+  | 'reexport'
+  | 'namespace'
+  | 'wildcard'
+  | 'global-qualified'
+  | 'global-name';
+
+export const ORIGIN_PRIORITY: Readonly<Record<OriginForTieBreak, number>> = {
+  local: 0,
+  import: 1,
+  reexport: 2,
+  namespace: 3,
+  wildcard: 4,
+  'global-qualified': 5,
+  'global-name': 6,
+};

gitnexus-shared/src/scope-resolution/parsed-file.ts

@@ -0,0 +1,65 @@
+/**
+ * `ParsedFile` — the per-file artifact produced by `ScopeExtractor`
+ * (RFC §3.2 Phase 1; Ring 2 PKG #919).
+ *
+ * The boundary between Phase 1 (extraction, per-file, parallelizable) and
+ * Phase 2 (finalize, cross-file). One `ParsedFile` is emitted per source
+ * file; the finalize orchestrator (#921) collects them into a workspace-
+ * wide set and feeds them to the shared `finalize` algorithm (#915).
+ *
+ * ## Shape
+ *
+ *   - `scopes`           — every `Scope` created for this file, in tree-
+ *                          topological order (module first, then children).
+ *                          `Scope.bindings` carry **local-only** bindings at
+ *                          this stage; finalize merges imports/wildcards on top.
+ *   - `parsedImports`    — raw `ParsedImport[]` for this file; finalize
+ *                          resolves each to a concrete `ImportEdge`.
+ *   - `localDefs`        — defs structurally declared in this file. A
+ *                          superset of every `Scope.ownedDefs` union.
+ *                          Listed separately so `finalize` can dedup-index
+ *                          without re-walking scopes.
+ *   - `referenceSites`   — pre-resolution usage facts; populated by the
+ *                          resolution phase into `ReferenceIndex`.
+ *
+ * ## What `ParsedFile` deliberately does NOT carry
+ *
+ *   - Linked `ImportEdge`s. Those are finalize output.
+ *   - A `ScopeTree` instance. Callers build one from `scopes` (cheap —
+ *     `buildScopeTree(parsedFile.scopes)`). Keeping the ParsedFile flat
+ *     makes IPC serialization from worker threads straightforward.
+ *   - Merged module-scope bindings. Finalize owns that materialization.
+ *
+ * ## Compatibility with `FinalizeFile`
+ *
+ * `FinalizeFile` (defined in `./finalize-algorithm.ts`) is a structural
+ * subset of `ParsedFile` — `filePath`, `moduleScope`, `parsedImports`,
+ * `localDefs`. A `ParsedFile` is trivially convertible to a `FinalizeFile`
+ * by picking those four fields, so the finalize orchestrator threads
+ * ParsedFile through to the shared algorithm without shape-shifting.
+ */
+
+import type { Scope, ScopeId } from './types.js';
+import type { ParsedImport } from './types.js';
+import type { SymbolDefinition } from './symbol-definition.js';
+import type { ReferenceSite } from './reference-site.js';
+
+export interface ParsedFile {
+  readonly filePath: string;
+  /** `Scope.id` of the file's root `Module` scope. */
+  readonly moduleScope: ScopeId;
+  /**
+   * All scopes in this file, typically emitted in tree-topological order.
+   * Caller reconstructs a `ScopeTree` via `buildScopeTree(scopes)` when
+   * navigation or invariant re-validation is needed.
+   */
+  readonly scopes: readonly Scope[];
+  readonly parsedImports: readonly ParsedImport[];
+  /**
+   * All defs structurally declared in this file (classes, methods, fields,
+   * variables). Mirrors the union of `Scope.ownedDefs` across `scopes`,
+   * pre-flattened for O(N) consumption by finalize.
+   */
+  readonly localDefs: readonly SymbolDefinition[];
+  readonly referenceSites: readonly ReferenceSite[];
+}

gitnexus-shared/src/scope-resolution/position-index.ts

@@ -0,0 +1,166 @@
+/**
+ * `PositionIndex` — O(log N_file) scope-at-position lookup
+ * (RFC §3.1; Ring 2 SHARED #912).
+ *
+ * Per-file sorted array of `(range, scopeId)` entries, sorted by start
+ * position ASC (`startLine`, then `startCol`). `atPosition(filePath, line,
+ * col)` binary-searches for the last entry whose start ≤ (line, col), then
+ * scans backward through the sorted prefix and returns the first entry
+ * whose range contains the query position.
+ *
+ * **Why this works.** `ScopeTree`'s invariants (parent strictly contains
+ * child; siblings don't overlap) guarantee that the scopes containing a
+ * given point form an **ancestor chain**. When scanning backward through
+ * entries sorted by start position ASC, the first scope we find that
+ * contains the query is the innermost one — any deeper-starting scope
+ * that also contained the query would appear *later* in the sorted array,
+ * but we're only scanning entries with start ≤ query, so anything later
+ * necessarily starts after the query and can't contain it.
+ *
+ * Expected complexity: `O(log N_file + D)` where `D` is the lexical depth
+ * at the query position (typically ≤ 10). Worst-case degrades to `O(N_file)`
+ * only under pathological inputs (many scopes starting at the same line).
+ *
+ * **Line/column conventions.** Matches `Range` in `types.ts`: lines are
+ * 1-based, columns are 0-based. Ranges are **inclusive on both ends** —
+ * a scope whose `endLine:endCol` equals the query position still contains
+ * it. That matches how tree-sitter captures bodies (closing brace
+ * included) and how closed PR #902's `enclosingFunctions` behaved.
+ */
+
+import type { Range, Scope, ScopeId } from './types.js';
+
+export interface PositionIndex {
+  /** Total scope entries indexed across all files. */
+  readonly size: number;
+  /**
+   * Innermost scope containing `(line, col)` in `filePath`, or `undefined`
+   * when nothing contains it (position before file start, after file end,
+   * or filePath not indexed).
+   *
+   * **Touching-boundary semantics.** Ranges are inclusive on both ends.
+   * When two sibling scopes share a boundary point — e.g.
+   * `[5:0, 10:0]` and `[10:0, 15:0]`, which is legal under `ScopeTree`'s
+   * non-overlap invariant — a query at the shared point `(10, 0)` is
+   * contained by **both**. The innermost-wins tie-break rule applies as
+   * usual: since neither is nested inside the other, the one that
+   * **starts latest** wins, i.e. the **right** sibling. The mechanism
+   * is the backward scan through the start-position-sorted array (see
+   * `findLastStartLteIndex` below) — both siblings land before the
+   * upper-bound cursor, and the right sibling is scanned first. Queries at non-boundary positions between them naturally
+   * fall to the unique containing scope.
+   */
+  atPosition(filePath: string, line: number, col: number): ScopeId | undefined;
+}
+
+/**
+ * Build a `PositionIndex` from a flat list of `Scope` records.
+ *
+ * Duplicate `id`s are tolerated and deduplicated — the caller's
+ * `ScopeTree.buildScopeTree` is the authoritative validator of scope
+ * identity, and the position index does not need to re-check that
+ * invariant.
+ */
+export function buildPositionIndex(scopes: readonly Scope[]): PositionIndex {
+  const entriesByFile = new Map<string, Entry[]>();
+  const seen = new Set<ScopeId>();
+
+  for (const scope of scopes) {
+    if (seen.has(scope.id)) continue;
+    seen.add(scope.id);
+
+    let bucket = entriesByFile.get(scope.filePath);
+    if (bucket === undefined) {
+      bucket = [];
+      entriesByFile.set(scope.filePath, bucket);
+    }
+    bucket.push({ id: scope.id, range: scope.range });
+  }
+
+  for (const bucket of entriesByFile.values()) {
+    bucket.sort(compareEntry);
+  }
+
+  return wrapIndex(entriesByFile, seen.size);
+}
+
+// ─── Internals ──────────────────────────────────────────────────────────────
+
+interface Entry {
+  readonly id: ScopeId;
+  readonly range: Range;
+}
+
+/**
+ * Sort by start position ASC, breaking ties by end position DESC so that
+ * larger (outer) scopes appear before their smaller (inner) co-starting
+ * siblings in the array. Makes the backward-scan contract crisp: the
+ * first containing hit from the end of the scanned prefix is the
+ * innermost scope.
+ */
+function compareEntry(a: Entry, b: Entry): number {
+  if (a.range.startLine !== b.range.startLine) return a.range.startLine - b.range.startLine;
+  if (a.range.startCol !== b.range.startCol) return a.range.startCol - b.range.startCol;
+  if (a.range.endLine !== b.range.endLine) return b.range.endLine - a.range.endLine;
+  return b.range.endCol - a.range.endCol;
+}
+
+/** Whether `(line, col)` is at or after `range`'s start. */
+function startIsAtOrBefore(range: Range, line: number, col: number): boolean {
+  if (range.startLine < line) return true;
+  if (range.startLine > line) return false;
+  return range.startCol <= col;
+}
+
+/** Whether `(line, col)` is at or before `range`'s end (inclusive). */
+function endIsAtOrAfter(range: Range, line: number, col: number): boolean {
+  if (range.endLine > line) return true;
+  if (range.endLine < line) return false;
+  return range.endCol >= col;
+}
+
+/**
+ * Return the largest index `i` in `arr` where `arr[i].range` starts at or
+ * before `(line, col)`. Returns `-1` if no entry starts ≤ the query.
+ *
+ * Classic "upper bound - 1" binary search: find the first entry that
+ * starts *after* the query, then step back one.
+ */
+function findLastStartLteIndex(arr: readonly Entry[], line: number, col: number): number {
+  let lo = 0;
+  let hi = arr.length;
+  while (lo < hi) {
+    const mid = (lo + hi) >>> 1;
+    if (startIsAtOrBefore(arr[mid]!.range, line, col)) {
+      lo = mid + 1;
+    } else {
+      hi = mid;
+    }
+  }
+  return lo - 1;
+}
+
+function wrapIndex(entriesByFile: Map<string, Entry[]>, size: number): PositionIndex {
+  return {
+    get size() {
+      return size;
+    },
+    atPosition(filePath: string, line: number, col: number): ScopeId | undefined {
+      const bucket = entriesByFile.get(filePath);
+      if (bucket === undefined || bucket.length === 0) return undefined;
+
+      const endIdx = findLastStartLteIndex(bucket, line, col);
+      if (endIdx < 0) return undefined;
+
+      // Scan backward; first containing hit is innermost (see file header).
+      for (let i = endIdx; i >= 0; i--) {
+        const entry = bucket[i]!;
+        if (endIsAtOrAfter(entry.range, line, col)) {
+          // `startIsAtOrBefore` is guaranteed true by the binary search.
+          return entry.id;
+        }
+      }
+      return undefined;
+    },
+  };
+}

gitnexus-shared/src/scope-resolution/qualified-name-index.ts

@@ -0,0 +1,92 @@
+/**
+ * `QualifiedNameIndex` — O(1) `qualifiedName → DefId[]` lookup across all kinds.
+ *
+ * Cross-kind fast path for qualified-name resolution
+ * (`lookupQualified(qname, scope, params)` in RFC §4.5). Class, method,
+ * field, and namespace defs all contribute to a single index here; consumers
+ * filter the returned `DefId[]` by `p.acceptedKinds` at the call site.
+ *
+ * Returns `DefId[]` (not a single `DefId`) because multiple defs can legally
+ * share a qualified name — partial classes in C#, method overloads, or
+ * accidental cross-kind collisions. The lookup caller filters to the expected
+ * kind(s) and ranks the survivors.
+ *
+ * Part of RFC #909 Ring 2 SHARED — #913.
+ *
+ * Consumed by: #917 (`Registry.lookup` qualified fast path, `resolveTypeRef`
+ * dotted fallback via #916).
+ */
+
+import type { SymbolDefinition } from './symbol-definition.js';
+import type { DefId } from './types.js';
+
+export interface QualifiedNameIndex {
+  readonly byQualifiedName: ReadonlyMap<string, readonly DefId[]>;
+  readonly size: number;
+  /** Returns all `DefId`s registered under this qualified name; empty frozen
+   *  array on miss so callers can iterate without null checks. */
+  get(qualifiedName: string): readonly DefId[];
+  has(qualifiedName: string): boolean;
+}
+
+/**
+ * Build a `QualifiedNameIndex` from a flat list of `SymbolDefinition` records.
+ *
+ * Only defs with a non-empty `qualifiedName` contribute; defs without one are
+ * silently skipped (not every kind carries a qualified name — anonymous or
+ * top-level symbols, dynamic-unresolved imports, etc.).
+ *
+ * **Duplicate policy: appended in input order.** Each unique `(qname, DefId)`
+ * pair contributes at most once — repeated entries for the same pair are
+ * deduplicated. Distinct `DefId`s sharing a `qname` accumulate in insertion
+ * order (stable output for deterministic lookup ranking at the call site).
+ *
+ * Pure function — safe to call repeatedly; no side effects.
+ */
+export function buildQualifiedNameIndex(defs: readonly SymbolDefinition[]): QualifiedNameIndex {
+  const byQualifiedName = new Map<string, DefId[]>();
+  const seenPairs = new Set<string>();
+
+  for (const def of defs) {
+    const qname = def.qualifiedName;
+    if (qname === undefined || qname.length === 0) continue;
+
+    const pairKey = `${qname}\0${def.nodeId}`;
+    if (seenPairs.has(pairKey)) continue;
+    seenPairs.add(pairKey);
+
+    const bucket = byQualifiedName.get(qname);
+    if (bucket === undefined) {
+      byQualifiedName.set(qname, [def.nodeId]);
+    } else {
+      bucket.push(def.nodeId);
+    }
+  }
+
+  // Freeze bucket arrays so consumers can't mutate the index.
+  const frozen = new Map<string, readonly DefId[]>();
+  for (const [k, v] of byQualifiedName) {
+    frozen.set(k, Object.freeze(v.slice()));
+  }
+
+  return wrapIndex(frozen);
+}
+
+// ─── Internal ───────────────────────────────────────────────────────────────
+
+const EMPTY: readonly DefId[] = Object.freeze([]);
+
+function wrapIndex(byQualifiedName: Map<string, readonly DefId[]>): QualifiedNameIndex {
+  return {
+    byQualifiedName,
+    get size() {
+      return byQualifiedName.size;
+    },
+    get(qualifiedName: string): readonly DefId[] {
+      return byQualifiedName.get(qualifiedName) ?? EMPTY;
+    },
+    has(qualifiedName: string): boolean {
+      return byQualifiedName.has(qualifiedName);
+    },
+  };
+}

gitnexus-shared/src/scope-resolution/reference-site.ts

@@ -0,0 +1,74 @@
+/**
+ * `ReferenceSite` — a pre-resolution usage fact collected by `ScopeExtractor`
+ * (RFC §3.2 Phase 1; Ring 2 PKG #919).
+ *
+ * One record per `@reference.*` capture. The extractor records:
+ *   - the name being referenced (method/field/class name),
+ *   - the source range,
+ *   - the innermost lexical scope containing the reference,
+ *   - the reference kind (call, read, write, inherits, etc.),
+ *   - optional call-form classification from `provider.classifyCallForm`,
+ *   - optional explicit-receiver hint for dotted calls (`user.save()`),
+ *   - optional arity for call sites.
+ *
+ * Reference sites are consumed by the resolution phase (RFC §3.2 Phase 4)
+ * which routes each through `Registry.lookup` / `resolveTypeRef` and
+ * emits the final `Reference` record into `ReferenceIndex`.
+ *
+ * **Pre-resolution only.** `ReferenceSite` intentionally carries no
+ * `toDef`, `confidence`, or `evidence`. Those are populated by the
+ * resolution step that reads this record and produces a `Reference`
+ * (defined in `./types.ts`).
+ */
+
+import type { Range, ScopeId } from './types.js';
+
+/**
+ * What kind of usage this reference represents — the graph-edge kind
+ * emitted after resolution (`CALLS`, `READS`, `WRITES`, etc.).
+ *
+ * Matches the `kind` field on `Reference` in `./types.ts` so the
+ * resolution phase can pass it through without re-classification.
+ */
+export type ReferenceKind =
+  | 'call'
+  | 'read'
+  | 'write'
+  | 'type-reference'
+  | 'inherits'
+  | 'import-use';
+
+/**
+ * How a call site binds its target. Informs `Registry.lookup` Step 2
+ * (type-binding path):
+ *   - `'free'`   — bare call (no receiver); resolution via lexical chain.
+ *   - `'member'` — dotted call (`x.foo()`); resolution via receiver type.
+ *   - `'constructor'` — `new Foo()`; receiver is the class itself.
+ *   - `'index'`  — index expression (`arr[0]`); rare as a dispatch site.
+ *
+ * Only meaningful for `kind === 'call'`; ignored for reads/writes.
+ */
+export type CallForm = 'free' | 'member' | 'constructor' | 'index';
+
+export interface ReferenceSite {
+  /** The name being referenced (e.g., `'save'`, `'User'`, `'count'`). */
+  readonly name: string;
+  /** Source-text range of this reference. */
+  readonly atRange: Range;
+  /**
+   * Innermost lexical scope that contains `atRange`. Resolved by the
+   * extractor via position lookup and frozen here so the resolution
+   * phase doesn't re-compute it per call.
+   */
+  readonly inScope: ScopeId;
+  readonly kind: ReferenceKind;
+  /** Set when `kind === 'call'`. */
+  readonly callForm?: CallForm;
+  /**
+   * Explicit receiver for dotted calls (`user.save()` → `{ name: 'user' }`).
+   * Passed through to `Registry.lookup.explicitReceiver`.
+   */
+  readonly explicitReceiver?: { readonly name: string };
+  /** Argument count at the call site; used by `provider.arityCompatibility`. */
+  readonly arity?: number;
+}

gitnexus-shared/src/scope-resolution/registries/class-registry.ts

@@ -0,0 +1,41 @@
+/**
+ * `ClassRegistry` — scope-aware lookup for class-like symbols
+ * (RFC §4.4; Ring 2 SHARED #917).
+ *
+ * Thin wrapper over `lookupCore`, specialized for class kinds:
+ *
+ *   - `acceptedKinds` = Class / Interface / Enum / Struct / Union /
+ *     Trait / TypeAlias / Typedef / Record / Delegate / Annotation /
+ *     Template / Namespace.
+ *   - `useReceiverTypeBinding` is **false** — classes are resolved by
+ *     name through the lexical chain + global qualified fallback, not
+ *     via a receiver type.
+ *   - Arity filter is not applicable (classes are not called with
+ *     argument counts at lookup time).
+ */
+
+import type { Resolution, ScopeId } from '../types.js';
+import { lookupCore, type CoreLookupParams } from './lookup-core.js';
+import { CLASS_KINDS, type RegistryContext } from './context.js';
+
+export interface ClassRegistry {
+  /**
+   * Look up a class-like symbol by simple or dotted name anchored at
+   * `scope`. Returns a confidence-ranked `Resolution[]`; consume `[0]`
+   * for the best answer.
+   */
+  lookup(name: string, scope: ScopeId): readonly Resolution[];
+}
+
+export function buildClassRegistry(ctx: RegistryContext): ClassRegistry {
+  const params: CoreLookupParams = {
+    acceptedKinds: CLASS_KINDS,
+    useReceiverTypeBinding: false,
+    ownerScopedContributor: null,
+  };
+  return {
+    lookup(name: string, scope: ScopeId) {
+      return lookupCore(name, scope, params, ctx);
+    },
+  };
+}

gitnexus-shared/src/scope-resolution/registries/context.ts

@@ -0,0 +1,110 @@
+/**
+ * `RegistryContext` — the injected state required by the scope-aware
+ * registry lookups (RFC §4; Ring 2 SHARED #917).
+ *
+ * Bundles every Ring 2 index + every provider hook the 7-step algorithm
+ * might consult. Threaded through `lookupCore` and the three public
+ * registries unchanged; construction is the caller's responsibility
+ * (typically once per workspace-indexing pass in Ring 2 PKG).
+ *
+ * The design intent is **pure-logic in `gitnexus-shared`, data + hooks
+ * supplied by the caller**. Nothing here loads files, parses AST, or
+ * reaches into the CLI package.
+ */
+
+import type { NodeLabel } from '../../graph/types.js';
+import type { SymbolDefinition } from '../symbol-definition.js';
+import type { Callsite, DefId } from '../types.js';
+import type { DefIndex } from '../def-index.js';
+import type { QualifiedNameIndex } from '../qualified-name-index.js';
+import type { ModuleScopeIndex } from '../module-scope-index.js';
+import type { ScopeTree } from '../scope-tree.js';
+import type { MethodDispatchIndex } from '../method-dispatch-index.js';
+
+// ─── Provider hooks consumed by the registries ─────────────────────────────
+
+export interface RegistryProviders {
+  /**
+   * Language-specific arity compatibility between a callsite and a candidate
+   * `def`. Mirrors `LanguageProvider.arityCompatibility` from #911. Optional:
+   * when absent, every candidate receives `'unknown'` (neutral signal).
+   */
+  arityCompatibility?(callsite: Callsite, def: SymbolDefinition): ArityVerdict;
+}
+
+export type ArityVerdict = 'compatible' | 'unknown' | 'incompatible';
+
+// ─── Owner-scoped contributor (concrete shape for `RegistryContributor`) ────
+
+/**
+ * Per-owner membership view plugged into `LookupParams.ownerScopedContributor`.
+ *
+ * When the caller knows a receiver is of type `Owner` (e.g., after
+ * resolving an explicit receiver or via `self`), it can supply the
+ * `Owner`'s own member bucket here. `lookupCore` treats hits from this
+ * contributor as `origin: 'local'` inside the owner's body scope —
+ * strongest-visibility evidence, unaffected by the scope-chain hop
+ * deduction that punishes outer-scope hits.
+ *
+ * Ring 1's `RegistryContributor = unknown` opaque placeholder is narrowed
+ * to this concrete shape here in Ring 2 SHARED (#917).
+ */
+export interface OwnerScopedContributor {
+  /** The owner (class/struct/trait/interface) that bounds this view. */
+  readonly ownerDefId: DefId;
+  /**
+   * Methods / fields directly declared on the owner, keyed by simple name.
+   * Return empty array on miss; implementations should NOT walk the MRO —
+   * that's `MethodDispatchIndex`'s job, handled in the type-binding step.
+   */
+  byName(name: string): readonly SymbolDefinition[];
+}
+
+// ─── Top-level context threaded through every lookup ───────────────────────
+
+export interface RegistryContext {
+  readonly scopes: ScopeTree;
+  readonly defs: DefIndex;
+  readonly qualifiedNames: QualifiedNameIndex;
+  readonly moduleScopes: ModuleScopeIndex;
+  /**
+   * Method-dispatch index; required for method/field registries that
+   * honor `useReceiverTypeBinding`. Omit for class-only lookups.
+   */
+  readonly methodDispatch?: MethodDispatchIndex;
+  readonly providers: RegistryProviders;
+}
+
+// ─── Per-kind default `acceptedKinds` sets ─────────────────────────────────
+//
+// Exported so the three public registries stay declarative (each one just
+// points at the right constant + passes it to `lookupCore`).
+
+export const CLASS_KINDS: readonly NodeLabel[] = Object.freeze([
+  'Class',
+  'Interface',
+  'Enum',
+  'Struct',
+  'Union',
+  'Trait',
+  'TypeAlias',
+  'Typedef',
+  'Record',
+  'Delegate',
+  'Annotation',
+  'Template',
+  'Namespace',
+]);
+
+export const METHOD_KINDS: readonly NodeLabel[] = Object.freeze([
+  'Method',
+  'Function',
+  'Constructor',
+]);
+
+export const FIELD_KINDS: readonly NodeLabel[] = Object.freeze([
+  'Variable',
+  'Property',
+  'Const',
+  'Static',
+]);

gitnexus-shared/src/scope-resolution/registries/evidence.ts

@@ -0,0 +1,196 @@
+/**
+ * `composeEvidence` — translate accumulated raw signals per candidate
+ * into a `ResolutionEvidence[]` using the authoritative `EvidenceWeights`
+ * map (RFC §4.3 + Appendix A; Ring 2 SHARED #917).
+ *
+ * Each `RawSignals` record describes what was observed about a candidate
+ * during the 7-step walk: where it was found, at what depth, whether
+ * anything corroborates it. This module turns those raw facts into the
+ * typed evidence list attached to the outgoing `Resolution`.
+ *
+ * **Every weight comes from `EvidenceWeights`.** No inline magic numbers.
+ * Extends issue #429 (centralize hardcoded confidence values).
+ *
+ * **Confidence compose rule.** Signals add; the sum is capped at 1.0 at
+ * the call site (inside `lookupCore`). This module only emits the list;
+ * it does NOT compute the capped sum so callers can inspect per-signal
+ * contributions for debugging.
+ */
+
+import type { BindingRef, ResolutionEvidence } from '../types.js';
+import { EvidenceWeights, typeBindingWeightAtDepth } from '../evidence-weights.js';
+
+/**
+ * Raw signals observed for a single candidate during the 7-step walk.
+ * Optional fields encode "this signal did not fire"; presence encodes
+ * "emit an evidence record".
+ */
+export interface RawSignals {
+  // ── Where-found ────────────────────────────────────────────────────────
+  /** Visibility origin of the binding that produced this candidate. */
+  readonly origin?: BindingRef['origin'] | 'global-qualified' | 'global-name';
+  /** Depth at which the binding was found (hops up from start scope). */
+  readonly scopeChainDepth?: number;
+  /** `ImportEdge` that brought the name in; present when origin is a non-local. */
+  readonly viaUnlinkedImport?: boolean;
+
+  // ── Type-binding path ──────────────────────────────────────────────────
+  /** Set when the candidate came via the receiver's type-binding MRO walk. */
+  readonly typeBindingMroDepth?: number;
+
+  // ── Corroborators ──────────────────────────────────────────────────────
+  /** `def.ownerId === resolvedReceiver.def.nodeId`. */
+  readonly ownerMatch?: boolean;
+  /** Always fires for candidates that pass `acceptedKinds`; weight 0. */
+  readonly kindMatch: true;
+
+  // ── Arity ──────────────────────────────────────────────────────────────
+  readonly arityVerdict?: 'compatible' | 'unknown' | 'incompatible';
+
+  // ── Dynamic-unresolved passthrough ─────────────────────────────────────
+  /** Candidate flows through a `kind: 'dynamic-unresolved'` ImportEdge. */
+  readonly dynamicUnresolved?: boolean;
+}
+
+/**
+ * Compose the raw signals into a stable `ResolutionEvidence[]` list.
+ *
+ * Emission order mirrors the `EvidenceWeights` layout: where-found →
+ * type-binding → corroborators → arity → degraded. Stable order makes
+ * the per-signal contributions easy to reason about in tests and in the
+ * shadow-mode parity dashboard.
+ */
+export function composeEvidence(signals: RawSignals): readonly ResolutionEvidence[] {
+  const out: ResolutionEvidence[] = [];
+
+  // ── Where-found visibility ─────────────────────────────────────────────
+  if (signals.origin !== undefined) {
+    const baseWeight = getOriginWeight(signals.origin);
+    const capped = signals.viaUnlinkedImport
+      ? baseWeight * EvidenceWeights.unlinkedImportMultiplier
+      : baseWeight;
+    const evidenceKind = whereFoundEvidenceKind(signals.origin);
+    out.push({
+      kind: evidenceKind,
+      weight: capped,
+      ...(signals.viaUnlinkedImport
+        ? { note: `via unresolved import (${EvidenceWeights.unlinkedImportMultiplier}× cap)` }
+        : {}),
+    });
+  }
+
+  // ── Scope-chain depth deduction (per-hop, only meaningful for lexical
+  // hits where scopeChainDepth ≥ 1). Depth 0 = no deduction; depth N ≥ 1
+  // emits a single `scope-chain` evidence with the accumulated penalty.
+  if (signals.scopeChainDepth !== undefined && signals.scopeChainDepth > 0) {
+    out.push({
+      kind: 'scope-chain',
+      weight: EvidenceWeights.scopeChainPerDepth * signals.scopeChainDepth,
+      note: `depth=${signals.scopeChainDepth}`,
+    });
+  }
+
+  // ── Type-binding / MRO path ────────────────────────────────────────────
+  if (signals.typeBindingMroDepth !== undefined) {
+    out.push({
+      kind: 'type-binding',
+      weight: typeBindingWeightAtDepth(signals.typeBindingMroDepth),
+      note: `mroDepth=${signals.typeBindingMroDepth}`,
+    });
+  }
+
+  // ── Owner match (explanatory for debug) ────────────────────────────────
+  if (signals.ownerMatch === true) {
+    out.push({
+      kind: 'owner-match',
+      weight: EvidenceWeights.ownerMatch,
+    });
+  }
+
+  // ── Kind match (always present; weight 0; retained for debuggability) ──
+  out.push({
+    kind: 'kind-match',
+    weight: EvidenceWeights.kindMatch,
+  });
+
+  // ── Arity ──────────────────────────────────────────────────────────────
+  if (signals.arityVerdict !== undefined) {
+    const weight =
+      signals.arityVerdict === 'compatible'
+        ? EvidenceWeights.arityMatchCompatible
+        : signals.arityVerdict === 'incompatible'
+          ? EvidenceWeights.arityMatchIncompatible
+          : EvidenceWeights.arityMatchUnknown;
+    out.push({
+      kind: 'arity-match',
+      weight,
+      note: signals.arityVerdict,
+    });
+  }
+
+  // ── Dynamic-unresolved (degraded signal) ───────────────────────────────
+  if (signals.dynamicUnresolved === true) {
+    out.push({
+      kind: 'dynamic-import-unresolved',
+      weight: EvidenceWeights.dynamicImportUnresolved,
+    });
+  }
+
+  return out;
+}
+
+/**
+ * Sum evidence weights and clamp to `[0, 1]`. Separate from `composeEvidence`
+ * so tests and the parity dashboard can inspect the raw evidence list.
+ */
+export function confidenceFromEvidence(evidence: readonly ResolutionEvidence[]): number {
+  let sum = 0;
+  for (const e of evidence) sum += e.weight;
+  if (sum < 0) return 0;
+  if (sum > 1) return 1;
+  return sum;
+}
+
+// ─── Internal ───────────────────────────────────────────────────────────────
+
+function getOriginWeight(origin: NonNullable<RawSignals['origin']>): number {
+  switch (origin) {
+    case 'local':
+      return EvidenceWeights.local;
+    case 'import':
+      return EvidenceWeights.import;
+    case 'reexport':
+      return EvidenceWeights.reexport;
+    case 'namespace':
+      return EvidenceWeights.namespace;
+    case 'wildcard':
+      return EvidenceWeights.wildcard;
+    case 'global-qualified':
+      return EvidenceWeights.globalQualified;
+    case 'global-name':
+      // Reserved for Ring 3 byName global index. `lookupCore` today only
+      // emits `'global-qualified'` (via `lookupQualified`, dotted-name
+      // fallback); no code path constructs `origin: 'global-name'` yet.
+      // Kept here so the Appendix A weight stays live and `composeEvidence`
+      // remains exhaustive over the origin union.
+      return EvidenceWeights.globalName;
+  }
+}
+
+function whereFoundEvidenceKind(
+  origin: NonNullable<RawSignals['origin']>,
+): ResolutionEvidence['kind'] {
+  switch (origin) {
+    case 'local':
+      return 'local';
+    case 'import':
+    case 'reexport':
+    case 'namespace':
+    case 'wildcard':
+      return 'import';
+    case 'global-qualified':
+      return 'global-qualified';
+    case 'global-name':
+      return 'global-name';
+  }
+}

gitnexus-shared/src/scope-resolution/registries/field-registry.ts

@@ -0,0 +1,43 @@
+/**
+ * `FieldRegistry` — scope-aware lookup for field / property / variable
+ * access (RFC §4.4; Ring 2 SHARED #917).
+ *
+ * Thin wrapper over `lookupCore`, specialized for data-member kinds:
+ *
+ *   - `acceptedKinds` = Variable / Property / Const / Static.
+ *   - `useReceiverTypeBinding` is **true** — fields are resolved against
+ *     the receiver type's MRO first, then via the lexical chain for
+ *     free variables.
+ *   - `callsite` is not meaningful for field access (no arity), but the
+ *     `explicitReceiver` and `ownerScopedContributor` knobs are.
+ */
+
+import type { Resolution, ScopeId } from '../types.js';
+import { lookupCore, type CoreLookupParams } from './lookup-core.js';
+import type { OwnerScopedContributor, RegistryContext } from './context.js';
+import { FIELD_KINDS } from './context.js';
+
+export interface FieldLookupOptions {
+  readonly explicitReceiver?: { readonly name: string };
+  readonly ownerScopedContributor?: OwnerScopedContributor;
+}
+
+export interface FieldRegistry {
+  lookup(name: string, scope: ScopeId, options?: FieldLookupOptions): readonly Resolution[];
+}
+
+export function buildFieldRegistry(ctx: RegistryContext): FieldRegistry {
+  return {
+    lookup(name: string, scope: ScopeId, options: FieldLookupOptions = {}) {
+      const params: CoreLookupParams = {
+        acceptedKinds: FIELD_KINDS,
+        useReceiverTypeBinding: true,
+        ownerScopedContributor: options.ownerScopedContributor ?? null,
+        ...(options.explicitReceiver !== undefined
+          ? { explicitReceiver: options.explicitReceiver }
+          : {}),
+      };
+      return lookupCore(name, scope, params, ctx);
+    },
+  };
+}

gitnexus-shared/src/scope-resolution/registries/lookup-core.ts

@@ -0,0 +1,461 @@
+/**
+ * `lookupCore` — the shared 7-step canonical resolution algorithm
+ * (RFC §4.2; Ring 2 SHARED #917).
+ *
+ * Pure function. Given a name, a starting scope, and per-kind parameters,
+ * walks lexical scopes + optional type-binding MRO + optional owner
+ * contributor + global qualified-name fallback, and returns a ranked
+ * `Resolution[]` with per-candidate evidence.
+ *
+ * All three public registries (`ClassRegistry` / `MethodRegistry` /
+ * `FieldRegistry`) dispatch into this function, differing only in the
+ * parameters they pass. The CHOICE of which steps fire is expressed
+ * through `LookupParams`, not through different algorithms per kind.
+ *
+ * ## Algorithm (RFC §4.2, verbatim names)
+ *
+ * **Step 1 — Lexical scope-chain walk.** From `startScope`, walk
+ *   parent-ward. At each scope, consult `scope.bindings.get(name)`:
+ *     - Filter candidates whose `def.type ∈ acceptedKinds`.
+ *     - For each surviving candidate, record a raw signal with the
+ *       binding's origin + the current scope-chain depth.
+ *     - **Hard shadow.** If `bindings.get(name)` is non-empty (including
+ *       non-kind-matching candidates), stop walking. The name is
+ *       lexically bound here; outer scopes are not consulted.
+ *
+ * **Step 2 — Type-binding resolution.** When `useReceiverTypeBinding`
+ *   is true, resolve the receiver's type at `startScope` (from
+ *   `scope.typeBindings`), then walk the MRO via
+ *   `MethodDispatchIndex.mroFor(ownerDefId)`. Membership per owner comes
+ *   through `RegistryContext.methodDispatch` + owner lookups into
+ *   `scope.ownedDefs`; each hit records a raw signal with the owner's
+ *   MRO depth.
+ *
+ * **Step 3 — Owner-scoped contributor.** When
+ *   `params.ownerScopedContributor` is present, merge its `byName(name)`
+ *   hits with `origin: 'local'` (they are declared directly on the
+ *   receiver). Distinct from Step 2 — Step 2 walks the MRO; Step 3 only
+ *   looks at the directly-declared owner members.
+ *
+ * **Step 4 — Kind filter (emit `kind-match` evidence).** Already
+ *   applied during Steps 1-3; this step just adds a `kind-match` signal
+ *   at weight 0 to every candidate for debuggability (so the evidence
+ *   array is self-describing).
+ *
+ * **Step 5 — Arity filter.** Call `providers.arityCompatibility(callsite,
+ *   def)` per surviving candidate. Verdicts: `compatible` / `unknown` /
+ *   `incompatible`. If at least one candidate is `compatible`, drop
+ *   `incompatible` ones. Otherwise keep all (the penalty weight alone
+ *   will rank them lower but they remain in the result).
+ *
+ * **Step 6 — Global fallback.** When Steps 1-3 produced **no**
+ *   candidates and the name contains a `.`, consult the
+ *   `QualifiedNameIndex` via `lookupQualified` — see §4.5. The `scope`
+ *   argument is NOT passed here because global lookup is scope-agnostic.
+ *
+ * **Step 7 — Rank + tie-break.** Compose evidence, compute confidence
+ *   (sum capped at 1.0), sort by the RFC Appendix B cascade.
+ *
+ * ## What this module does NOT do
+ *
+ *   - No AST reads (pure data in, pure data out).
+ *   - No `gitnexus/` imports.
+ *   - No language switches. Language-specific behavior flows exclusively
+ *     through `providers.*` and the `params` object.
+ *   - No caching. Callers that want memoization can wrap this function.
+ */
+
+import type { NodeLabel } from '../../graph/types.js';
+import type { SymbolDefinition } from '../symbol-definition.js';
+import type {
+  BindingRef,
+  Callsite,
+  DefId,
+  LookupParams,
+  Resolution,
+  Scope,
+  ScopeId,
+} from '../types.js';
+import type { OriginForTieBreak } from '../origin-priority.js';
+import { composeEvidence, confidenceFromEvidence, type RawSignals } from './evidence.js';
+import { compareByConfidenceWithTiebreaks, type TieBreakKey } from './tie-breaks.js';
+import { lookupQualified } from './lookup-qualified.js';
+import type { ArityVerdict, OwnerScopedContributor, RegistryContext } from './context.js';
+
+// ─── Public entry point ─────────────────────────────────────────────────────
+
+/** Extended `LookupParams` narrowing `ownerScopedContributor` to the concrete shape. */
+export interface CoreLookupParams extends Omit<LookupParams, 'ownerScopedContributor'> {
+  readonly ownerScopedContributor: OwnerScopedContributor | null;
+  /** Call-site description forwarded to `arityCompatibility`. Optional — for non-call lookups. */
+  readonly callsite?: Callsite;
+}
+
+/**
+ * Run the 7-step lookup. Returns a non-empty `Resolution[]` when any
+ * candidate was found; an empty array otherwise. Callers consume `[0]`
+ * for the best answer and optionally inspect the rest for alternates.
+ */
+export function lookupCore(
+  name: string,
+  startScope: ScopeId,
+  params: CoreLookupParams,
+  ctx: RegistryContext,
+): readonly Resolution[] {
+  const acceptedKinds = new Set<NodeLabel>(params.acceptedKinds);
+  const perCandidate = new Map<DefId, CandidateState>();
+
+  // ── Step 1: lexical scope-chain walk ──────────────────────────────────
+  const lexicalShadowed = walkLexicalChain(name, startScope, acceptedKinds, ctx, perCandidate);
+
+  // ── Step 2: type-binding / MRO walk (methods/fields) ──────────────────
+  if (params.useReceiverTypeBinding && ctx.methodDispatch !== undefined) {
+    walkReceiverTypeBinding(name, startScope, acceptedKinds, params, ctx, perCandidate);
+  }
+
+  // ── Step 3: owner-scoped contributor ──────────────────────────────────
+  if (params.ownerScopedContributor !== null) {
+    seedFromOwnerScopedContributor(
+      name,
+      params.ownerScopedContributor,
+      acceptedKinds,
+      perCandidate,
+    );
+  }
+
+  // ── Step 4: kind-match evidence (emitted by composeEvidence directly) ──
+  // Handled inside `composeEvidence`.
+
+  // ── Step 5: arity filter ──────────────────────────────────────────────
+  if (params.callsite !== undefined) {
+    applyArityFilter(params.callsite, perCandidate, ctx);
+  }
+
+  // ── Step 6: global fallback (only when Steps 1-3 produced nothing) ──
+  if (perCandidate.size === 0 && !lexicalShadowed && name.includes('.')) {
+    const globals = lookupQualified(name, { acceptedKinds: params.acceptedKinds }, ctx);
+    if (globals.length > 0) return globals;
+  }
+
+  if (perCandidate.size === 0) return EMPTY;
+
+  // ── Step 7: compose evidence + rank ──────────────────────────────────
+  return rankCandidates(perCandidate);
+}
+
+// ─── Internal state ────────────────────────────────────────────────────────
+
+interface CandidateState {
+  readonly def: SymbolDefinition;
+  readonly signals: MutableRawSignals;
+  readonly tieBreakKey: MutableTieBreakKey;
+}
+
+interface MutableRawSignals {
+  origin?: BindingRef['origin'] | 'global-qualified' | 'global-name';
+  scopeChainDepth?: number;
+  viaUnlinkedImport?: boolean;
+  typeBindingMroDepth?: number;
+  ownerMatch?: boolean;
+  kindMatch: true;
+  arityVerdict?: ArityVerdict;
+  dynamicUnresolved?: boolean;
+}
+
+interface MutableTieBreakKey {
+  scopeDepth: number;
+  mroDepth: number;
+  origin: OriginForTieBreak;
+}
+
+function ensureCandidate(
+  perCandidate: Map<DefId, CandidateState>,
+  def: SymbolDefinition,
+): CandidateState {
+  const existing = perCandidate.get(def.nodeId);
+  if (existing !== undefined) return existing;
+  const fresh: CandidateState = {
+    def,
+    signals: { kindMatch: true },
+    tieBreakKey: { scopeDepth: 0, mroDepth: 0, origin: 'local' },
+  };
+  perCandidate.set(def.nodeId, fresh);
+  return fresh;
+}
+
+// ─── Step 1 implementation ─────────────────────────────────────────────────
+
+/**
+ * Walk the lexical scope chain from `startScope` upward. Returns `true`
+ * iff a scope with any `bindings.get(name)` entries was found — the
+ * caller uses this to decide whether to run the global fallback.
+ */
+function walkLexicalChain(
+  name: string,
+  startScope: ScopeId,
+  acceptedKinds: ReadonlySet<NodeLabel>,
+  ctx: RegistryContext,
+  perCandidate: Map<DefId, CandidateState>,
+): boolean {
+  let currentId: ScopeId | null = startScope;
+  let depth = 0;
+  const visited = new Set<ScopeId>();
+
+  while (currentId !== null) {
+    if (visited.has(currentId)) return false;
+    visited.add(currentId);
+
+    const scope: Scope | undefined = ctx.scopes.getScope(currentId);
+    if (scope === undefined) return false;
+
+    const bindings = scope.bindings.get(name);
+    if (bindings !== undefined && bindings.length > 0) {
+      for (const binding of bindings) {
+        if (!acceptedKinds.has(binding.def.type)) continue;
+        recordLexicalHit(perCandidate, binding, depth);
+      }
+      return true; // hard shadow regardless of kind-filter survivorship
+    }
+
+    currentId = scope.parent;
+    depth++;
+  }
+
+  return false;
+}
+
+function recordLexicalHit(
+  perCandidate: Map<DefId, CandidateState>,
+  binding: BindingRef,
+  scopeChainDepth: number,
+): void {
+  const state = ensureCandidate(perCandidate, binding.def);
+  state.signals.origin = binding.origin;
+  state.signals.scopeChainDepth = scopeChainDepth;
+  if (binding.via?.linkStatus === 'unresolved') {
+    state.signals.viaUnlinkedImport = true;
+  }
+  if (binding.via?.kind === 'dynamic-unresolved') {
+    state.signals.dynamicUnresolved = true;
+  }
+  state.tieBreakKey.scopeDepth = scopeChainDepth;
+  state.tieBreakKey.origin = binding.origin as OriginForTieBreak;
+}
+
+// ─── Step 2 implementation ─────────────────────────────────────────────────
+
+function walkReceiverTypeBinding(
+  name: string,
+  startScope: ScopeId,
+  acceptedKinds: ReadonlySet<NodeLabel>,
+  params: CoreLookupParams,
+  ctx: RegistryContext,
+  perCandidate: Map<DefId, CandidateState>,
+): void {
+  const ownerDefId = resolveReceiverOwner(startScope, params, ctx);
+  if (ownerDefId === undefined) return;
+
+  if (ctx.methodDispatch === undefined) return;
+
+  const ownerDef = ctx.defs.get(ownerDefId);
+  if (ownerDef === undefined) return;
+
+  // Walk the owner itself at depth 0, then its MRO chain.
+  const walk: DefId[] = [ownerDefId, ...ctx.methodDispatch.mroFor(ownerDefId)];
+
+  for (let mroDepth = 0; mroDepth < walk.length; mroDepth++) {
+    const currentOwnerId = walk[mroDepth]!;
+    const members = collectOwnedMembers(currentOwnerId, name, ctx);
+    for (const def of members) {
+      if (!acceptedKinds.has(def.type)) continue;
+      recordTypeBindingHit(perCandidate, def, mroDepth, ownerDefId);
+    }
+  }
+}
+
+function resolveReceiverOwner(
+  startScope: ScopeId,
+  params: CoreLookupParams,
+  ctx: RegistryContext,
+): DefId | undefined {
+  // Explicit receiver: consult the callsite scope's typeBindings for the
+  // named receiver; the attached TypeRef identifies the owner. Without a
+  // ready resolveTypeRef call (that module is separate), we do a direct
+  // lookup and trust the caller to have populated the binding.
+  if (params.explicitReceiver !== undefined) {
+    return lookupReceiverType(startScope, params.explicitReceiver.name, ctx);
+  }
+
+  // Implicit `self` / `this` — the scope's typeBindings should carry it.
+  for (const implicitName of IMPLICIT_RECEIVERS) {
+    const owner = lookupReceiverType(startScope, implicitName, ctx);
+    if (owner !== undefined) return owner;
+  }
+  return undefined;
+}
+
+const IMPLICIT_RECEIVERS: readonly string[] = Object.freeze(['self', 'this']);
+
+function lookupReceiverType(
+  startScope: ScopeId,
+  receiverName: string,
+  ctx: RegistryContext,
+): DefId | undefined {
+  let currentId: ScopeId | null = startScope;
+  const visited = new Set<ScopeId>();
+  while (currentId !== null) {
+    if (visited.has(currentId)) return undefined;
+    visited.add(currentId);
+
+    const scope = ctx.scopes.getScope(currentId);
+    if (scope === undefined) return undefined;
+
+    const typeRef = scope.typeBindings.get(receiverName);
+    if (typeRef !== undefined) {
+      // rawName must resolve to a def via qualifiedNames; if it doesn't, we
+      // can't claim the receiver type. No fallback — that's what
+      // `resolveTypeRef` would do, but we keep this path lean and let
+      // callers pre-resolve if they want the richer semantics.
+      const candidateIds = ctx.qualifiedNames.get(typeRef.rawName);
+      if (candidateIds.length === 1) return candidateIds[0];
+      // Ambiguous (≥ 2) or missing (0) — caller must pre-resolve via
+      // `resolveTypeRef` (#916) if they want the richer semantics. We
+      // intentionally do NOT re-implement a simple-name fallback here.
+      return undefined;
+    }
+    currentId = scope.parent;
+  }
+  return undefined;
+}
+
+function collectOwnedMembers(
+  ownerDefId: DefId,
+  memberName: string,
+  ctx: RegistryContext,
+): readonly SymbolDefinition[] {
+  // An owner's members are defs whose `ownerId === ownerDefId` and whose
+  // simple name matches `memberName`. We iterate `defs.byId` — O(D) per
+  // call today. A future by-owner index would make this O(K); tracked as
+  // a follow-up optimization before Ring 3 flips go production.
+  const out: SymbolDefinition[] = [];
+  for (const def of ctx.defs.byId.values()) {
+    if (def.ownerId !== ownerDefId) continue;
+    if (simpleNameOf(def) !== memberName) continue;
+    out.push(def);
+  }
+  return out;
+}
+
+function simpleNameOf(def: SymbolDefinition): string | undefined {
+  if (def.qualifiedName === undefined || def.qualifiedName.length === 0) return undefined;
+  const dot = def.qualifiedName.lastIndexOf('.');
+  return dot === -1 ? def.qualifiedName : def.qualifiedName.slice(dot + 1);
+}
+
+function recordTypeBindingHit(
+  perCandidate: Map<DefId, CandidateState>,
+  def: SymbolDefinition,
+  mroDepth: number,
+  receiverOwner: DefId,
+): void {
+  const state = ensureCandidate(perCandidate, def);
+  const existingMroDepth = state.signals.typeBindingMroDepth;
+  const firstHit = existingMroDepth === undefined;
+  // Only replace if this hit is shallower (smaller MRO depth). The local
+  // const lets TS narrow to `number` in the `else` branch so no `!`
+  // assertion is needed.
+  if (firstHit || mroDepth < existingMroDepth) {
+    state.signals.typeBindingMroDepth = mroDepth;
+    state.tieBreakKey.mroDepth = mroDepth;
+  }
+  if (def.ownerId === receiverOwner) {
+    state.signals.ownerMatch = true;
+  }
+  // Pure type-binding candidates (no lexical hit) would otherwise keep the
+  // `ensureCandidate` default `tieBreakKey.origin === 'local'`, making the
+  // Appendix B cascade lump them with local-origin candidates. Demote them
+  // to `'import'` — the strongest non-local origin — only when no earlier
+  // phase set an origin for this candidate. Lexical hits from Step 1 set
+  // `signals.origin` before Step 2 runs, so the guard skips them; Step 3
+  // (`seedFromOwnerScopedContributor`) runs AFTER Step 2 and unconditionally
+  // overrides `tieBreakKey.origin` back to `'local'` for direct-owner
+  // members, so any same-def overlap still ends up ranked correctly.
+  if (firstHit && state.signals.origin === undefined) {
+    state.tieBreakKey.origin = 'import';
+  }
+}
+
+// ─── Step 3 implementation ─────────────────────────────────────────────────
+
+function seedFromOwnerScopedContributor(
+  name: string,
+  contributor: OwnerScopedContributor,
+  acceptedKinds: ReadonlySet<NodeLabel>,
+  perCandidate: Map<DefId, CandidateState>,
+): void {
+  for (const def of contributor.byName(name)) {
+    if (!acceptedKinds.has(def.type)) continue;
+    const state = ensureCandidate(perCandidate, def);
+    // Treat the contributor's direct membership as `origin: 'local'` —
+    // strongest visibility, no scope-chain penalty.
+    state.signals.origin = 'local';
+    state.signals.scopeChainDepth = 0;
+    state.signals.ownerMatch = def.ownerId === contributor.ownerDefId;
+    state.tieBreakKey.origin = 'local';
+  }
+}
+
+// ─── Step 5 implementation ─────────────────────────────────────────────────
+
+function applyArityFilter(
+  callsite: Callsite,
+  perCandidate: Map<DefId, CandidateState>,
+  ctx: RegistryContext,
+): void {
+  const arityFn = ctx.providers.arityCompatibility;
+  if (arityFn === undefined) {
+    // No provider → record 'unknown' for every candidate; keeps signal
+    // shape uniform for composeEvidence.
+    for (const state of perCandidate.values()) {
+      state.signals.arityVerdict = 'unknown';
+    }
+    return;
+  }
+
+  let anyCompatible = false;
+  for (const state of perCandidate.values()) {
+    const verdict = arityFn(callsite, state.def);
+    state.signals.arityVerdict = verdict;
+    if (verdict === 'compatible') anyCompatible = true;
+  }
+
+  if (!anyCompatible) return;
+
+  // Filter: when at least one compatible candidate exists, drop incompatibles.
+  for (const [defId, state] of perCandidate) {
+    if (state.signals.arityVerdict === 'incompatible') {
+      perCandidate.delete(defId);
+    }
+  }
+}
+
+// ─── Step 7 implementation ─────────────────────────────────────────────────
+
+function rankCandidates(perCandidate: Map<DefId, CandidateState>): readonly Resolution[] {
+  const resolutions: Resolution[] = [];
+  const tieKeys = new Map<string, TieBreakKey>();
+
+  for (const state of perCandidate.values()) {
+    const evidence = composeEvidence(state.signals as RawSignals);
+    const confidence = confidenceFromEvidence(evidence);
+    resolutions.push({ def: state.def, confidence, evidence });
+    tieKeys.set(state.def.nodeId, { ...state.tieBreakKey });
+  }
+
+  resolutions.sort((a, b) => compareByConfidenceWithTiebreaks(a, b, tieKeys));
+  return Object.freeze(resolutions);
+}
+
+// ─── Constants ──────────────────────────────────────────────────────────────
+
+const EMPTY: readonly Resolution[] = Object.freeze([]);

gitnexus-shared/src/scope-resolution/registries/lookup-qualified.ts

@@ -0,0 +1,71 @@
+/**
+ * `lookupQualified` — qualified-name fast path (RFC §4.5; Ring 2 SHARED #917).
+ *
+ * Consults `QualifiedNameIndex` directly, filters by `acceptedKinds`, and
+ * returns `Resolution[]` with `origin: 'global-qualified'` evidence. Used by:
+ *
+ *   - `resolveTypeRef` dotted fallback (#916)
+ *   - `Registry.lookup` Step 6 when no lexical candidate survived
+ *   - Explicit dotted identifiers in Cypher / MCP tools where the caller
+ *     knows the target's canonical qualified name
+ *
+ * **Strict + deterministic.** No receiver-type resolution, no scope walk.
+ * Every surviving candidate gets the same base confidence (from
+ * `EvidenceWeights.globalQualified`), then the tie-break cascade
+ * disambiguates.
+ */
+
+import type { NodeLabel } from '../../graph/types.js';
+import type { Resolution } from '../types.js';
+import { composeEvidence, confidenceFromEvidence } from './evidence.js';
+import { compareByConfidenceWithTiebreaks, type TieBreakKey } from './tie-breaks.js';
+import type { RegistryContext } from './context.js';
+
+export interface LookupQualifiedParams {
+  readonly acceptedKinds: readonly NodeLabel[];
+}
+
+/**
+ * Look up a canonical qualified name (e.g., `app.models.User`) across all
+ * defs, filtered by `acceptedKinds`. Returns an empty array when the name
+ * is not indexed or no candidate matches the kind filter.
+ *
+ * Callers consume `[0]` for the strict single-return answer; the remainder
+ * carries alternate candidates (partial classes, overloads, accidental
+ * cross-kind hits) ordered by the tie-break cascade.
+ */
+export function lookupQualified(
+  qualifiedName: string,
+  params: LookupQualifiedParams,
+  ctx: RegistryContext,
+): readonly Resolution[] {
+  const defIds = ctx.qualifiedNames.get(qualifiedName);
+  if (defIds.length === 0) return EMPTY;
+
+  const acceptedKinds = new Set<NodeLabel>(params.acceptedKinds);
+
+  const resolutions: Resolution[] = [];
+  const tieKeys = new Map<string, TieBreakKey>();
+
+  for (const defId of defIds) {
+    const def = ctx.defs.get(defId);
+    if (def === undefined) continue;
+    if (!acceptedKinds.has(def.type)) continue;
+
+    const evidence = composeEvidence({ origin: 'global-qualified', kindMatch: true });
+    const confidence = confidenceFromEvidence(evidence);
+    resolutions.push({ def, confidence, evidence });
+    tieKeys.set(def.nodeId, {
+      scopeDepth: 0,
+      mroDepth: 0,
+      origin: 'global-qualified',
+    });
+  }
+
+  if (resolutions.length === 0) return EMPTY;
+
+  resolutions.sort((a, b) => compareByConfidenceWithTiebreaks(a, b, tieKeys));
+  return Object.freeze(resolutions);
+}
+
+const EMPTY: readonly Resolution[] = Object.freeze([]);

gitnexus-shared/src/scope-resolution/registries/method-registry.ts

@@ -0,0 +1,54 @@
+/**
+ * `MethodRegistry` — scope-aware lookup for method / function / constructor
+ * dispatch (RFC §4.4; Ring 2 SHARED #917).
+ *
+ * Thin wrapper over `lookupCore`, specialized for callable kinds:
+ *
+ *   - `acceptedKinds` = Method / Function / Constructor.
+ *   - `useReceiverTypeBinding` is **true** — the type-binding + MRO walk
+ *     (Step 2) is the primary evidence path for receiver-dispatched calls.
+ *   - `callsite.arity` flows through to `provider.arityCompatibility`
+ *     when provided. When the provider is absent, arity evidence is
+ *     `unknown` (neutral signal).
+ */
+
+import type { Callsite, Resolution, ScopeId } from '../types.js';
+import { lookupCore, type CoreLookupParams } from './lookup-core.js';
+import type { OwnerScopedContributor, RegistryContext } from './context.js';
+import { METHOD_KINDS } from './context.js';
+
+/**
+ * Extra per-call parameters that vary across call sites but NOT across
+ * registries. Kept as a separate shape so `MethodRegistry.lookup` stays
+ * concise while still exposing the explicit-receiver + owner-contributor +
+ * arity knobs the RFC algorithm needs.
+ */
+export interface MethodLookupOptions {
+  /** Call-site arity for `provider.arityCompatibility`. */
+  readonly callsite?: Callsite;
+  /** Explicit receiver (e.g., `user` in `user.save()`). See §4.1. */
+  readonly explicitReceiver?: { readonly name: string };
+  /** Optional per-owner contributor (Step 3). */
+  readonly ownerScopedContributor?: OwnerScopedContributor;
+}
+
+export interface MethodRegistry {
+  lookup(name: string, scope: ScopeId, options?: MethodLookupOptions): readonly Resolution[];
+}
+
+export function buildMethodRegistry(ctx: RegistryContext): MethodRegistry {
+  return {
+    lookup(name: string, scope: ScopeId, options: MethodLookupOptions = {}) {
+      const params: CoreLookupParams = {
+        acceptedKinds: METHOD_KINDS,
+        useReceiverTypeBinding: true,
+        ownerScopedContributor: options.ownerScopedContributor ?? null,
+        ...(options.callsite !== undefined ? { callsite: options.callsite } : {}),
+        ...(options.explicitReceiver !== undefined
+          ? { explicitReceiver: options.explicitReceiver }
+          : {}),
+      };
+      return lookupCore(name, scope, params, ctx);
+    },
+  };
+}

gitnexus-shared/src/scope-resolution/registries/tie-breaks.ts

@@ -0,0 +1,76 @@
+/**
+ * `compareByConfidenceWithTiebreaks` — the RFC §4.2 Step 7 total order
+ * over `Resolution` candidates (Ring 2 SHARED #917).
+ *
+ * Primary key is confidence (DESC). Remaining ties within `CONFIDENCE_EPSILON`
+ * fall through a deterministic cascade so the same inputs always produce
+ * the same winner, independent of insertion order.
+ *
+ * Tie-break cascade (per RFC Appendix B):
+ *
+ *   1. confidence DESC                       (primary)
+ *   2. scope depth ASC                       (nearer lexical scope wins)
+ *   3. MRO depth ASC                         (nearer class in hierarchy wins)
+ *   4. `ORIGIN_PRIORITY` ASC                 (local > import > … > global-name)
+ *   5. DefId.localeCompare                   (final deterministic tiebreaker)
+ *
+ * The per-candidate inputs needed beyond `Resolution.confidence` —
+ * `scopeDepth`, `mroDepth`, `origin` — are supplied via a sidecar
+ * `TieBreakKey` so the comparator stays pure and `Resolution` itself
+ * doesn't need to carry book-keeping fields.
+ */
+
+import { ORIGIN_PRIORITY, type OriginForTieBreak } from '../origin-priority.js';
+import type { Resolution } from '../types.js';
+
+export const CONFIDENCE_EPSILON = 0.001;
+
+/** Side-information per candidate used for secondary tie-breaks. */
+export interface TieBreakKey {
+  readonly scopeDepth: number;
+  readonly mroDepth: number;
+  readonly origin: OriginForTieBreak;
+}
+
+/**
+ * Pure comparator suitable for `Array.prototype.sort`. Return value follows
+ * the JavaScript convention: negative → `a` wins, positive → `b` wins.
+ *
+ * **Important:** `keys` is keyed by `Resolution.def.nodeId`, not by array
+ * index — stable across reorderings. Missing keys fall back to neutral
+ * values (`scopeDepth: 0`, `mroDepth: 0`, `origin: 'local'`), which means
+ * the tie-break degrades gracefully to defId-lexicographic ordering when
+ * side-info is unavailable. That keeps the total order deterministic
+ * even on malformed inputs.
+ */
+export function compareByConfidenceWithTiebreaks(
+  a: Resolution,
+  b: Resolution,
+  keys: ReadonlyMap<string, TieBreakKey>,
+): number {
+  // Primary: confidence DESC, treating values within epsilon as equal.
+  const delta = b.confidence - a.confidence;
+  if (Math.abs(delta) >= CONFIDENCE_EPSILON) return delta < 0 ? -1 : 1;
+
+  const ka = keys.get(a.def.nodeId) ?? DEFAULT_KEY;
+  const kb = keys.get(b.def.nodeId) ?? DEFAULT_KEY;
+
+  // Secondary: scope depth ASC.
+  if (ka.scopeDepth !== kb.scopeDepth) return ka.scopeDepth - kb.scopeDepth;
+
+  // Tertiary: MRO depth ASC.
+  if (ka.mroDepth !== kb.mroDepth) return ka.mroDepth - kb.mroDepth;
+
+  // Quaternary: ORIGIN_PRIORITY ASC.
+  const po = ORIGIN_PRIORITY[ka.origin] - ORIGIN_PRIORITY[kb.origin];
+  if (po !== 0) return po;
+
+  // Final: DefId lexicographic, locale-aware for deterministic cross-platform output.
+  return a.def.nodeId.localeCompare(b.def.nodeId);
+}
+
+const DEFAULT_KEY: TieBreakKey = Object.freeze({
+  scopeDepth: 0,
+  mroDepth: 0,
+  origin: 'local',
+});

gitnexus-shared/src/scope-resolution/resolve-type-ref.ts

@@ -0,0 +1,148 @@
+/**
+ * `resolveTypeRef` — strict single-return resolver for `TypeRef`s
+ * (RFC §4.6; Ring 2 SHARED #916).
+ *
+ * Narrower contract than `Registry.lookup`: no name-only global fallback, no
+ * confidence ranking, no arity check. Used by `Registry.lookup` Step 2 (type-
+ * binding propagation) and by any caller that wants the single best type-
+ * target for an annotation without paying for the full evidence pipeline.
+ *
+ * **Algorithm (strict).** Walk the scope chain from `ref.declaredAtScope`:
+ *
+ *   1. At each scope, inspect `bindings.get(ref.rawName)`:
+ *      - If one of the bindings is a **type-kind** def with a **strict origin**
+ *        (`'local' | 'import' | 'namespace' | 'reexport'`), return it.
+ *      - If any binding for this name exists at this scope but none qualifies
+ *        (e.g., a local variable named `User` shadows an outer import of class
+ *        `User`), return `null`. The nearer binding shadows; we do NOT fall
+ *        through to the global qualified-name index.
+ *      - Otherwise continue to the parent scope.
+ *   2. If the raw name is a dotted path (e.g., `'models.User'`) and the scope
+ *      walk produced no match, consult `QualifiedNameIndex.byQualifiedName`.
+ *      Only accept **exactly one** type-kind hit — anything ambiguous returns
+ *      `null` rather than a guess.
+ *   3. Return `null`.
+ *
+ * **What `'strict' origins' means.** `'wildcard'` is intentionally excluded.
+ * A wildcard-expanded name (`from x import *`) is too loose to use as an
+ * anchor for type resolution — it gives no signal about whether the name was
+ * actually imported. `Registry.lookup` may accept wildcard bindings at its
+ * own discretion (with lower evidence weight); `resolveTypeRef` does not.
+ *
+ * **What 'type-kind' means.** The subset of `NodeLabel` that a type annotation
+ * may legitimately reference: class-like, interface-like, enum-like, and
+ * alias-like kinds. See `TYPE_KINDS` below.
+ *
+ * Pure function — safe to call repeatedly; no side effects.
+ */
+
+import type { NodeLabel } from '../graph/types.js';
+import type { SymbolDefinition } from './symbol-definition.js';
+import type { BindingRef, ScopeId, ScopeLookup, TypeRef } from './types.js';
+import type { DefIndex } from './def-index.js';
+import type { QualifiedNameIndex } from './qualified-name-index.js';
+
+// ─── Public contracts ───────────────────────────────────────────────────────
+
+/**
+ * All inputs `resolveTypeRef` needs from the semantic model. Bundled into a
+ * context object so the call site stays short and the interface is stable as
+ * additional indexes get threaded through in later rings.
+ */
+export interface ResolveTypeRefContext {
+  readonly scopes: ScopeLookup;
+  readonly defIndex: DefIndex;
+  readonly qualifiedNameIndex: QualifiedNameIndex;
+}
+
+// ─── Strict policy constants ────────────────────────────────────────────────
+
+/** `'wildcard'` is deliberately absent. See file header. */
+const STRICT_ORIGINS: ReadonlySet<BindingRef['origin']> = new Set<BindingRef['origin']>([
+  'local',
+  'import',
+  'namespace',
+  'reexport',
+]);
+
+/**
+ * `NodeLabel` values that may appear on the RHS of a type annotation.
+ *
+ * Includes the usual class-like and interface-like kinds plus the alias-like
+ * ones (`TypeAlias`, `Typedef`). `Namespace` is excluded — it is a scope
+ * container, not a value type. `Function` / `Method` / `Variable` are
+ * excluded by design: a `rawName` bound to them at a strict origin is a
+ * *shadowing* binding, which the algorithm short-circuits to `null`.
+ *
+ * `'Type'` (the generic `NodeLabel` value) is also excluded — verified
+ * against `gitnexus/src/core/ingestion/` at the time of writing, no
+ * production extractor emits `type: 'Type'` for annotation-relevant
+ * symbols. Should a future extractor start emitting it, add `'Type'`
+ * here and add a test asserting the new path.
+ */
+const TYPE_KINDS: ReadonlySet<NodeLabel> = new Set<NodeLabel>([
+  'Class',
+  'Interface',
+  'Enum',
+  'Struct',
+  'Union',
+  'Trait',
+  'TypeAlias',
+  'Typedef',
+  'Record',
+  'Delegate',
+  'Annotation',
+  'Template',
+]);
+
+// ─── Main entry point ──────────────────────────────────────────────────────
+
+export function resolveTypeRef(ref: TypeRef, ctx: ResolveTypeRefContext): SymbolDefinition | null {
+  // Phase 1: scope-chain walk anchored at the declaration site.
+  let currentId: ScopeId | null = ref.declaredAtScope;
+  const visited = new Set<ScopeId>();
+
+  while (currentId !== null) {
+    // Cycle guard — a well-formed scope tree never loops, but a bug in the
+    // construction path should fail fast here rather than hanging.
+    if (visited.has(currentId)) return null;
+    visited.add(currentId);
+
+    const scope = ctx.scopes.getScope(currentId);
+    if (scope === undefined) return null; // broken chain = unresolvable
+
+    const bindings = scope.bindings.get(ref.rawName);
+    if (bindings !== undefined && bindings.length > 0) {
+      // At least one binding exists at this scope → it is the shadowing site.
+      // Either one of them qualifies, or the name is shadowed by a non-type.
+      for (const binding of bindings) {
+        if (!STRICT_ORIGINS.has(binding.origin)) continue;
+        if (TYPE_KINDS.has(binding.def.type)) {
+          return binding.def;
+        }
+      }
+      // Shadowed by a non-type / non-strict-origin binding. Fail fast — no
+      // global fallback, no walk to the parent.
+      return null;
+    }
+
+    currentId = scope.parent;
+  }
+
+  // Phase 2: dotted fallback via `QualifiedNameIndex`. Only accept a unique
+  // type-kind hit; anything ambiguous returns null (strict: no guesses).
+  if (ref.rawName.includes('.')) {
+    const candidates = ctx.qualifiedNameIndex.get(ref.rawName);
+    let onlyTypeDef: SymbolDefinition | null = null;
+    for (const defId of candidates) {
+      const def = ctx.defIndex.get(defId);
+      if (def === undefined) continue;
+      if (!TYPE_KINDS.has(def.type)) continue;
+      if (onlyTypeDef !== null) return null; // ambiguous
+      onlyTypeDef = def;
+    }
+    if (onlyTypeDef !== null) return onlyTypeDef;
+  }
+
+  return null;
+}

gitnexus-shared/src/scope-resolution/scope-id.ts

@@ -0,0 +1,57 @@
+/**
+ * `ScopeId` canonical constructor + string intern pool
+ * (RFC §2.2; Ring 2 SHARED #912).
+ *
+ * `ScopeId` is a deterministic string derived from the scope's file path,
+ * byte range, and kind:
+ *
+ *   scope:{filePath}#{startLine}:{startCol}-{endLine}:{endCol}:{kind}
+ *
+ * Two scopes produced by reparsing the same file at the same positions are
+ * `===`-equal as strings. Beyond the canonical shape, `makeScopeId` also
+ * **interns** the string through a process-local pool, so repeated calls
+ * with structurally identical inputs return the same string reference —
+ * making `Map<ScopeId, ...>` lookups and cache keys identity-fast.
+ *
+ * The intern pool is unbounded. The number of distinct `ScopeId`s across a
+ * single indexing run is O(total scopes in workspace), which is bounded by
+ * source-text size and already in memory; interning adds no asymptotic
+ * pressure. `clearScopeIdInternPool` is exported for test isolation.
+ */
+
+import type { Range } from './types.js';
+import type { ScopeId, ScopeKind } from './types.js';
+
+/** Inputs required to construct a canonical `ScopeId`. */
+export interface ScopeIdInput {
+  readonly filePath: string;
+  readonly range: Range;
+  readonly kind: ScopeKind;
+}
+
+/**
+ * Build a canonical `ScopeId` from its structural parts and intern it.
+ *
+ * Pure + referentially transparent: given the same input shape, always
+ * returns the same string reference for the lifetime of the pool.
+ */
+export function makeScopeId(input: ScopeIdInput): ScopeId {
+  const raw = `scope:${input.filePath}#${input.range.startLine}:${input.range.startCol}-${input.range.endLine}:${input.range.endCol}:${input.kind}`;
+  const existing = INTERN_POOL.get(raw);
+  if (existing !== undefined) return existing;
+  INTERN_POOL.set(raw, raw);
+  return raw;
+}
+
+/**
+ * Drop the intern pool. Intended for test setup/teardown — production code
+ * should not need this, since the pool's memory usage is bounded by the
+ * number of live scopes and cleaning it mid-run would break identity
+ * equality for existing scope ids.
+ */
+export function clearScopeIdInternPool(): void {
+  INTERN_POOL.clear();
+}
+
+/** Internal: shared intern pool (process-local). */
+const INTERN_POOL = new Map<string, string>();

gitnexus-shared/src/scope-resolution/scope-tree.ts

@@ -0,0 +1,254 @@
+/**
+ * `ScopeTree` — the lexical-scope spine of the `SemanticModel`
+ * (RFC §2.2 + §3.1; Ring 2 SHARED #912).
+ *
+ * Generalizes the `enclosingFunctions` pattern from closed PR #902 to
+ * arbitrary `ScopeKind`s. Owns the (parent ↔ children) relationship
+ * derived from each `Scope.parent` pointer, and validates the structural
+ * invariants a well-formed scope tree must satisfy.
+ *
+ * Invariants enforced at build time (throw on violation):
+ *
+ *   - Every non-`Module` scope has a non-null parent.
+ *   - Every parent pointer references a scope that was also supplied to
+ *     `buildScopeTree`.
+ *   - Parent range **strictly contains** child range.
+ *   - Sibling ranges under the same parent do not overlap.
+ *   - Parent and child live in the same `filePath`. (Cross-file parent
+ *     pointers would be a category error — a `File` scope is not the
+ *     parent of another file's scopes; imports do that job.)
+ *
+ * Satisfies the `ScopeLookup` contract (defined in `./types.js`), so
+ * `resolveTypeRef` (#916) and the scope-aware registries (#917) can take a
+ * `ScopeTree` directly without adapters.
+ *
+ * Immutable surface: `byId` is a `ReadonlyMap`; children arrays are
+ * `Object.freeze`d; miss lookups return a shared frozen empty array.
+ */
+
+import type { Scope, ScopeId, ScopeLookup, Range } from './types.js';
+
+// ─── Public contract ────────────────────────────────────────────────────────
+
+export interface ScopeTree extends ScopeLookup {
+  readonly size: number;
+  readonly byId: ReadonlyMap<ScopeId, Scope>;
+
+  getScope(id: ScopeId): Scope | undefined;
+  getParent(id: ScopeId): Scope | undefined;
+  /** Child `ScopeId`s of `id`, in input order. Frozen empty array on miss. */
+  getChildren(id: ScopeId): readonly ScopeId[];
+  /**
+   * Ancestor chain from the immediate parent up to (and including) the
+   * root module scope. Excludes the starting scope itself. Frozen empty
+   * array on miss / for a root scope.
+   */
+  getAncestors(id: ScopeId): readonly ScopeId[];
+  has(id: ScopeId): boolean;
+}
+
+// ─── Build errors ───────────────────────────────────────────────────────────
+
+/**
+ * Thrown by `buildScopeTree` when the input violates a structural
+ * invariant. Carries the offending ids + the invariant name so failed
+ * extraction pipelines can report actionable diagnostics.
+ */
+export class ScopeTreeInvariantError extends Error {
+  constructor(
+    readonly invariant:
+      | 'non-module-requires-parent'
+      | 'parent-not-found'
+      | 'parent-must-contain-child'
+      | 'sibling-ranges-overlap'
+      | 'parent-must-share-filepath'
+      | 'duplicate-scope-id',
+    message: string,
+  ) {
+    super(message);
+    this.name = 'ScopeTreeInvariantError';
+  }
+}
+
+// ─── Builder ───────────────────────────────────────────────────────────────
+
+/**
+ * Build an immutable `ScopeTree` from a flat list of `Scope` records.
+ *
+ * Throws `ScopeTreeInvariantError` on the first invariant violation; a
+ * malformed tree is a bug in the extraction pipeline, not a data case for
+ * consumers to handle, so fail-fast is the correct posture.
+ */
+export function buildScopeTree(scopes: readonly Scope[]): ScopeTree {
+  const byId = new Map<ScopeId, Scope>();
+  const childrenById = new Map<ScopeId, ScopeId[]>();
+
+  // ── Pass 1: collect by id + duplicate check ───────────────────────────
+  for (const scope of scopes) {
+    if (byId.has(scope.id)) {
+      throw new ScopeTreeInvariantError(
+        'duplicate-scope-id',
+        `Two scopes share id '${scope.id}'. Scope ids must be unique per tree.`,
+      );
+    }
+    byId.set(scope.id, scope);
+  }
+
+  // ── Pass 2: validate parent pointers + build children buckets ─────────
+  for (const scope of scopes) {
+    if (scope.parent === null) {
+      if (scope.kind !== 'Module') {
+        throw new ScopeTreeInvariantError(
+          'non-module-requires-parent',
+          `Scope '${scope.id}' has kind '${scope.kind}' but no parent. Only 'Module' scopes may be root-level.`,
+        );
+      }
+      continue;
+    }
+
+    const parent = byId.get(scope.parent);
+    if (parent === undefined) {
+      throw new ScopeTreeInvariantError(
+        'parent-not-found',
+        `Scope '${scope.id}' references parent '${scope.parent}' which is not part of this tree.`,
+      );
+    }
+    if (parent.filePath !== scope.filePath) {
+      throw new ScopeTreeInvariantError(
+        'parent-must-share-filepath',
+        `Scope '${scope.id}' (${scope.filePath}) has parent '${parent.id}' in a different file (${parent.filePath}). Parent/child scopes must share filePath.`,
+      );
+    }
+    if (!rangeStrictlyContains(parent.range, scope.range)) {
+      throw new ScopeTreeInvariantError(
+        'parent-must-contain-child',
+        `Parent scope '${parent.id}' at ${formatRange(parent.range)} does not strictly contain child '${scope.id}' at ${formatRange(scope.range)}.`,
+      );
+    }
+
+    let bucket = childrenById.get(parent.id);
+    if (bucket === undefined) {
+      bucket = [];
+      childrenById.set(parent.id, bucket);
+    }
+    bucket.push(scope.id);
+  }
+
+  // ── Pass 3: sibling-overlap check ─────────────────────────────────────
+  for (const [parentId, childIds] of childrenById) {
+    if (childIds.length < 2) continue;
+    // Sort siblings by (startLine, startCol) for an O(n log n) pairwise
+    // scan instead of O(n²) all-pairs.
+    const children = childIds.map((id) => byId.get(id)!).slice();
+    children.sort((a, b) => comparePosition(a.range, b.range));
+    for (let i = 1; i < children.length; i++) {
+      const prev = children[i - 1]!;
+      const curr = children[i]!;
+      if (rangesOverlap(prev.range, curr.range)) {
+        throw new ScopeTreeInvariantError(
+          'sibling-ranges-overlap',
+          `Sibling scopes under parent '${parentId}' overlap: '${prev.id}' ${formatRange(prev.range)} and '${curr.id}' ${formatRange(curr.range)}.`,
+        );
+      }
+    }
+  }
+
+  // Freeze children arrays so the surface is truly read-only.
+  const frozenChildren = new Map<ScopeId, readonly ScopeId[]>();
+  for (const [parentId, childIds] of childrenById) {
+    frozenChildren.set(parentId, Object.freeze(childIds.slice()));
+  }
+
+  return freezeTree(byId, frozenChildren);
+}
+
+// ─── Internals ──────────────────────────────────────────────────────────────
+
+const EMPTY_CHILDREN: readonly ScopeId[] = Object.freeze([]);
+
+function freezeTree(
+  byId: Map<ScopeId, Scope>,
+  childrenById: Map<ScopeId, readonly ScopeId[]>,
+): ScopeTree {
+  return {
+    byId,
+    get size() {
+      return byId.size;
+    },
+    getScope(id: ScopeId): Scope | undefined {
+      return byId.get(id);
+    },
+    getParent(id: ScopeId): Scope | undefined {
+      const scope = byId.get(id);
+      if (scope === undefined || scope.parent === null) return undefined;
+      return byId.get(scope.parent);
+    },
+    getChildren(id: ScopeId): readonly ScopeId[] {
+      return childrenById.get(id) ?? EMPTY_CHILDREN;
+    },
+    getAncestors(id: ScopeId): readonly ScopeId[] {
+      const start = byId.get(id);
+      if (start === undefined || start.parent === null) return EMPTY_CHILDREN;
+      const out: ScopeId[] = [];
+      const visited = new Set<ScopeId>([id]);
+      let cursor: ScopeId | null = start.parent;
+      while (cursor !== null && !visited.has(cursor)) {
+        visited.add(cursor);
+        out.push(cursor);
+        const next = byId.get(cursor);
+        cursor = next === undefined ? null : next.parent;
+      }
+      return Object.freeze(out);
+    },
+    has(id: ScopeId): boolean {
+      return byId.has(id);
+    },
+  };
+}
+
+/**
+ * `outer` strictly contains `inner` when `outer`'s start is at or before
+ * `inner`'s start, `outer`'s end is at or after `inner`'s end, and they are
+ * not the exact same range. Equal ranges are rejected — a child cannot
+ * occupy the exact same span as its parent.
+ */
+function rangeStrictlyContains(outer: Range, inner: Range): boolean {
+  if (
+    outer.startLine === inner.startLine &&
+    outer.startCol === inner.startCol &&
+    outer.endLine === inner.endLine &&
+    outer.endCol === inner.endCol
+  ) {
+    return false;
+  }
+  const outerStartsAtOrBefore =
+    outer.startLine < inner.startLine ||
+    (outer.startLine === inner.startLine && outer.startCol <= inner.startCol);
+  const outerEndsAtOrAfter =
+    outer.endLine > inner.endLine ||
+    (outer.endLine === inner.endLine && outer.endCol >= inner.endCol);
+  return outerStartsAtOrBefore && outerEndsAtOrAfter;
+}
+
+/**
+ * Two ranges overlap when neither finishes before the other begins. Ranges
+ * that merely touch at a single boundary point (`a.end === b.start`) do
+ * NOT overlap — this matches tree-sitter's half-open-like range semantics
+ * and the typical "sibling blocks meet but don't overlap" pattern.
+ */
+function rangesOverlap(a: Range, b: Range): boolean {
+  const aEndsBeforeB =
+    a.endLine < b.startLine || (a.endLine === b.startLine && a.endCol <= b.startCol);
+  const bEndsBeforeA =
+    b.endLine < a.startLine || (b.endLine === a.startLine && b.endCol <= a.startCol);
+  return !(aEndsBeforeB || bEndsBeforeA);
+}
+
+function comparePosition(a: Range, b: Range): number {
+  if (a.startLine !== b.startLine) return a.startLine - b.startLine;
+  return a.startCol - b.startCol;
+}
+
+function formatRange(r: Range): string {
+  return `${r.startLine}:${r.startCol}-${r.endLine}:${r.endCol}`;
+}

gitnexus-shared/src/scope-resolution/shadow/aggregate.ts

@@ -0,0 +1,188 @@
+/**
+ * Shadow-mode aggregation — per-language parity %, per-evidence-kind
+ * breakdown of divergences. Consumed by the parity dashboard (RING2-PKG-5).
+ *
+ * Pure functions; no I/O. The harness persists per-run JSON; the dashboard
+ * reads `.gitnexus/shadow-parity/latest.json` and renders.
+ *
+ * Related types — `ShadowAgreement`, `ShadowCallsite`, `ShadowDiff` — are
+ * defined alongside `diffResolutions` in `./diff.ts` and re-exported
+ * through the top-level `gitnexus-shared` barrel. Consumers import all
+ * three from `gitnexus-shared`, not from this module.
+ *
+ * Part of RFC #909 Ring 2 SHARED — #918.
+ */
+
+import type { SupportedLanguages } from '../../languages.js';
+import type { ResolutionEvidence } from '../types.js';
+import type { ShadowAgreement, ShadowDiff } from './diff.js';
+
+// ─── Aggregated report shape ────────────────────────────────────────────────
+
+export interface LanguageParityRow {
+  readonly language: SupportedLanguages;
+  readonly totalCalls: number;
+  readonly bothAgree: number;
+  readonly onlyLegacy: number;
+  readonly onlyNew: number;
+  readonly bothDisagree: number;
+  readonly bothEmpty: number;
+  /**
+   * Fraction in [0, 1]. Numerator = `bothAgree`; denominator = "calls where
+   * at least one side resolved" = `totalCalls - bothEmpty`.
+   *
+   * When the denominator is 0 (all calls for this language were
+   * `both-empty`), returns 0. Callers rendering the dashboard should treat
+   * a 0 parity alongside `totalCalls === bothEmpty` as "no signal" rather
+   * than "total disagreement".
+   */
+  readonly parity: number;
+  /**
+   * Divergence signals broken down by `ResolutionEvidence.kind`. Sourced
+   * from `ShadowDiff.evidenceDelta` on non-agreeing rows only — `both-agree`
+   * and `both-empty` do not contribute.
+   */
+  readonly evidenceBreakdown: ReadonlyMap<ResolutionEvidence['kind'], number>;
+}
+
+export interface ShadowParityReport {
+  readonly generatedAt: string; // ISO 8601
+  readonly perLanguage: readonly LanguageParityRow[];
+  readonly overall: Omit<LanguageParityRow, 'language' | 'evidenceBreakdown'>;
+}
+
+// ─── Public API ─────────────────────────────────────────────────────────────
+
+/**
+ * Aggregate a stream of `ShadowDiff` records into a `ShadowParityReport`,
+ * bucketed by language. Pure function.
+ *
+ * - `perLanguage` rows are sorted alphabetically by `SupportedLanguages`
+ *   value for stable JSON output (the dashboard reads
+ *   `.gitnexus/shadow-parity/latest.json` and diffing snapshots is useful).
+ * - `overall` is the column-wise sum across languages.
+ * - `generatedAt` is injected via the `now` parameter so tests stay
+ *   deterministic; production callers let it default to `new Date()`.
+ */
+export function aggregateDiffs(
+  diffs: readonly { readonly language: SupportedLanguages; readonly diff: ShadowDiff }[],
+  now: Date = new Date(),
+): ShadowParityReport {
+  const perLanguageMap = new Map<SupportedLanguages, MutableCounts>();
+
+  for (const { language, diff } of diffs) {
+    let counts = perLanguageMap.get(language);
+    if (!counts) {
+      counts = makeEmptyCounts();
+      perLanguageMap.set(language, counts);
+    }
+    tallyDiff(counts, diff);
+  }
+
+  const perLanguage: LanguageParityRow[] = Array.from(perLanguageMap.entries())
+    .map(([language, counts]) => buildRow(language, counts))
+    .sort((a, b) => a.language.localeCompare(b.language));
+
+  const overall = buildOverallRow(perLanguage);
+
+  return {
+    generatedAt: now.toISOString(),
+    perLanguage,
+    overall,
+  };
+}
+
+// ─── Internal helpers ───────────────────────────────────────────────────────
+
+interface MutableCounts {
+  totalCalls: number;
+  bothAgree: number;
+  onlyLegacy: number;
+  onlyNew: number;
+  bothDisagree: number;
+  bothEmpty: number;
+  evidenceBreakdown: Map<ResolutionEvidence['kind'], number>;
+}
+
+function makeEmptyCounts(): MutableCounts {
+  return {
+    totalCalls: 0,
+    bothAgree: 0,
+    onlyLegacy: 0,
+    onlyNew: 0,
+    bothDisagree: 0,
+    bothEmpty: 0,
+    evidenceBreakdown: new Map(),
+  };
+}
+
+function tallyDiff(counts: MutableCounts, diff: ShadowDiff): void {
+  counts.totalCalls += 1;
+  incrementAgreement(counts, diff.agreement);
+  if (diff.agreement === 'both-agree' || diff.agreement === 'both-empty') return;
+  for (const ev of diff.evidenceDelta) {
+    counts.evidenceBreakdown.set(ev.kind, (counts.evidenceBreakdown.get(ev.kind) ?? 0) + 1);
+  }
+}
+
+function incrementAgreement(counts: MutableCounts, agreement: ShadowAgreement): void {
+  switch (agreement) {
+    case 'both-agree':
+      counts.bothAgree += 1;
+      return;
+    case 'only-legacy':
+      counts.onlyLegacy += 1;
+      return;
+    case 'only-new':
+      counts.onlyNew += 1;
+      return;
+    case 'both-disagree':
+      counts.bothDisagree += 1;
+      return;
+    case 'both-empty':
+      counts.bothEmpty += 1;
+      return;
+  }
+}
+
+function buildRow(language: SupportedLanguages, counts: MutableCounts): LanguageParityRow {
+  const resolved = counts.totalCalls - counts.bothEmpty;
+  const parity = resolved > 0 ? counts.bothAgree / resolved : 0;
+  return {
+    language,
+    totalCalls: counts.totalCalls,
+    bothAgree: counts.bothAgree,
+    onlyLegacy: counts.onlyLegacy,
+    onlyNew: counts.onlyNew,
+    bothDisagree: counts.bothDisagree,
+    bothEmpty: counts.bothEmpty,
+    parity,
+    // Freeze via `new Map` on a sorted-kind copy so downstream consumers
+    // can't mutate the aggregator's internal state.
+    evidenceBreakdown: new Map(
+      Array.from(counts.evidenceBreakdown.entries()).sort(([a], [b]) => a.localeCompare(b)),
+    ),
+  };
+}
+
+function buildOverallRow(
+  perLanguage: readonly LanguageParityRow[],
+): Omit<LanguageParityRow, 'language' | 'evidenceBreakdown'> {
+  let totalCalls = 0;
+  let bothAgree = 0;
+  let onlyLegacy = 0;
+  let onlyNew = 0;
+  let bothDisagree = 0;
+  let bothEmpty = 0;
+  for (const row of perLanguage) {
+    totalCalls += row.totalCalls;
+    bothAgree += row.bothAgree;
+    onlyLegacy += row.onlyLegacy;
+    onlyNew += row.onlyNew;
+    bothDisagree += row.bothDisagree;
+    bothEmpty += row.bothEmpty;
+  }
+  const resolved = totalCalls - bothEmpty;
+  const parity = resolved > 0 ? bothAgree / resolved : 0;
+  return { totalCalls, bothAgree, onlyLegacy, onlyNew, bothDisagree, bothEmpty, parity };
+}

gitnexus-shared/src/scope-resolution/shadow/diff.ts

@@ -0,0 +1,126 @@
+/**
+ * Shadow-mode diff logic — RFC §6.3.
+ *
+ * Pure comparison logic for shadow mode. Takes two `Resolution[]` (legacy
+ * DAG result + new scope-based registry result) and produces a structured
+ * diff record for the parity dashboard.
+ *
+ * Consumed by the Ring 2 PKG shadow harness (#923), which dual-runs each
+ * call through legacy + new paths, diffs results, and persists per-run JSON
+ * for the parity dashboard.
+ *
+ * Part of RFC #909 Ring 2 SHARED — #918.
+ */
+
+import type { Resolution, ResolutionEvidence } from '../types.js';
+
+// ─── Diff record shape ──────────────────────────────────────────────────────
+
+export type ShadowAgreement =
+  | 'both-agree' // top match identical (same DefId)
+  | 'only-legacy' // legacy resolved; new did not
+  | 'only-new' // new resolved; legacy did not
+  | 'both-disagree' // both resolved, but to different targets
+  | 'both-empty'; // both returned empty
+
+export interface ShadowDiff {
+  readonly callsite: ShadowCallsite;
+  readonly legacy: Resolution | null;
+  readonly newResult: Resolution | null;
+  readonly agreement: ShadowAgreement;
+  /**
+   * Symmetric difference of the two top resolutions' `evidence` arrays,
+   * keyed on `ResolutionEvidence.kind`.
+   *
+   * - For `'both-agree'` and `'both-empty'` agreements, always empty.
+   * - For `'both-disagree'`, contains evidence kinds present on exactly one
+   *   side (not in both).
+   * - For `'only-legacy'`, contains all of legacy's top evidence.
+   * - For `'only-new'`, contains all of new's top evidence.
+   */
+  readonly evidenceDelta: readonly ResolutionEvidence[];
+}
+
+export interface ShadowCallsite {
+  readonly filePath: string;
+  readonly line: number;
+  readonly col: number;
+  readonly calledName: string;
+}
+
+// ─── Public API ─────────────────────────────────────────────────────────────
+
+/**
+ * Compare two `Resolution[]` arrays (top matches at `[0]`) and produce a
+ * `ShadowDiff`. Pure function.
+ *
+ * Agreement rules:
+ * - both arrays empty → `'both-empty'`, `evidenceDelta: []`
+ * - legacy empty, new non-empty → `'only-new'`, `evidenceDelta` = new's top evidence
+ * - legacy non-empty, new empty → `'only-legacy'`, `evidenceDelta` = legacy's top evidence
+ * - both non-empty, same top `def.nodeId` → `'both-agree'`, `evidenceDelta: []`
+ * - both non-empty, different top `def.nodeId` → `'both-disagree'`,
+ *   `evidenceDelta` = symmetric difference by `ResolutionEvidence.kind`
+ *   (first occurrence of a kind-only-on-legacy then kind-only-on-new; order
+ *   preserved from input arrays)
+ *
+ * Evidence-delta rationale: callers aggregating divergences want to know
+ * which signal kinds explain a disagreement. Keying on `kind` (not full
+ * equality over `weight`/`note`) avoids spurious deltas when the same
+ * signal fires with slightly different calibration weights on each side.
+ */
+export function diffResolutions(
+  callsite: ShadowCallsite,
+  legacy: readonly Resolution[],
+  newResult: readonly Resolution[],
+): ShadowDiff {
+  const legacyTop: Resolution | null = legacy.length > 0 ? legacy[0] : null;
+  const newTop: Resolution | null = newResult.length > 0 ? newResult[0] : null;
+
+  const agreement: ShadowAgreement = (() => {
+    if (legacyTop === null && newTop === null) return 'both-empty';
+    if (legacyTop === null) return 'only-new';
+    if (newTop === null) return 'only-legacy';
+    return legacyTop.def.nodeId === newTop.def.nodeId ? 'both-agree' : 'both-disagree';
+  })();
+
+  const evidenceDelta = computeEvidenceDelta(legacyTop, newTop, agreement);
+
+  return {
+    callsite,
+    legacy: legacyTop,
+    newResult: newTop,
+    agreement,
+    evidenceDelta,
+  };
+}
+
+// ─── Internal helpers ───────────────────────────────────────────────────────
+
+/**
+ * Symmetric difference of two evidence arrays, keyed on
+ * `ResolutionEvidence.kind`. Preserves input order: legacy-only signals
+ * first (in legacy's original order), then new-only signals (in new's order).
+ *
+ * For `'both-agree'` / `'both-empty'` the delta is empty by contract. For
+ * `'only-legacy'` / `'only-new'` one side's evidence is the delta (nothing to
+ * subtract against).
+ */
+function computeEvidenceDelta(
+  legacy: Resolution | null,
+  newResult: Resolution | null,
+  agreement: ShadowAgreement,
+): readonly ResolutionEvidence[] {
+  if (agreement === 'both-agree' || agreement === 'both-empty') return [];
+  if (agreement === 'only-legacy') return legacy!.evidence;
+  if (agreement === 'only-new') return newResult!.evidence;
+
+  // both-disagree: symmetric difference keyed on `kind`
+  const legacyKinds = new Set(legacy!.evidence.map((e) => e.kind));
+  const newKinds = new Set(newResult!.evidence.map((e) => e.kind));
+
+  const onlyInLegacy = legacy!.evidence.filter((e) => !newKinds.has(e.kind));
+  const onlyInNew = newResult!.evidence.filter((e) => !legacyKinds.has(e.kind));
+
+  return [...onlyInLegacy, ...onlyInNew];
+}

gitnexus-shared/src/scope-resolution/symbol-definition.ts

@@ -0,0 +1,35 @@
+/**
+ * `SymbolDefinition` — the canonical shape of an indexed symbol record.
+ *
+ * Historically defined in `gitnexus/src/core/ingestion/model/symbol-table.ts`;
+ * moved into `gitnexus-shared` as part of RFC #909 Ring 1 (#910) so the
+ * scope-resolution types that reference it can live in the shared package
+ * alongside their consumers (`gitnexus/` and `gitnexus-web/`).
+ *
+ * Shape is unchanged from the prior local definition.
+ */
+
+import type { NodeLabel } from '../graph/types.js';
+
+export interface SymbolDefinition {
+  nodeId: string;
+  filePath: string;
+  type: NodeLabel;
+  /** Canonical dot-separated qualified type name for class-like symbols
+   *  (e.g. `App.Models.User`). Falls back to the simple symbol name when no
+   *  package/namespace/module scope exists or no explicit qualified metadata is provided. */
+  qualifiedName?: string;
+  parameterCount?: number;
+  /** Number of required (non-optional, non-default) parameters.
+   *  Enables range-based arity filtering: argCount >= requiredParameterCount && argCount <= parameterCount. */
+  requiredParameterCount?: number;
+  /** Per-parameter type names for overload disambiguation (e.g. ['int', 'String']).
+   *  Populated when parameter types are resolvable from AST (any typed language). */
+  parameterTypes?: string[];
+  /** Raw return type text extracted from AST (e.g. 'User', 'Promise<User>') */
+  returnType?: string;
+  /** Declared type for non-callable symbols — fields/properties (e.g. 'Address', 'List<User>') */
+  declaredType?: string;
+  /** Links Method/Constructor/Property to owning Class/Struct/Trait nodeId */
+  ownerId?: string;
+}

gitnexus-shared/src/scope-resolution/types.ts

@@ -0,0 +1,432 @@
+/**
+ * Scope-resolution type definitions — RFC §2 data model (authoritative source).
+ *
+ * See: https://www.notion.so/346dc50b6ed281cfaacbe480bf231d50
+ *
+ * Anti-drift rule: every type, interface, and enum defined here is the single
+ * source of truth. Later code that references these names must import them
+ * from `gitnexus-shared`; it must not re-define them locally.
+ *
+ * Lifecycle contract (RFC §2.8): scopes are **constructed during extraction,
+ * linked during finalize, immutable after finalize**. All fields are
+ * `readonly` at the type level; `Object.freeze` is applied at runtime in dev
+ * builds. `ReferenceIndex` is the sole structure populated after freeze — by
+ * resolution, before emission.
+ */
+
+import type { NodeLabel } from '../graph/types.js';
+import type { SymbolDefinition } from './symbol-definition.js';
+
+// ─── §2.1 Type aliases ──────────────────────────────────────────────────────
+
+/** Stable per-(file, range, kind) scope identifier; interned for identity-fast equality. */
+export type ScopeId = string;
+
+/** Stable symbol-definition identifier (graph nodeId). */
+export type DefId = string;
+
+/** Kinds of lexical scope a `Scope` node can represent. */
+export type ScopeKind =
+  | 'Module' // file root
+  | 'Namespace' // C++ namespace, C# namespace, Kotlin package-object, Rust mod
+  | 'Class' // class/struct/trait/interface body
+  | 'Function' // function/method/closure/lambda body
+  | 'Block' // { ... }, if-body, for-body, with-body, match arms
+  | 'Expression'; // comprehensions, for-init, pattern bindings, lambda param lists
+
+// ─── Range + Capture (parser-agnostic) ──────────────────────────────────────
+
+/** Source-text range. 1-based `startLine`/`endLine`; 0-based `startCol`/`endCol`. */
+export interface Range {
+  readonly startLine: number;
+  readonly startCol: number;
+  readonly endLine: number;
+  readonly endCol: number;
+}
+
+/**
+ * Tagged capture emitted by a LanguageProvider's `emitScopeCaptures` hook.
+ *
+ * Parser-agnostic: tree-sitter queries and COBOL's regex tagger both produce
+ * `Capture[]`. The central `ScopeExtractor` consumes captures without
+ * knowing which parser produced them.
+ */
+export interface Capture {
+  /** Capture name, including leading `@` (e.g., `'@scope.module'`, `'@declaration.class'`). */
+  readonly name: string;
+  readonly range: Range;
+  /** The captured source text. */
+  readonly text: string;
+}
+
+/**
+ * A grouping of `Capture`s that came from a single query match (e.g., one
+ * `@import.statement` match carries `@import.source`, `@import.name`,
+ * `@import.alias?` as child captures). Keyed by capture name for O(1)
+ * child access.
+ */
+export type CaptureMatch = Readonly<Record<string, Capture>>;
+
+// ─── Hook input/output types (RFC §5.2) ─────────────────────────────────────
+
+/**
+ * Provider-interpreted raw import, consumed by finalize (Phase 2) to produce
+ * linked `ImportEdge[]`. The provider's `interpretImport` hook turns a
+ * `CaptureMatch` for an `@import.statement` into one of these; the central
+ * finalize algorithm resolves `targetRaw` to a concrete file via
+ * `resolveImportTarget` and materializes the final `ImportEdge`.
+ *
+ * Discriminated union — each variant carries only the fields that make sense
+ * for its kind. Invalid shapes (e.g., a `namespace` import with an alias-like
+ * `importedName` mismatch) are compile errors, not latent bugs. `'wildcard-
+ * expanded'` is deliberately NOT a variant: that kind is finalize output only,
+ * produced when `expandsWildcardTo` materializes a wildcard against target
+ * exports — a provider must never emit it at parse time.
+ */
+export type ParsedImport =
+  /**
+   * Per-name import without rename.
+   *
+   * Examples:
+   *   - Python `from foo import X`   → `{ kind: 'named', localName: 'X', importedName: 'X', targetRaw: 'foo' }`
+   *   - TS `import { X } from './foo'` → `{ kind: 'named', localName: 'X', importedName: 'X', targetRaw: './foo' }`
+   *   - Java `import foo.bar.X`       → `{ kind: 'named', localName: 'X', importedName: 'X', targetRaw: 'foo.bar' }`
+   */
+  | {
+      readonly kind: 'named';
+      readonly localName: string;
+      readonly importedName: string;
+      readonly targetRaw: string;
+    }
+  /**
+   * Per-name import with rename.
+   *
+   * Examples:
+   *   - Python `from foo import X as Y`   → `{ kind: 'alias', localName: 'Y', importedName: 'X', alias: 'Y', targetRaw: 'foo' }`
+   *   - TS `import { X as Y } from './foo'` → `{ kind: 'alias', localName: 'Y', importedName: 'X', alias: 'Y', targetRaw: './foo' }`
+   */
+  | {
+      readonly kind: 'alias';
+      readonly localName: string;
+      readonly importedName: string;
+      readonly alias: string;
+      readonly targetRaw: string;
+    }
+  /**
+   * Qualified module handle, with or without rename. `importedName` is the
+   * module being aliased; `localName` is the scope-visible handle (often the
+   * same unless renamed).
+   *
+   * Examples:
+   *   - Python `import numpy`            → `{ kind: 'namespace', localName: 'numpy', importedName: 'numpy', targetRaw: 'numpy' }`
+   *   - Python `import numpy as np`      → `{ kind: 'namespace', localName: 'np',    importedName: 'numpy', targetRaw: 'numpy' }`
+   *   - TS `import * as np from 'numpy'` → `{ kind: 'namespace', localName: 'np',    importedName: 'numpy', targetRaw: 'numpy' }`
+   *   - Go `import foo "pkg/bar"`        → `{ kind: 'namespace', localName: 'foo',   importedName: 'bar',   targetRaw: 'pkg/bar' }`
+   */
+  | {
+      readonly kind: 'namespace';
+      /** Scope-visible handle (e.g. `np` in `import numpy as np`; `numpy` when unaliased). */
+      readonly localName: string;
+      /** Module being aliased (e.g. `numpy` in `import numpy as np`). */
+      readonly importedName: string;
+      readonly targetRaw: string;
+    }
+  /**
+   * Syntactically-detectable parse-time re-export. Finalize may still produce
+   * `ImportEdge { kind: 'reexport', transitiveVia }` when flattening chains;
+   * this variant preserves the *parse-time* signal so finalize doesn't have
+   * to re-derive it from scratch.
+   *
+   * Examples:
+   *   - TS `export { X } from './y'`       → `{ kind: 'reexport', localName: 'X', importedName: 'X', targetRaw: './y' }`
+   *   - TS `export { X as Y } from './y'`  → `{ kind: 'reexport', localName: 'Y', importedName: 'X', alias: 'Y', targetRaw: './y' }`
+   *   - Rust `pub use foo::bar`            → `{ kind: 'reexport', localName: 'bar', importedName: 'bar', targetRaw: 'foo' }`
+   */
+  | {
+      readonly kind: 'reexport';
+      /** Name as re-exported in the current module. */
+      readonly localName: string;
+      /** Name in the source module. */
+      readonly importedName: string;
+      readonly targetRaw: string;
+      /** Set when the re-export renames the symbol (e.g. `export { X as Y } from './y'`). */
+      readonly alias?: string;
+    }
+  /**
+   * Wildcard import — brings every exported name from the target module into
+   * the importing scope. The finalize algorithm expands this into one
+   * `BindingRef` per exported name via the provider's `expandsWildcardTo`
+   * hook, producing the finalize-only `ImportEdge` kind `'wildcard-expanded'`.
+   *
+   * Examples:
+   *   - Python `from foo import *`   → `{ kind: 'wildcard', targetRaw: 'foo' }`
+   *   - JS `export * from './foo'`   → `{ kind: 'wildcard', targetRaw: './foo' }`
+   *   - Rust `pub use foo::*`         → `{ kind: 'wildcard', targetRaw: 'foo' }`
+   */
+  | {
+      readonly kind: 'wildcard';
+      readonly targetRaw: string;
+    }
+  /**
+   * Runtime-computed target — the import path is not a static literal at
+   * parse time. Providers SHOULD emit the unresolvable expression's source
+   * text as `targetRaw` to aid diagnostics; `null` only when no string form
+   * exists.
+   *
+   * Examples:
+   *   - JS `await import(expr)`                          → `{ kind: 'dynamic-unresolved', localName: '', targetRaw: 'expr' }`
+   *   - Python `importlib.import_module(f'pkg.{name}')`  → `{ kind: 'dynamic-unresolved', localName: '', targetRaw: "f'pkg.{name}'" }`
+   */
+  | {
+      readonly kind: 'dynamic-unresolved';
+      readonly localName: string;
+      /** Source text of the unresolved expression when available; `null` otherwise. */
+      readonly targetRaw: string | null;
+    };
+
+/**
+ * Provider-interpreted type binding. The provider's `interpretTypeBinding`
+ * hook turns a `CaptureMatch` (e.g., `@type-binding.parameter`) into one of
+ * these; the central extractor attaches the resulting `TypeRef` to the
+ * appropriate scope's `typeBindings` map.
+ */
+export interface ParsedTypeBinding {
+  /** The name being bound (parameter name, `self`, assignment LHS, …). */
+  readonly boundName: string;
+  /** The raw type name as written in source (`'User'`, `'models.User'`, …). */
+  readonly rawTypeName: string;
+  readonly source: TypeRef['source'];
+}
+
+/**
+ * Cross-file workspace index consumed by finalize-phase hooks
+ * (`resolveImportTarget`, `expandsWildcardTo`). Opaque placeholder in Ring 1;
+ * concretely typed in Ring 2 SHARED (#915).
+ */
+export type WorkspaceIndex = unknown;
+
+// `ScopeTree` is exported from `./scope-tree.js` as of Ring 2 SHARED (#912).
+// The former opaque placeholder lived here during Ring 1; removed now that
+// the concrete type exists. Consumers import from `gitnexus-shared` directly.
+
+/**
+ * Minimal scope-lookup contract: map a `ScopeId` back to its `Scope` record.
+ *
+ * Lives in the data-model layer so both `ScopeTree` (§3.1) and
+ * `resolveTypeRef` / `Registry.lookup` (§4) can depend on it without
+ * inverting each other. `ScopeTree` is the canonical implementation;
+ * tests and future alternative containers may supply their own.
+ */
+export interface ScopeLookup {
+  getScope(id: ScopeId): Scope | undefined;
+}
+
+/** Call-site description passed to `arityCompatibility`. */
+export interface Callsite {
+  /** Number of arguments at the call site. */
+  readonly arity: number;
+}
+
+// ─── §2.4 ImportEdge ────────────────────────────────────────────────────────
+
+/**
+ * A cross-file import edge attached to a module/namespace scope.
+ *
+ * Raw (unlinked) edges are emitted during parse (Phase 1); `targetModuleScope`
+ * and `targetDefId` are filled in during finalize (Phase 2) via SCC-aware
+ * bounded-fixpoint linking (RFC §3.2).
+ */
+export interface ImportEdge {
+  /** How this scope sees the imported name (after alias). */
+  readonly localName: string;
+  /** Exporting file; `null` only when `kind === 'dynamic-unresolved'`. */
+  readonly targetFile: string | null;
+  /** The name under which the target exports this symbol. */
+  readonly targetExportedName: string;
+  /** Pre-resolved at finalize: the module scope of the exporting file. */
+  readonly targetModuleScope?: ScopeId;
+  /** Pre-resolved at finalize: the exported symbol's `DefId`. */
+  readonly targetDefId?: DefId;
+  readonly kind:
+    | 'named'
+    | 'alias'
+    | 'namespace'
+    | 'wildcard-expanded'
+    | 'reexport'
+    | 'dynamic-unresolved';
+  /** Re-export chain, for provenance (e.g., `['./y']` when re-exported via `./y`). */
+  readonly transitiveVia?: readonly string[];
+  /** Set to `'unresolved'` when the SCC fixpoint could not link this edge. */
+  readonly linkStatus?: 'unresolved';
+}
+
+// ─── §2.3 BindingRef ────────────────────────────────────────────────────────
+
+/**
+ * A name binding visible at a scope, with provenance.
+ *
+ * Provenance stays at the visibility layer — a name being visible because it
+ * is local vs imported vs wildcard-expanded vs re-exported is a property of
+ * the binding itself. This keeps evidence emission and `import-use` reference
+ * stamping first-class instead of reconstructing provenance from a side table.
+ */
+export interface BindingRef {
+  readonly def: SymbolDefinition;
+  readonly origin: 'local' | 'import' | 'namespace' | 'wildcard' | 'reexport';
+  /** Non-null for non-local origins; carries the `ImportEdge` that brought the name into this scope. */
+  readonly via?: ImportEdge;
+}
+
+// ─── §2.5 TypeRef ───────────────────────────────────────────────────────────
+
+/**
+ * A reference to a named type, anchored at its declaration site.
+ *
+ * Design choice: raw name + declaration-site scope, resolved at lookup time.
+ * Pre-resolution would invert the extraction/resolution wall. Deferred thunks
+ * add no capability. Structured type systems are months of work per language.
+ * This shape keeps V1 tractable while preserving correctness for aliases,
+ * re-exports, and nested modules. Generics deferred to V2 via `typeArgs`.
+ */
+export interface TypeRef {
+  /** The name as written in source (e.g., `'User'`, `'models.User'`, `'List'`). */
+  readonly rawName: string;
+  /** Anchor for resolving `rawName` — the scope where the annotation/inference was written. */
+  readonly declaredAtScope: ScopeId;
+  readonly source:
+    | 'annotation'
+    | 'parameter-annotation'
+    | 'return-annotation'
+    | 'self'
+    | 'assignment-inferred'
+    | 'constructor-inferred'
+    | 'receiver-propagated';
+  /** Reserved for V2+: generic type arguments (`List<User>` → `[TypeRef('User')]`). V1 ignores. */
+  readonly typeArgs?: readonly TypeRef[];
+}
+
+// ─── §2.2 Scope ─────────────────────────────────────────────────────────────
+
+/**
+ * The canonical lexical-scope node. Forms the spine of the SemanticModel.
+ *
+ * ScopeId shape (RFC §2.2): `scope:{filePath}#{startLine}:{startCol}-{endLine}:{endCol}:{kind}`
+ * — deterministic, stable across reparses of the same source, interned.
+ */
+export interface Scope {
+  readonly id: ScopeId;
+  readonly parent: ScopeId | null;
+  readonly kind: ScopeKind;
+  readonly range: Range;
+  readonly filePath: string;
+
+  /** Names visible from this scope. Provenance preserved via `BindingRef.origin`. */
+  readonly bindings: ReadonlyMap<string, readonly BindingRef[]>;
+
+  /** Defs structurally owned by this scope (e.g., methods owned by a class body scope). */
+  readonly ownedDefs: readonly SymbolDefinition[];
+
+  /** Import edges attached to this scope. Mostly module/namespace scopes, but some
+   *  languages allow local imports (Python `def f(): from x import Y`, Rust
+   *  fn-local `use`, TS dynamic `import()`). */
+  readonly imports: readonly ImportEdge[];
+
+  /** Local type facts visible from this scope (parameter annotations, `self` binding, etc.). */
+  readonly typeBindings: ReadonlyMap<string, TypeRef>;
+}
+
+// ─── §2.6 Resolution + ResolutionEvidence ───────────────────────────────────
+
+/**
+ * One piece of evidence for a `Resolution`. Multiple signals corroborate a
+ * single match; their weights compose additively to produce `confidence`.
+ *
+ * Weights come from `EvidenceWeights` (see `./evidence-weights.ts`).
+ */
+export interface ResolutionEvidence {
+  readonly kind:
+    | 'local'
+    | 'scope-chain'
+    | 'import'
+    | 'type-binding'
+    | 'owner-match'
+    | 'kind-match'
+    | 'arity-match'
+    | 'global-name'
+    | 'global-qualified'
+    | 'dynamic-import-unresolved';
+  /** Signal weight, sourced from `EvidenceWeights`. Additive; sum capped at 1.0. */
+  readonly weight: number;
+  /** Optional debug annotation (e.g., `'matched via self: User'`). */
+  readonly note?: string;
+}
+
+/**
+ * A ranked resolution candidate returned by `ClassRegistry.lookup` /
+ * `MethodRegistry.lookup` / `FieldRegistry.lookup`. Evidence composes
+ * additively; callers read `[0]` for the one-shot answer or inspect the
+ * evidence trace for debugging.
+ */
+export interface Resolution {
+  readonly def: SymbolDefinition;
+  /** Σ of `evidence[].weight`, capped at 1.0. */
+  readonly confidence: number;
+  readonly evidence: readonly ResolutionEvidence[];
+  /** Optional debug trace: scopes walked to reach `def`. */
+  readonly path?: readonly ScopeId[];
+}
+
+// ─── §2.7 Reference + ReferenceIndex ────────────────────────────────────────
+
+/**
+ * A post-resolution usage fact: some code at `atRange` inside `fromScope`
+ * references `toDef` with the given confidence/evidence. Materialized by the
+ * resolution phase; emitted as graph edges (`CALLS`/`READS`/`WRITES`/etc.)
+ * during the emit phase.
+ */
+export interface Reference {
+  /** Innermost lexical scope containing `atRange`. */
+  readonly fromScope: ScopeId;
+  readonly toDef: DefId;
+  /** Location of the reference in source. */
+  readonly atRange: Range;
+  readonly kind: 'call' | 'read' | 'write' | 'type-reference' | 'inherits' | 'import-use';
+  readonly confidence: number;
+  readonly evidence: readonly ResolutionEvidence[];
+}
+
+/**
+ * Two-way index over `Reference` records, populated during the resolution
+ * phase. Scopes stay immutable after finalize; references accumulate here.
+ */
+export interface ReferenceIndex {
+  readonly bySourceScope: ReadonlyMap<ScopeId, readonly Reference[]>;
+  readonly byTargetDef: ReadonlyMap<DefId, readonly Reference[]>;
+}
+
+// ─── §4.1 LookupParams ──────────────────────────────────────────────────────
+
+/**
+ * Opaque placeholder for the per-kind registry passed as the owner-scoped
+ * contributor. Typed concretely in Ring 2 SHARED (#917); kept as `unknown`
+ * here so Ring 1 can ship without pulling in the registry implementation.
+ */
+export type RegistryContributor = unknown;
+
+/**
+ * Parameters accepted by `Registry.lookup`. Three registries (Class/Method/
+ * Field) run the same 7-step algorithm with different parameter tuples; see
+ * RFC §4.4 for per-registry specializations.
+ */
+export interface LookupParams {
+  readonly acceptedKinds: readonly NodeLabel[];
+  /** Class lookups: false. Method/Field lookups: true. */
+  readonly useReceiverTypeBinding: boolean;
+  readonly ownerScopedContributor: RegistryContributor | null;
+  /** Optional arity hint fed to `provider.arityCompatibility`. */
+  readonly arityHint?: number;
+  /** Explicit receiver name (e.g., `'user'` in `user.save()`). When present,
+   *  the receiver's type binding at the callsite scope is used; otherwise
+   *  the enclosing method's implicit `self`/`this` is consulted. See §4.1. */
+  readonly explicitReceiver?: { readonly name: string };
+}

gitnexus-web/e2e/multi-repo-scoping.spec.ts

@@ -61,13 +61,22 @@ test.beforeAll(async () => {
   }
 });
 
+// Auto-connect downloads the full graph from the backend; under parallel
+// workers in CI the same backend serves multiple downloads concurrently, so
+// reaching the "Ready" state can take noticeably longer than a single-worker
+// run. Match the 45s budget used by waitForGraphLoaded() in
+// server-connect.spec.ts which has been stable on the same backend.
+const READY_TIMEOUT_MS = 45_000;
+
 test.describe('Multi-Repo Scoping', () => {
   test('auto-connect via ?server= sets ?project= in URL', async ({ page }) => {
     // Navigate with ?server= param (the bookmarkable shortcut)
     await page.goto(`/?server=${encodeURIComponent(BACKEND_URL)}`);
 
     // Wait for graph to load
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
 
     // URL should now contain ?project= with the repo name
     const url = new URL(page.url());
@@ -77,8 +86,14 @@ test.describe('Multi-Repo Scoping', () => {
   });
 
   test('?server= is preserved in URL for F5 recovery', async ({ page }) => {
+    // Two sequential auto-connects (initial + reload), each up to READY_TIMEOUT_MS,
+    // can exceed the default 60s test timeout under parallel workers.
+    test.slow();
+
     await page.goto(`/?server=${encodeURIComponent(BACKEND_URL)}`);
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
 
     // URL should still have ?server=
     const url = new URL(page.url());
@@ -86,12 +101,16 @@ test.describe('Multi-Repo Scoping', () => {
 
     // F5 should reconnect (not show onboarding)
     await page.reload();
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
   });
 
   test('node count in status bar matches backend data', async ({ page }) => {
     await page.goto(`/?server=${encodeURIComponent(BACKEND_URL)}`);
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
 
     // Fetch expected node count from backend
     const res = await fetch(`${BACKEND_URL}/api/repo?repo=${encodeURIComponent(firstRepoName)}`);

gitnexus-web/e2e/onboarding.spec.ts

@@ -26,7 +26,10 @@ async function enterExploringView(page: import('@playwright/test').Page) {
     // Landing screen may not appear (e.g. ?server auto-connect)
   }
 
-  await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+  // Match the 45s budget used by waitForGraphLoaded() in
+  // server-connect.spec.ts; under parallel CI workers, downloading the full
+  // graph can occasionally exceed 30s.
+  await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 45_000 });
 }
 
 // ── Flow 1: Onboarding (no server running) ─────────────────────────────────
@@ -244,6 +247,10 @@ test.describe('Flow 3: Analyze form', () => {
 test.describe('Flow 4: Repo dropdown in exploring view', () => {
   const SKIP_MSG = 'Requires running gitnexus server with indexed repos';
 
+  // enterExploringView() can take up to ~45s under parallel CI workers; combined
+  // with the dropdown interactions this can exceed the default 60s test budget.
+  test.slow();
+
   test.beforeAll(async () => {
     if (process.env.E2E) return;
     try {

gitnexus-web/e2e/repo-switching.spec.ts

@@ -84,11 +84,20 @@ test.describe('Hold-queue timeout error', () => {
 
 // ── 2. ?project= URL persistence ─────────────────────────────────────────────
 
+// Auto-connect downloads the full graph from the backend; under parallel
+// workers in CI the same backend serves multiple downloads concurrently, so
+// reaching the "Ready" state can take noticeably longer than a single-worker
+// run. Match the 45s budget used by waitForGraphLoaded() in
+// server-connect.spec.ts which has been stable on the same backend.
+const READY_TIMEOUT_MS = 45_000;
+
 test.describe('?project= URL persistence', () => {
   test('?project= is set in URL after connecting via ?server=', async ({ page }) => {
     await page.goto(`/?server=${encodeURIComponent(BACKEND_URL)}`);
 
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
 
     const url = new URL(page.url());
     const project = url.searchParams.get('project');
@@ -98,12 +107,20 @@ test.describe('?project= URL persistence', () => {
   });
 
   test('?project= is still present after F5 reload', async ({ page }) => {
+    // Two sequential auto-connects (initial + reload), each up to READY_TIMEOUT_MS,
+    // can exceed the default 60s test timeout under parallel workers.
+    test.slow();
+
     await page.goto(`/?server=${encodeURIComponent(BACKEND_URL)}`);
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
 
     // After connect, URL has ?server=&project= — F5 re-uses both params
     await page.reload();
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
 
     const url = new URL(page.url());
     expect(url.searchParams.get('project')).toBeTruthy();
@@ -122,7 +139,9 @@ test.describe('?project= auto-connect', () => {
       `/?server=${encodeURIComponent(BACKEND_URL)}&project=${encodeURIComponent(firstRepoName)}`,
     );
 
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
 
     // ?project= in URL should match what we passed in
     const url = new URL(page.url());
@@ -155,7 +174,9 @@ test.describe('Windows path normalization', () => {
 
     await page.goto(`/?server=${encodeURIComponent(BACKEND_URL)}`);
 
-    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({ timeout: 30_000 });
+    await expect(page.locator('[data-testid="status-ready"]')).toBeVisible({
+      timeout: READY_TIMEOUT_MS,
+    });
 
     // URL ?project= must be the short basename, NOT the full Windows path
     const url = new URL(page.url());

gitnexus-web/package-lock.json

@@ -29,7 +29,7 @@
         "langchain": "^1.2.10",
         "lru-cache": "^11.2.4",
         "lucide-react": "^0.562.0",
-        "mermaid": "^11.12.2",
+        "mermaid": "^11.14.0",
         "mnemonist": "^0.39.0",
         "pandemonium": "^2.4.0",
         "react": "^18.3.1",
@@ -39,12 +39,12 @@
         "react-zoom-pan-pinch": "^3.7.0",
         "remark-gfm": "^4.0.1",
         "sigma": "^3.0.2",
-        "tailwindcss": "^4.1.18",
+        "tailwindcss": "^4.2.2",
         "uuid": "^13.0.0",
         "zod": "^3.25.76"
       },
       "devDependencies": {
-        "@babel/types": "^7.28.5",
+        "@babel/types": "^7.29.0",
         "@playwright/test": "^1.58.2",
         "@testing-library/jest-dom": "^6.9.1",
         "@testing-library/react": "^16.3.2",
@@ -57,12 +57,12 @@
         "@vercel/node": "^5.5.16",
         "@vitejs/plugin-react": "^5.1.0",
         "@vitest/coverage-v8": "^3.2.4",
-        "jsdom": "^29.0.0",
+        "jsdom": "^29.0.2",
         "tree-sitter-wasms": "^0.1.13",
         "typescript": "^5.4.5",
         "vite": "^5.2.0",
         "vitest": "^3.2.4",
-        "wait-on": "^8.0.5"
+        "wait-on": "^9.0.5"
       },
       "engines": {
         "node": ">=20.0.0"
@@ -129,39 +129,49 @@
       }
     },
     "node_modules/@asamuzakjp/css-color": {
-      "version": "5.0.1",
-      "resolved": "https://registry.npmjs.org/@asamuzakjp/css-color/-/css-color-5.0.1.tgz",
-      "integrity": "sha512-2SZFvqMyvboVV1d15lMf7XiI3m7SDqXUuKaTymJYLN6dSGadqp+fVojqJlVoMlbZnlTmu3S0TLwLTJpvBMO1Aw==",
+      "version": "5.1.11",
+      "resolved": "https://registry.npmjs.org/@asamuzakjp/css-color/-/css-color-5.1.11.tgz",
+      "integrity": "sha512-KVw6qIiCTUQhByfTd78h2yD1/00waTmm9uy/R7Ck/ctUyAPj+AEDLkQIdJW0T8+qGgj3j5bpNKK7Q3G+LedJWg==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "@csstools/css-calc": "^3.1.1",
-        "@csstools/css-color-parser": "^4.0.2",
+        "@asamuzakjp/generational-cache": "^1.0.1",
+        "@csstools/css-calc": "^3.2.0",
+        "@csstools/css-color-parser": "^4.1.0",
         "@csstools/css-parser-algorithms": "^4.0.0",
-        "@csstools/css-tokenizer": "^4.0.0",
-        "lru-cache": "^11.2.6"
+        "@csstools/css-tokenizer": "^4.0.0"
       },
       "engines": {
         "node": "^20.19.0 || ^22.12.0 || >=24.0.0"
       }
     },
     "node_modules/@asamuzakjp/dom-selector": {
-      "version": "7.0.3",
-      "resolved": "https://registry.npmjs.org/@asamuzakjp/dom-selector/-/dom-selector-7.0.3.tgz",
-      "integrity": "sha512-Q6mU0Z6bfj6YvnX2k9n0JxiIwrCFN59x/nWmYQnAqP000ruX/yV+5bp/GRcF5T8ncvfwJQ7fgfP74DlpKExILA==",
+      "version": "7.0.10",
+      "resolved": "https://registry.npmjs.org/@asamuzakjp/dom-selector/-/dom-selector-7.0.10.tgz",
+      "integrity": "sha512-KyOb19eytNSELkmdqzZZUXWCU25byIlOld5qVFg0RYdS0T3tt7jeDByxk9hIAC73frclD8GKrHttr0SUjKCCdQ==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
+        "@asamuzakjp/generational-cache": "^1.0.1",
         "@asamuzakjp/nwsapi": "^2.3.9",
         "bidi-js": "^1.0.3",
         "css-tree": "^3.2.1",
-        "is-potential-custom-element-name": "^1.0.1",
-        "lru-cache": "^11.2.7"
+        "is-potential-custom-element-name": "^1.0.1"
       },
       "engines": {
         "node": "^20.19.0 || ^22.12.0 || >=24.0.0"
       }
     },
+    "node_modules/@asamuzakjp/generational-cache": {
+      "version": "1.0.1",
+      "resolved": "https://registry.npmjs.org/@asamuzakjp/generational-cache/-/generational-cache-1.0.1.tgz",
+      "integrity": "sha512-wajfB8KqzMCN2KGNFdLkReeHncd0AslUSrvHVvvYWuU8ghncRJoA50kT3zP9MVL0+9g4/67H+cdvBskj9THPzg==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": "^20.19.0 || ^22.12.0 || >=24.0.0"
+      }
+    },
     "node_modules/@asamuzakjp/nwsapi": {
       "version": "2.3.9",
       "resolved": "https://registry.npmjs.org/@asamuzakjp/nwsapi/-/nwsapi-2.3.9.tgz",
@@ -484,9 +494,9 @@
       }
     },
     "node_modules/@babel/types": {
-      "version": "7.28.6",
-      "resolved": "https://registry.npmjs.org/@babel/types/-/types-7.28.6.tgz",
-      "integrity": "sha512-0ZrskXVEHSWIqZM/sQZ4EV3jZJXRkio/WCxaqKZP1g//CEWEPSfeZFcms4XeKBCHU0ZKnIkdJeU/kF+eRp5lBg==",
+      "version": "7.29.0",
+      "resolved": "https://registry.npmjs.org/@babel/types/-/types-7.29.0.tgz",
+      "integrity": "sha512-LwdZHpScM4Qz8Xw2iKSzS+cfglZzJGvofQICy7W7v4caru4EaAmyUuO6BGrbyQ2mYV11W0U8j5mBhd14dd3B0A==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -533,54 +543,40 @@
       "license": "MIT"
     },
     "node_modules/@chevrotain/cst-dts-gen": {
-      "version": "11.0.3",
-      "resolved": "https://registry.npmjs.org/@chevrotain/cst-dts-gen/-/cst-dts-gen-11.0.3.tgz",
-      "integrity": "sha512-BvIKpRLeS/8UbfxXxgC33xOumsacaeCKAjAeLyOn7Pcp95HiRbrpl14S+9vaZLolnbssPIUuiUd8IvgkRyt6NQ==",
+      "version": "12.0.0",
+      "resolved": "https://registry.npmjs.org/@chevrotain/cst-dts-gen/-/cst-dts-gen-12.0.0.tgz",
+      "integrity": "sha512-fSL4KXjTl7cDgf0B5Rip9Q05BOrYvkJV/RrBTE/bKDN096E4hN/ySpcBK5B24T76dlQ2i32Zc3PAE27jFnFrKg==",
       "license": "Apache-2.0",
       "dependencies": {
-        "@chevrotain/gast": "11.0.3",
-        "@chevrotain/types": "11.0.3",
-        "lodash-es": "4.17.21"
+        "@chevrotain/gast": "12.0.0",
+        "@chevrotain/types": "12.0.0"
       }
     },
-    "node_modules/@chevrotain/cst-dts-gen/node_modules/lodash-es": {
-      "version": "4.17.21",
-      "resolved": "https://registry.npmjs.org/lodash-es/-/lodash-es-4.17.21.tgz",
-      "integrity": "sha512-mKnC+QJ9pWVzv+C4/U3rRsHapFfHvQFoFB92e52xeyGMcX6/OlIl78je1u8vePzYZSkkogMPJ2yjxxsb89cxyw==",
-      "license": "MIT"
-    },
     "node_modules/@chevrotain/gast": {
-      "version": "11.0.3",
-      "resolved": "https://registry.npmjs.org/@chevrotain/gast/-/gast-11.0.3.tgz",
-      "integrity": "sha512-+qNfcoNk70PyS/uxmj3li5NiECO+2YKZZQMbmjTqRI3Qchu8Hig/Q9vgkHpI3alNjr7M+a2St5pw5w5F6NL5/Q==",
+      "version": "12.0.0",
+      "resolved": "https://registry.npmjs.org/@chevrotain/gast/-/gast-12.0.0.tgz",
+      "integrity": "sha512-1ne/m3XsIT8aEdrvT33so0GUC+wkctpUPK6zU9IlOyJLUbR0rg4G7ZiApiJbggpgPir9ERy3FRjT6T7lpgetnQ==",
       "license": "Apache-2.0",
       "dependencies": {
-        "@chevrotain/types": "11.0.3",
-        "lodash-es": "4.17.21"
+        "@chevrotain/types": "12.0.0"
       }
     },
-    "node_modules/@chevrotain/gast/node_modules/lodash-es": {
-      "version": "4.17.21",
-      "resolved": "https://registry.npmjs.org/lodash-es/-/lodash-es-4.17.21.tgz",
-      "integrity": "sha512-mKnC+QJ9pWVzv+C4/U3rRsHapFfHvQFoFB92e52xeyGMcX6/OlIl78je1u8vePzYZSkkogMPJ2yjxxsb89cxyw==",
-      "license": "MIT"
-    },
     "node_modules/@chevrotain/regexp-to-ast": {
-      "version": "11.0.3",
-      "resolved": "https://registry.npmjs.org/@chevrotain/regexp-to-ast/-/regexp-to-ast-11.0.3.tgz",
-      "integrity": "sha512-1fMHaBZxLFvWI067AVbGJav1eRY7N8DDvYCTwGBiE/ytKBgP8azTdgyrKyWZ9Mfh09eHWb5PgTSO8wi7U824RA==",
+      "version": "12.0.0",
+      "resolved": "https://registry.npmjs.org/@chevrotain/regexp-to-ast/-/regexp-to-ast-12.0.0.tgz",
+      "integrity": "sha512-p+EW9MaJwgaHguhoqwOtx/FwuGr+DnNn857sXWOi/mClXIkPGl3rn7hGNWvo31HA3vyeQxjqe+H36yZJwYU8cA==",
       "license": "Apache-2.0"
     },
     "node_modules/@chevrotain/types": {
-      "version": "11.0.3",
-      "resolved": "https://registry.npmjs.org/@chevrotain/types/-/types-11.0.3.tgz",
-      "integrity": "sha512-gsiM3G8b58kZC2HaWR50gu6Y1440cHiJ+i3JUvcp/35JchYejb2+5MVeJK0iKThYpAa/P2PYFV4hoi44HD+aHQ==",
+      "version": "12.0.0",
+      "resolved": "https://registry.npmjs.org/@chevrotain/types/-/types-12.0.0.tgz",
+      "integrity": "sha512-S+04vjFQKeuYw0/eW3U52LkAHQsB1ASxsPGsLPUyQgrZ2iNNibQrsidruDzjEX2JYfespXMG0eZmXlhA6z7nWA==",
       "license": "Apache-2.0"
     },
     "node_modules/@chevrotain/utils": {
-      "version": "11.0.3",
-      "resolved": "https://registry.npmjs.org/@chevrotain/utils/-/utils-11.0.3.tgz",
-      "integrity": "sha512-YslZMgtJUyuMbZ+aKvfF3x1f5liK4mWNxghFRv7jqRR9C3R3fAOGTTKvxXDa2Y1s9zSbcpuO0cAxDYsc9SrXoQ==",
+      "version": "12.0.0",
+      "resolved": "https://registry.npmjs.org/@chevrotain/utils/-/utils-12.0.0.tgz",
+      "integrity": "sha512-lB59uJoaGIfOOL9knQqQRfhl9g7x8/wqFkp13zTdkRu1huG9kg6IJs1O8hqj9rs6h7orGxHJUKb+mX3rPbWGhA==",
       "license": "Apache-2.0"
     },
     "node_modules/@cspotcode/source-map-support": {
@@ -628,9 +624,9 @@
       }
     },
     "node_modules/@csstools/css-calc": {
-      "version": "3.1.1",
-      "resolved": "https://registry.npmjs.org/@csstools/css-calc/-/css-calc-3.1.1.tgz",
-      "integrity": "sha512-HJ26Z/vmsZQqs/o3a6bgKslXGFAungXGbinULZO3eMsOyNJHeBBZfup5FiZInOghgoM4Hwnmw+OgbJCNg1wwUQ==",
+      "version": "3.2.0",
+      "resolved": "https://registry.npmjs.org/@csstools/css-calc/-/css-calc-3.2.0.tgz",
+      "integrity": "sha512-bR9e6o2BDB12jzN/gIbjHa5wLJ4UjD1CB9pM7ehlc0ddk6EBz+yYS1EV2MF55/HUxrHcB/hehAyt5vhsA3hx7w==",
       "dev": true,
       "funding": [
         {
@@ -652,9 +648,9 @@
       }
     },
     "node_modules/@csstools/css-color-parser": {
-      "version": "4.0.2",
-      "resolved": "https://registry.npmjs.org/@csstools/css-color-parser/-/css-color-parser-4.0.2.tgz",
-      "integrity": "sha512-0GEfbBLmTFf0dJlpsNU7zwxRIH0/BGEMuXLTCvFYxuL1tNhqzTbtnFICyJLTNK4a+RechKP75e7w42ClXSnJQw==",
+      "version": "4.1.0",
+      "resolved": "https://registry.npmjs.org/@csstools/css-color-parser/-/css-color-parser-4.1.0.tgz",
+      "integrity": "sha512-U0KhLYmy2GVj6q4T3WaAe6NPuFYCPQoE3b0dRGxejWDgcPp8TP7S5rVdM5ZrFaqu4N67X8YaPBw14dQSYx3IyQ==",
       "dev": true,
       "funding": [
         {
@@ -669,7 +665,7 @@
       "license": "MIT",
       "dependencies": {
         "@csstools/color-helpers": "^6.0.2",
-        "@csstools/css-calc": "^3.1.1"
+        "@csstools/css-calc": "^3.2.0"
       },
       "engines": {
         "node": ">=20.19.0"
@@ -1764,12 +1760,12 @@
       }
     },
     "node_modules/@mermaid-js/parser": {
-      "version": "0.6.3",
-      "resolved": "https://registry.npmjs.org/@mermaid-js/parser/-/parser-0.6.3.tgz",
-      "integrity": "sha512-lnjOhe7zyHjc+If7yT4zoedx2vo4sHaTmtkl1+or8BRTnCtDmcTpAjpzDSfCZrshM5bCoz0GyidzadJAH1xobA==",
+      "version": "1.1.0",
+      "resolved": "https://registry.npmjs.org/@mermaid-js/parser/-/parser-1.1.0.tgz",
+      "integrity": "sha512-gxK9ZX2+Fex5zu8LhRQoMeMPEHbc73UKZ0FQ54YrQtUxE1VVhMwzeNtKRPAu5aXks4FasbMe4xB4bWrmq6Jlxw==",
       "license": "MIT",
       "dependencies": {
-        "langium": "3.3.1"
+        "langium": "^4.0.0"
       }
     },
     "node_modules/@napi-rs/wasm-runtime": {
@@ -2224,257 +2220,6 @@
       "dev": true,
       "license": "MIT"
     },
-    "node_modules/@swc/core": {
-      "version": "1.15.8",
-      "resolved": "https://registry.npmjs.org/@swc/core/-/core-1.15.8.tgz",
-      "integrity": "sha512-T8keoJjXaSUoVBCIjgL6wAnhADIb09GOELzKg10CjNg+vLX48P93SME6jTfte9MZIm5m+Il57H3rTSk/0kzDUw==",
-      "dev": true,
-      "hasInstallScript": true,
-      "license": "Apache-2.0",
-      "optional": true,
-      "peer": true,
-      "dependencies": {
-        "@swc/counter": "^0.1.3",
-        "@swc/types": "^0.1.25"
-      },
-      "engines": {
-        "node": ">=10"
-      },
-      "funding": {
-        "type": "opencollective",
-        "url": "https://opencollective.com/swc"
-      },
-      "optionalDependencies": {
-        "@swc/core-darwin-arm64": "1.15.8",
-        "@swc/core-darwin-x64": "1.15.8",
-        "@swc/core-linux-arm-gnueabihf": "1.15.8",
-        "@swc/core-linux-arm64-gnu": "1.15.8",
-        "@swc/core-linux-arm64-musl": "1.15.8",
-        "@swc/core-linux-x64-gnu": "1.15.8",
-        "@swc/core-linux-x64-musl": "1.15.8",
-        "@swc/core-win32-arm64-msvc": "1.15.8",
-        "@swc/core-win32-ia32-msvc": "1.15.8",
-        "@swc/core-win32-x64-msvc": "1.15.8"
-      },
-      "peerDependencies": {
-        "@swc/helpers": ">=0.5.17"
-      },
-      "peerDependenciesMeta": {
-        "@swc/helpers": {
-          "optional": true
-        }
-      }
-    },
-    "node_modules/@swc/core-darwin-arm64": {
-      "version": "1.15.8",
-      "resolved": "https://registry.npmjs.org/@swc/core-darwin-arm64/-/core-darwin-arm64-1.15.8.tgz",
-      "integrity": "sha512-M9cK5GwyWWRkRGwwCbREuj6r8jKdES/haCZ3Xckgkl8MUQJZA3XB7IXXK1IXRNeLjg6m7cnoMICpXv1v1hlJOg==",
-      "cpu": [
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+      "version": "4.18.1",
+      "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.18.1.tgz",
+      "integrity": "sha512-dMInicTPVE8d1e5otfwmmjlxkZoUpiVLwyeTdUsi/Caj/gfzzblBcCE5sRHV/AsjuCmxWrte2TNGSYuCeCq+0Q==",
       "dev": true,
       "license": "MIT"
     },
     "node_modules/lodash-es": {
-      "version": "4.17.22",
-      "resolved": "https://registry.npmjs.org/lodash-es/-/lodash-es-4.17.22.tgz",
-      "integrity": "sha512-XEawp1t0gxSi9x01glktRZ5HDy0HXqrM0x5pXQM98EaI0NxO6jVM7omDOxsuEo5UIASAnm2bRp1Jt/e0a2XU8Q==",
+      "version": "4.18.1",
+      "resolved": "https://registry.npmjs.org/lodash-es/-/lodash-es-4.18.1.tgz",
+      "integrity": "sha512-J8xewKD/Gk22OZbhpOVSwcs60zhd95ESDwezOFuA3/099925PdHJ7OFHNTGtajL3AlZkykD32HykiMo+BIBI8A==",
       "license": "MIT"
     },
     "node_modules/longest-streak": {
@@ -7072,27 +6837,28 @@
       }
     },
     "node_modules/mermaid": {
-      "version": "11.12.2",
-      "resolved": "https://registry.npmjs.org/mermaid/-/mermaid-11.12.2.tgz",
-      "integrity": "sha512-n34QPDPEKmaeCG4WDMGy0OT6PSyxKCfy2pJgShP+Qow2KLrvWjclwbc3yXfSIf4BanqWEhQEpngWwNp/XhZt6w==",
+      "version": "11.14.0",
+      "resolved": "https://registry.npmjs.org/mermaid/-/mermaid-11.14.0.tgz",
+      "integrity": "sha512-GSGloRsBs+JINmmhl0JDwjpuezCsHB4WGI4NASHxL3fHo3o/BRXTxhDLKnln8/Q0lRFRyDdEjmk1/d5Sn1Xz8g==",
       "license": "MIT",
       "dependencies": {
         "@braintree/sanitize-url": "^7.1.1",
-        "@iconify/utils": "^3.0.1",
-        "@mermaid-js/parser": "^0.6.3",
+        "@iconify/utils": "^3.0.2",
+        "@mermaid-js/parser": "^1.1.0",
         "@types/d3": "^7.4.3",
-        "cytoscape": "^3.29.3",
+        "@upsetjs/venn.js": "^2.0.0",
+        "cytoscape": "^3.33.1",
         "cytoscape-cose-bilkent": "^4.1.0",
         "cytoscape-fcose": "^2.2.0",
         "d3": "^7.9.0",
         "d3-sankey": "^0.12.3",
-        "dagre-d3-es": "7.0.13",
-        "dayjs": "^1.11.18",
-        "dompurify": "^3.2.5",
-        "katex": "^0.16.22",
+        "dagre-d3-es": "7.0.14",
+        "dayjs": "^1.11.19",
+        "dompurify": "^3.3.1",
+        "katex": "^0.16.25",
         "khroma": "^2.1.0",
-        "lodash-es": "^4.17.21",
-        "marked": "^16.2.1",
+        "lodash-es": "^4.17.23",
+        "marked": "^16.3.0",
         "roughjs": "^4.6.6",
         "stylis": "^4.3.6",
         "ts-dedent": "^2.2.0",
@@ -8317,10 +8083,13 @@
       }
     },
     "node_modules/proxy-from-env": {
-      "version": "1.1.0",
-      "resolved": "https://registry.npmjs.org/proxy-from-env/-/proxy-from-env-1.1.0.tgz",
-      "integrity": "sha512-D+zkORCbA9f1tdWRK0RaCR3GPv50cMxcrz4X8k5LTSUD1Dkw47mKJEZQNunItRTkWwgtaUSo1RVFRIG9ZXiFYg==",
-      "license": "MIT"
+      "version": "2.1.0",
+      "resolved": "https://registry.npmjs.org/proxy-from-env/-/proxy-from-env-2.1.0.tgz",
+      "integrity": "sha512-cJ+oHTW1VAEa8cJslgmUZrc+sjRKgAKl3Zyse6+PV38hZe/V6Z14TbCuXcan9F9ghlz4QrFr2c92TNF82UkYHA==",
+      "license": "MIT",
+      "engines": {
+        "node": ">=10"
+      }
     },
     "node_modules/punycode": {
       "version": "2.3.1",
@@ -9006,9 +8775,9 @@
       "license": "MIT"
     },
     "node_modules/tailwindcss": {
-      "version": "4.1.18",
-      "resolved": "https://registry.npmjs.org/tailwindcss/-/tailwindcss-4.1.18.tgz",
-      "integrity": "sha512-4+Z+0yiYyEtUVCScyfHCxOYP06L5Ne+JiHhY2IjR2KWMIWhJOYZKLSGZaP5HkZ8+bY0cxfzwDE5uOmzFXyIwxw==",
+      "version": "4.2.2",
+      "resolved": "https://registry.npmjs.org/tailwindcss/-/tailwindcss-4.2.2.tgz",
+      "integrity": "sha512-KWBIxs1Xb6NoLdMVqhbhgwZf2PGBpPEiwOqgI4pFIYbNTfBXiKYyWoTsXgBQ9WFg/OlhnvHaY+AEpW7wSmFo2Q==",
       "license": "MIT"
     },
     "node_modules/tapable": {
@@ -10270,9 +10039,9 @@
       "license": "MIT"
     },
     "node_modules/vscode-uri": {
-      "version": "3.0.8",
-      "resolved": "https://registry.npmjs.org/vscode-uri/-/vscode-uri-3.0.8.tgz",
-      "integrity": "sha512-AyFQ0EVmsOZOlAnxoFOGOq1SQDWAB7C6aqMGS23svWAllfOaxbuFvcT8D1i8z3Gyn8fraVeZNNmN6e9bxxXkKw==",
+      "version": "3.1.0",
+      "resolved": "https://registry.npmjs.org/vscode-uri/-/vscode-uri-3.1.0.tgz",
+      "integrity": "sha512-/BpdSx+yCQGnCvecbyXdxHDkuk55/G3xwnC0GqY4gmQ3j+A+g8kzzgB4Nk/SINjqn6+waqw3EgbVF2QKExkRxQ==",
       "license": "MIT"
     },
     "node_modules/w3c-xmlserializer": {
@@ -10289,15 +10058,15 @@
       }
     },
     "node_modules/wait-on": {
-      "version": "8.0.5",
-      "resolved": "https://registry.npmjs.org/wait-on/-/wait-on-8.0.5.tgz",
-      "integrity": "sha512-J3WlS0txVHkhLRb2FsmRg3dkMTCV1+M6Xra3Ho7HzZDHpE7DCOnoSoCJsZotrmW3uRMhvIJGSKUKrh/MeF4iag==",
+      "version": "9.0.5",
+      "resolved": "https://registry.npmjs.org/wait-on/-/wait-on-9.0.5.tgz",
+      "integrity": "sha512-qgnbHDfDTRIp73ANEJNRW/7kn8CrDUcvZz18xotJQku/P4saTGkbIzvnMZebPmVvVNUiRq1qWAPyqCH+W4H8KA==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "axios": "^1.12.1",
-        "joi": "^18.0.1",
-        "lodash": "^4.17.21",
+        "axios": "^1.15.0",
+        "joi": "^18.1.2",
+        "lodash": "^4.18.1",
         "minimist": "^1.2.8",
         "rxjs": "^7.8.2"
       },
@@ -10305,7 +10074,7 @@
         "wait-on": "bin/wait-on"
       },
       "engines": {
-        "node": ">=12.0.0"
+        "node": ">=20.0.0"
       }
     },
     "node_modules/webidl-conversions": {

gitnexus-web/package.json

@@ -39,7 +39,7 @@
     "langchain": "^1.2.10",
     "lru-cache": "^11.2.4",
     "lucide-react": "^0.562.0",
-    "mermaid": "^11.12.2",
+    "mermaid": "^11.14.0",
     "mnemonist": "^0.39.0",
     "pandemonium": "^2.4.0",
     "react": "^18.3.1",
@@ -49,12 +49,12 @@
     "react-zoom-pan-pinch": "^3.7.0",
     "remark-gfm": "^4.0.1",
     "sigma": "^3.0.2",
-    "tailwindcss": "^4.1.18",
+    "tailwindcss": "^4.2.2",
     "uuid": "^13.0.0",
     "zod": "^3.25.76"
   },
   "devDependencies": {
-    "@babel/types": "^7.28.5",
+    "@babel/types": "^7.29.0",
     "@playwright/test": "^1.58.2",
     "@testing-library/jest-dom": "^6.9.1",
     "@testing-library/react": "^16.3.2",
@@ -67,11 +67,11 @@
     "@vercel/node": "^5.5.16",
     "@vitejs/plugin-react": "^5.1.0",
     "@vitest/coverage-v8": "^3.2.4",
-    "jsdom": "^29.0.0",
+    "jsdom": "^29.0.2",
     "tree-sitter-wasms": "^0.1.13",
     "typescript": "^5.4.5",
     "vite": "^5.2.0",
     "vitest": "^3.2.4",
-    "wait-on": "^8.0.5"
+    "wait-on": "^9.0.5"
   }
 }

gitnexus-web/vite.config.ts

@@ -16,6 +16,7 @@ export default defineConfig({
     alias: {
       '@': path.resolve(__dirname, './src'),
       '@shared': path.resolve(__dirname, '../shared'),
+      'gitnexus-shared': path.resolve(__dirname, '../gitnexus-shared/src/index.ts'),
       // Fix for Rollup failing to resolve this deep import from @langchain/anthropic
       '@anthropic-ai/sdk/lib/transform-json-schema': path.resolve(
         __dirname,

gitnexus/CHANGELOG.md

@@ -2,6 +2,52 @@
 
 All notable changes to GitNexus will be documented in this file.
 
+## [Unreleased]
+
+### Performance
+
+- **`analyze` ~33% faster** — moved FTS index creation from the analyze pipeline to first-use lazy initialisation. The 5 `CREATE_FTS_INDEX` calls cost ~440 ms each in LadybugDB regardless of table size (≈2 s fixed overhead) and dominated runtime on small repos and slow CI runners. The cost now amortises across the first `query`/`context` call in a session via a new `ensureFTSIndex` helper. Mini-repo `analyze` measured locally on Windows: 6.4 s → 4.0 s warm; on CI Windows runners (≈3× slower) restores comfortable headroom against the 30 s e2e test budget.
+
+## [1.6.2] - 2026-04-18
+
+### Added
+
+- **Docker support** — containerized ingestion and MCP serving for reproducible runs on CI and container platforms (#848)
+- **Language-agnostic heritage extractor** — config+factory pattern for class-heritage extraction (EXTENDS / IMPLEMENTS), completing the extractor refactor alongside method/field/call/variable (#890)
+- **Language-agnostic call extractor** — config+factory pattern that collapses ~225 lines of inline parse-worker logic into declarative per-language configs (#877)
+- **Language-agnostic variable extractor** — structured metadata for `Const` / `Static` / `Variable` nodes via config+factory pattern (#878)
+- **AST-aware embedding chunking** — offset-based splitting preserves symbol boundaries, improving semantic search precision on large files (#889)
+- **HTTP consumer detection for jQuery and axios object-form** — `$.ajax` / `$.get` / `$.post` and `axios({ url, method })` now recognized as HTTP call sites (#887)
+
+### Fixed
+
+- **Python external dotted imports** — avoid spurious same-file matches when an import path like `foo.bar.baz` refers to a third-party module (#899)
+- **Worker warnings no longer terminate ingestion** — non-fatal parser warnings keep the pipeline running instead of aborting the run (#900, #261)
+- **Global-install upgrade `ENOTEMPTY`** — devendored `tree-sitter-proto` install lifecycle + preinstall cleanup so `npm i -g gitnexus@latest` succeeds on top of an older install (#843, #846)
+- **`env.cacheDir`** now defaults to a user-writable location, unblocking ingestion on systems where the install directory is read-only (#845)
+- **Content-hash staleness detection for embeddings** — zero-node rebuilds no longer skip vector-index creation, fixing semantic search after selective re-analysis (#831)
+- **`tree-sitter-c-sharp` version pin** — locked to 0.23.1 to avoid a breaking change in a transitive prerelease (#834)
+- **`release-drafter` v7 CI** — replaced the removed `disable-releaser` flag with `dry-run` so release-note drafts still work
+- **`npm arborist` crash from `tree-sitter-dart`** — switched the dependency URL format so `npm install` no longer crashes on clean installs
+- **Service-group `ManifestExtractor`** — `config.links` now wires the manifest extractor properly, restoring cross-link discovery that had silently dropped to zero
+
+### Changed
+
+- **SemanticModel wired as a first-class resolution input (SM-20)** — `call-processor`, `resolution-context`, `type-env`, and `heritage-map` now consult `table.model.*` directly; 37 internal call sites migrated off the SymbolTable wrapper (#885)
+- **Per-strategy `ImportSemantics` hooks** — `named` / `wildcard-transitive` / `wildcard-leaf` / `namespace` strategies split into composable hooks, replacing the monolithic conditional (Strategies 1–4 of #886)
+- **Class extraction configs moved to `configs/` subdirectory** — per-language class configs now co-locate with the other extractor configs, completing the extractor layer's directory convention (#879)
+- **CLI AI-context trimmed** — duplicated CLAUDE.md block removed from the shipped context, reducing token usage in LLM-consuming workflows (#904)
+- **LLM context files optimized** — AI-consumed documentation tuned for accuracy and token efficiency (#857)
+- **Workflow concurrency standardized** — all CI workflows adopt the consistent concurrency key pattern documented in CONTRIBUTING.md; release-note labeling automated (#837)
+- **E2E status-ready timeout raised** — 45s accommodates parallel-worker startup variance on CI (#908)
+
+### Chore / Dependencies
+
+- **tree-sitter 0.25 upgrade readiness** — daily Dependabot monitor for the upcoming major-version bump (#847)
+- Dependency bumps: `glob` 11.1.0 → 13.0.6 (#867), `commander` 12.1.0 → 14.0.3 (#868), `@huggingface/transformers` (#869), `@modelcontextprotocol/sdk` (#866), `lru-cache` 11.2.7 → 11.3.5 (#870), `mnemonist` 0.39.8 → 0.40.3 (#871), `@ladybugdb/core` (#873)
+- gitnexus-web dependency bumps: `mermaid` 11.12.2 → 11.14.0 (#860), `tailwindcss` (#861), `jsdom` 29.0.0 → 29.0.2 (#863), `wait-on` 8.0.5 → 9.0.5 (#859), `@vitest/coverage-v8` (#864)
+- GitHub Actions bumps: `actions/checkout` 4.3.1 → 6.0.2 (#842), `actions/upload-artifact` 4.6.2 → 7.0.1 (#838), `actions/setup-node` 4.4.0 → 6.3.0 (#841), `actions/cache` 5.0.4 → 5.0.5 (#840), `actions/github-script` 7.0.1 → 9.0.0 (#850), `dorny/paths-filter` 3.0.2 → 4.0.1 (#839), `amannn/action-semantic-pull-request` 6.1.1 (#853), `release-drafter/release-drafter` 6.0.0 → 7.2.0 (#852), `marocchino/sticky-pull-request-comment` 3.0.4 (#851), `softprops/action-gh-release` 2.5.0 → 3.0.0 (#849)
+
 ## [1.6.1] - 2026-04-13
 
 ### Added

gitnexus/Dockerfile.test

@@ -1,6 +1,6 @@
 FROM node:20-bookworm
 WORKDIR /app
-RUN apt-get update && apt-get install -y python3 make g++ && rm -rf /var/lib/apt/lists/*
+RUN apt-get -o Acquire::Check-Valid-Until=false -o Acquire::Check-Date=false update && apt-get install -y python3 make g++ && rm -rf /var/lib/apt/lists/*
 COPY . .
 RUN npm ci --ignore-scripts \
     && node scripts/patch-tree-sitter-swift.cjs \

gitnexus/README.md

@@ -166,11 +166,11 @@ gitnexus wiki [path]             # Generate LLM-powered docs from knowledge grap
 gitnexus wiki --model <model>    # Wiki with custom LLM model (default: gpt-4o-mini)
 
 # Repository groups (multi-repo / monorepo service tracking)
-gitnexus group create <name>     # Create a repository group
-gitnexus group add <name> <repo> # Add a repo to a group
-gitnexus group remove <name> <repo> # Remove a repo from a group
-gitnexus group list [name]       # List groups, or show one group's config
-gitnexus group sync <name>       # Extract contracts and match across repos/services
+gitnexus group create <name>                                   # Create a repository group
+gitnexus group add <group> <groupPath> <registryName>          # Add a repo to a group. <groupPath> is a hierarchy path (e.g. hr/hiring/backend); <registryName> is the repo's name from the registry (see `gitnexus list`)
+gitnexus group remove <group> <groupPath>                      # Remove a repo from a group by its hierarchy path
+gitnexus group list [name]                                     # List groups, or show one group's config
+gitnexus group sync <name>                                     # Extract contracts and match across repos/services
 gitnexus group contracts <name>  # Inspect extracted contracts and cross-links
 gitnexus group query <name> <q>  # Search execution flows across all repos in a group
 gitnexus group status <name>     # Check staleness of repos in a group

gitnexus/package.json

@@ -1,6 +1,6 @@
 {
   "name": "gitnexus",
-  "version": "1.6.1",
+  "version": "1.6.2",
   "description": "Graph-powered code intelligence for AI agents. Index any codebase, query via MCP or CLI.",
   "author": "Abhigyan Patwari",
   "license": "PolyForm-Noncommercial-1.0.0",
@@ -51,22 +51,23 @@
     "prepack": "node scripts/build.js"
   },
   "dependencies": {
-    "@huggingface/transformers": "^3.0.0",
+    "@huggingface/transformers": "^4.1.0",
     "@ladybugdb/core": "^0.15.2",
     "@modelcontextprotocol/sdk": "^1.0.0",
     "@scarf/scarf": "^1.4.0",
     "cli-progress": "^3.12.0",
-    "commander": "^12.0.0",
+    "commander": "^14.0.3",
     "cors": "^2.8.5",
     "express": "^4.19.2",
-    "glob": "^11.0.0",
-    "graphology": "^0.25.4",
+    "glob": "^13.0.6",
+    "graphology": "^0.26.0",
     "graphology-indices": "^0.17.0",
     "graphology-utils": "^2.3.0",
     "ignore": "^7.0.5",
     "js-yaml": "^4.1.1",
+    "jsonc-parser": "^3.3.1",
     "lru-cache": "^11.0.0",
-    "mnemonist": "^0.39.0",
+    "mnemonist": "^0.40.3",
     "onnxruntime-node": "^1.24.0",
     "pandemonium": "^2.4.0",
     "tree-sitter": "^0.21.1",
@@ -81,7 +82,7 @@
     "tree-sitter-ruby": "^0.23.1",
     "tree-sitter-rust": "0.23.1",
     "tree-sitter-typescript": "^0.23.2",
-    "uuid": "^13.0.0"
+    "uuid": "^14.0.0"
   },
   "optionalDependencies": {
     "node-addon-api": "^8.0.0",
@@ -92,14 +93,14 @@
     "tree-sitter-swift": "^0.6.0"
   },
   "devDependencies": {
-    "gitnexus-shared": "file:../gitnexus-shared",
     "@types/cli-progress": "^3.11.6",
     "@types/cors": "^2.8.17",
     "@types/express": "^4.17.21",
     "@types/js-yaml": "^4.0.9",
-    "@types/node": "^20.0.0",
-    "@types/uuid": "^10.0.0",
+    "@types/node": "^25.6.0",
+    "@types/uuid": "^11.0.0",
     "@vitest/coverage-v8": "^4.0.18",
+    "gitnexus-shared": "file:../gitnexus-shared",
     "tsx": "^4.0.0",
     "typescript": "^5.4.5",
     "vitest": "^4.0.18"

gitnexus/scripts/bench-scope-resolution.ts

@@ -0,0 +1,134 @@
+/**
+ * Synthetic benchmark for scope-resolution. Builds a large in-memory
+ * Python workspace and times runScopeResolution against it directly,
+ * isolating the resolution cost from parse / heritage / pipeline
+ * overhead.
+ *
+ * Usage: REGISTRY_PRIMARY_PYTHON=1 npx tsx scripts/bench-scope-resolution.ts
+ */
+process.env.REGISTRY_PRIMARY_PYTHON = '1';
+
+import { generateId } from '../src/lib/utils.js';
+import { createKnowledgeGraph } from '../src/core/graph/graph.js';
+import { runScopeResolution } from '../src/core/ingestion/scope-resolution/index.js';
+import { pythonScopeResolver } from '../src/core/ingestion/languages/python/scope-resolver.js';
+
+const N_CLASSES = Number(process.env.BENCH_CLASSES ?? '60');
+const N_USERS = Number(process.env.BENCH_USERS ?? '40');
+const ITERS = Number(process.env.BENCH_ITERS ?? '5');
+
+function buildWorkspace(): { path: string; content: string }[] {
+  const files: { path: string; content: string }[] = [];
+
+  // Build N_CLASSES "model" files, each defining a class with a few methods.
+  for (let i = 0; i < N_CLASSES; i++) {
+    const lines: string[] = [];
+    for (let j = 0; j < 5; j++) {
+      lines.push(`class Model${i}_${j}:`);
+      lines.push(`    name: str`);
+      lines.push(`    def save(self) -> bool:`);
+      lines.push(`        return True`);
+      lines.push(`    def update(self, name: str) -> "Model${i}_${j}":`);
+      lines.push(`        self.name = name`);
+      lines.push(`        return self`);
+      lines.push(`    def get_other(self) -> "Model${i}_${(j + 1) % 5}":`);
+      lines.push(`        return Model${i}_${(j + 1) % 5}()`);
+      lines.push('');
+    }
+    files.push({ path: `models/m${i}.py`, content: lines.join('\n') });
+  }
+
+  // Build N_USERS "user" files that import from a few model files
+  // and exercise the receiver-bound dispatcher heavily.
+  for (let u = 0; u < N_USERS; u++) {
+    const targets = [u % N_CLASSES, (u + 1) % N_CLASSES, (u + 2) % N_CLASSES];
+    const imports = targets
+      .map((t) => `from models.m${t} import Model${t}_0, Model${t}_1, Model${t}_2`)
+      .join('\n');
+    const calls: string[] = [];
+    for (let k = 0; k < 30; k++) {
+      const t = targets[k % 3]!;
+      const j = k % 3;
+      calls.push(`    m${k} = Model${t}_${j}()`);
+      calls.push(`    m${k}.save()`);
+      calls.push(`    m${k}.update("x").save()`);
+      calls.push(`    m${k}.get_other().save()`);
+    }
+    const content = `${imports}\n\ndef use_${u}() -> None:\n${calls.join('\n')}\n`;
+    files.push({ path: `app/u${u}.py`, content });
+  }
+
+  return files;
+}
+
+function buildGraph(files: { path: string; content: string }[]) {
+  const graph = createKnowledgeGraph();
+  // Pre-populate File / Class / Function nodes the resolver expects.
+  for (const f of files) {
+    const fileId = generateId('File', f.path);
+    graph.addNode({
+      id: fileId,
+      label: 'File',
+      properties: { name: f.path, filePath: f.path },
+    });
+
+    // Lightweight regex-extract class & def names so the lookup index
+    // has something to find. Real pipeline builds these via parse phase;
+    // for the bench this stand-in is enough to exercise the resolver.
+    const classRe = /^class (\w+)/gm;
+    const defRe = /^\s*def (\w+)/gm;
+    let m: RegExpExecArray | null;
+    while ((m = classRe.exec(f.content)) !== null) {
+      const name = m[1]!;
+      const id = generateId('Class', `${f.path}:${name}`);
+      graph.addNode({
+        id,
+        label: 'Class',
+        properties: { name, filePath: f.path, qualifiedName: name },
+      });
+    }
+    while ((m = defRe.exec(f.content)) !== null) {
+      const name = m[1]!;
+      const id = generateId('Function', `${f.path}:${name}`);
+      graph.addNode({
+        id,
+        label: 'Function',
+        properties: { name, filePath: f.path, qualifiedName: name },
+      });
+    }
+  }
+  return graph;
+}
+
+async function main() {
+  const files = buildWorkspace();
+  console.log(`bench: ${files.length} files (${N_CLASSES} models × 5 classes + ${N_USERS} users)`);
+  console.log(`       × ${ITERS} iterations\n`);
+
+  // Warmup
+  for (let i = 0; i < 2; i++) {
+    const graph = buildGraph(files);
+    runScopeResolution({ graph, files, onWarn: () => {} }, pythonScopeResolver);
+  }
+
+  const samples: number[] = [];
+  for (let i = 0; i < ITERS; i++) {
+    const graph = buildGraph(files);
+    const start = process.hrtime.bigint();
+    runScopeResolution({ graph, files, onWarn: () => {} }, pythonScopeResolver);
+    const end = process.hrtime.bigint();
+    const ms = Number(end - start) / 1_000_000;
+    samples.push(ms);
+    console.log(`  iter ${i + 1}: ${ms.toFixed(0)} ms`);
+  }
+
+  samples.sort((a, b) => a - b);
+  const median = samples[Math.floor(samples.length / 2)]!;
+  const min = samples[0]!;
+  console.log(`\nmin: ${min.toFixed(0)} ms · median: ${median.toFixed(0)} ms`);
+}
+
+main().catch((err) => {
+  console.error(err);
+  process.exit(1);
+});

gitnexus/scripts/ci-list-migrated-languages.ts

@@ -0,0 +1,24 @@
+/**
+ * CI helper — emits the `MIGRATED_LANGUAGES` set as a JSON matrix array for
+ * GitHub Actions (`.github/workflows/ci-scope-parity.yml`).
+ *
+ * Consumed by the `discover` job in that workflow. Each entry has:
+ *   - `slug`: lowercase language id, matching `test/integration/resolvers/<slug>.test.ts`.
+ *   - `envvar`: uppercase suffix used to build the `REGISTRY_PRIMARY_<envvar>` toggle.
+ *
+ * Run with `npx tsx scripts/ci-list-migrated-languages.ts`. The script
+ * writes a single JSON array to stdout (no wrapper object) so the
+ * workflow can pipe it straight into `$GITHUB_OUTPUT`.
+ */
+
+import { MIGRATED_LANGUAGES } from '../src/core/ingestion/registry-primary-flag.js';
+
+const entries = [...MIGRATED_LANGUAGES].map((slug) => {
+  const s = String(slug);
+  return {
+    slug: s,
+    envvar: s.toUpperCase().replace(/-/g, '_'),
+  };
+});
+
+process.stdout.write(JSON.stringify(entries));

gitnexus/shadow-parity-dashboard/index.html

@@ -0,0 +1,291 @@
+<!doctype html>
+<html lang="en">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width,initial-scale=1" />
+    <title>GitNexus — Shadow Parity Dashboard</title>
+    <!--
+      Static dashboard for the RFC #909 shadow-mode parity report.
+
+      Reads `latest.json` from this directory and renders a per-language
+      parity table. Zero build step, zero runtime dependencies — a
+      single file that any browser or file:// context can open.
+
+      Usage:
+          # from repo root, after a shadow-mode run
+          cp .gitnexus/shadow-parity/latest.json gitnexus/shadow-parity-dashboard/
+          open gitnexus/shadow-parity-dashboard/index.html
+
+      CI artifact wiring (follow-up): the CI job publishes a snapshot
+      of this directory + latest.json as a downloadable bundle per run.
+    -->
+    <style>
+      :root {
+        color-scheme: light dark;
+        --fg: #1f2937;
+        --fg-muted: #6b7280;
+        --bg: #ffffff;
+        --bg-muted: #f9fafb;
+        --border: #e5e7eb;
+        --good: #16a34a;
+        --warn: #d97706;
+        --bad: #dc2626;
+        --primary-tag-legacy: #7c3aed;
+        --primary-tag-registry: #0ea5e9;
+      }
+      @media (prefers-color-scheme: dark) {
+        :root {
+          --fg: #e5e7eb;
+          --fg-muted: #9ca3af;
+          --bg: #111827;
+          --bg-muted: #1f2937;
+          --border: #374151;
+        }
+      }
+      html,
+      body {
+        margin: 0;
+        padding: 0;
+        background: var(--bg);
+        color: var(--fg);
+        font:
+          14px/1.45 system-ui,
+          -apple-system,
+          sans-serif;
+      }
+      main {
+        max-width: 1200px;
+        margin: 0 auto;
+        padding: 24px 16px;
+      }
+      h1 {
+        font-size: 20px;
+        margin: 0 0 4px;
+      }
+      .meta {
+        color: var(--fg-muted);
+        font-size: 12px;
+        margin-bottom: 20px;
+      }
+      .cards {
+        display: grid;
+        grid-template-columns: repeat(auto-fit, minmax(180px, 1fr));
+        gap: 10px;
+        margin-bottom: 20px;
+      }
+      .card {
+        border: 1px solid var(--border);
+        border-radius: 6px;
+        padding: 10px 12px;
+        background: var(--bg-muted);
+      }
+      .card .k {
+        color: var(--fg-muted);
+        font-size: 11px;
+        text-transform: uppercase;
+        letter-spacing: 0.04em;
+      }
+      .card .v {
+        font-size: 20px;
+        font-weight: 600;
+      }
+      table {
+        width: 100%;
+        border-collapse: collapse;
+        font-variant-numeric: tabular-nums;
+      }
+      th,
+      td {
+        padding: 6px 10px;
+        text-align: right;
+        border-bottom: 1px solid var(--border);
+      }
+      th:first-child,
+      td:first-child {
+        text-align: left;
+      }
+      thead th {
+        font-weight: 600;
+        color: var(--fg-muted);
+        font-size: 12px;
+        background: var(--bg-muted);
+      }
+      tbody tr:hover {
+        background: var(--bg-muted);
+      }
+      .parity {
+        font-weight: 600;
+      }
+      .parity.good {
+        color: var(--good);
+      }
+      .parity.warn {
+        color: var(--warn);
+      }
+      .parity.bad {
+        color: var(--bad);
+      }
+      .tag {
+        display: inline-block;
+        padding: 1px 6px;
+        border-radius: 10px;
+        font-size: 10px;
+        margin-left: 6px;
+        color: white;
+      }
+      .tag.legacy {
+        background: var(--primary-tag-legacy);
+      }
+      .tag.registry {
+        background: var(--primary-tag-registry);
+      }
+      .empty {
+        padding: 40px;
+        text-align: center;
+        color: var(--fg-muted);
+      }
+      code {
+        font-family: ui-monospace, SFMono-Regular, Menlo, monospace;
+        background: var(--bg-muted);
+        padding: 1px 4px;
+        border-radius: 3px;
+      }
+    </style>
+  </head>
+  <body>
+    <main>
+      <h1>Shadow Parity — RFC #909</h1>
+      <div class="meta" id="meta">loading <code>latest.json</code>…</div>
+      <div class="cards" id="cards"></div>
+      <table id="per-language">
+        <thead>
+          <tr>
+            <th>Language</th>
+            <th>Total</th>
+            <th>Agree</th>
+            <th>Only legacy</th>
+            <th>Only new</th>
+            <th>Disagree</th>
+            <th>Both empty</th>
+            <th>Parity</th>
+          </tr>
+        </thead>
+        <tbody></tbody>
+      </table>
+      <div id="empty" class="empty" style="display: none">
+        No records yet. Enable <code>GITNEXUS_SHADOW_MODE=1</code> and run ingestion to populate.
+      </div>
+    </main>
+    <script>
+      /* global fetch, document */
+      (async function () {
+        const tbody = document.querySelector('#per-language tbody');
+        const cards = document.getElementById('cards');
+        const meta = document.getElementById('meta');
+        const empty = document.getElementById('empty');
+        const table = document.getElementById('per-language');
+
+        let payload;
+        try {
+          const r = await fetch('./latest.json', { cache: 'no-store' });
+          if (!r.ok) throw new Error('HTTP ' + r.status);
+          payload = await r.json();
+        } catch (err) {
+          meta.textContent = 'Failed to load latest.json: ' + err.message;
+          table.style.display = 'none';
+          empty.style.display = 'block';
+          return;
+        }
+
+        const primary = payload.primaryByLanguage || {};
+        const report = payload.report || {};
+        const perLang = report.perLanguage || [];
+        const overall = report.overall || {};
+
+        meta.textContent =
+          'Run ' +
+          payload.runId +
+          ' — generated ' +
+          payload.generatedAt +
+          ' (schema v' +
+          payload.schemaVersion +
+          ')';
+
+        // Overall summary cards.
+        cards.innerHTML = '';
+        const overallParity = overall.parity !== undefined ? overall.parity : 0;
+        cards.appendChild(makeCard('Total calls', overall.totalCalls ?? 0));
+        cards.appendChild(makeCard('Both agree', overall.bothAgree ?? 0));
+        cards.appendChild(makeCard('Disagree', overall.bothDisagree ?? 0));
+        cards.appendChild(makeCard('Overall parity', formatPct(overallParity)));
+
+        if (!perLang.length) {
+          table.style.display = 'none';
+          empty.style.display = 'block';
+          return;
+        }
+
+        for (const row of perLang) {
+          const tr = document.createElement('tr');
+          const primaryTag = primary[row.language];
+          const tag = primaryTag
+            ? '<span class="tag ' + primaryTag + '">primary: ' + primaryTag + '</span>'
+            : '';
+          const parityClass = parityClassFor(row.parity);
+          tr.innerHTML =
+            '<td>' +
+            escape(row.language) +
+            tag +
+            '</td>' +
+            '<td>' +
+            row.totalCalls +
+            '</td>' +
+            '<td>' +
+            row.bothAgree +
+            '</td>' +
+            '<td>' +
+            row.onlyLegacy +
+            '</td>' +
+            '<td>' +
+            row.onlyNew +
+            '</td>' +
+            '<td>' +
+            row.bothDisagree +
+            '</td>' +
+            '<td>' +
+            row.bothEmpty +
+            '</td>' +
+            '<td class="parity ' +
+            parityClass +
+            '">' +
+            formatPct(row.parity) +
+            '</td>';
+          tbody.appendChild(tr);
+        }
+
+        function makeCard(k, v) {
+          const div = document.createElement('div');
+          div.className = 'card';
+          div.innerHTML =
+            '<div class="k">' + escape(k) + '</div><div class="v">' + escape(String(v)) + '</div>';
+          return div;
+        }
+        function formatPct(x) {
+          if (typeof x !== 'number' || !isFinite(x)) return '—';
+          return (x * 100).toFixed(1) + '%';
+        }
+        function parityClassFor(x) {
+          if (typeof x !== 'number') return '';
+          if (x >= 0.95) return 'good';
+          if (x >= 0.8) return 'warn';
+          return 'bad';
+        }
+        function escape(s) {
+          return String(s).replace(/[&<>"']/g, function (c) {
+            return { '&': '&amp;', '<': '&lt;', '>': '&gt;', '"': '&quot;', "'": '&#39;' }[c];
+          });
+        }
+      })();
+    </script>
+  </body>
+</html>

gitnexus/src/cli/ai-context.ts

@@ -32,6 +32,33 @@ export interface AIContextOptions {
 const GITNEXUS_START_MARKER = '<!-- gitnexus:start -->';
 const GITNEXUS_END_MARKER = '<!-- gitnexus:end -->';
 
+/**
+ * Find the index of a section marker that occupies its own line.
+ * Unlike `indexOf`, this rejects inline prose references like
+ * `` See the `<!-- gitnexus:start -->` block `` that appear
+ * mid-sentence (#1041). A marker counts as section-position only when:
+ *   - preceded by newline or start-of-file, AND
+ *   - followed by newline, `\r` (CRLF files), or end-of-file.
+ * The generator always emits each marker alone on its line, so this
+ * matches every legitimate section and none of the inline mentions.
+ *
+ * `startFrom` lets the end-marker lookup start after the already-found
+ * start marker, avoiding a scan from 0 and guaranteeing we never pick
+ * up an end marker that appears earlier in the file than the start.
+ */
+function findSectionMarkerIndex(content: string, marker: string, startFrom = 0): number {
+  let idx = content.indexOf(marker, startFrom);
+  while (idx !== -1) {
+    const atLineStart = idx === 0 || content[idx - 1] === '\n';
+    const endPos = idx + marker.length;
+    const atLineEnd =
+      endPos === content.length || content[endPos] === '\n' || content[endPos] === '\r';
+    if (atLineStart && atLineEnd) return idx;
+    idx = content.indexOf(marker, idx + 1);
+  }
+  return -1;
+}
+
 /**
  * Generate the full GitNexus context content.
  *
@@ -101,19 +128,6 @@ This project is indexed by GitNexus as **${projectName}**${noStats ? '' : ` (${s
 - When exploring unfamiliar code, use \`gitnexus_query({query: "concept"})\` to find execution flows instead of grepping. It returns process-grouped results ranked by relevance.
 - When you need full context on a specific symbol — callers, callees, which execution flows it participates in — use \`gitnexus_context({name: "symbolName"})\`.
 
-## When Debugging
-
-1. \`gitnexus_query({query: "<error or symptom>"})\` — find execution flows related to the issue
-2. \`gitnexus_context({name: "<suspect function>"})\` — see all callers, callees, and process participation
-3. \`READ gitnexus://repo/${projectName}/process/{processName}\` — trace the full execution flow step by step
-4. For regressions: \`gitnexus_detect_changes({scope: "compare", base_ref: "main"})\` — see what your branch changed
-
-## When Refactoring
-
-- **Renaming**: MUST use \`gitnexus_rename({symbol_name: "old", new_name: "new", dry_run: true})\` first. Review the preview — graph edits are safe, text_search edits need manual review. Then run with \`dry_run: false\`.
-- **Extracting/Splitting**: MUST run \`gitnexus_context({name: "target"})\` to see all incoming/outgoing refs, then \`gitnexus_impact({target: "target", direction: "upstream"})\` to find all external callers before moving code.
-- After any refactor: run \`gitnexus_detect_changes({scope: "all"})\` to verify only expected files changed.
-
 ## Never Do
 
 - NEVER edit a function, class, or method without first running \`gitnexus_impact\` on it.
@@ -121,25 +135,6 @@ This project is indexed by GitNexus as **${projectName}**${noStats ? '' : ` (${s
 - NEVER rename symbols with find-and-replace — use \`gitnexus_rename\` which understands the call graph.
 - NEVER commit changes without running \`gitnexus_detect_changes()\` to check affected scope.
 
-## Tools Quick Reference
-
-| Tool | When to use | Command |
-|------|-------------|---------|
-| \`query\` | Find code by concept | \`gitnexus_query({query: "auth validation"})\` |
-| \`context\` | 360-degree view of one symbol | \`gitnexus_context({name: "validateUser"})\` |
-| \`impact\` | Blast radius before editing | \`gitnexus_impact({target: "X", direction: "upstream"})\` |
-| \`detect_changes\` | Pre-commit scope check | \`gitnexus_detect_changes({scope: "staged"})\` |
-| \`rename\` | Safe multi-file rename | \`gitnexus_rename({symbol_name: "old", new_name: "new", dry_run: true})\` |
-| \`cypher\` | Custom graph queries | \`gitnexus_cypher({query: "MATCH ..."})\` |
-
-## Impact Risk Levels
-
-| Depth | Meaning | Action |
-|-------|---------|--------|
-| d=1 | WILL BREAK — direct callers/importers | MUST update these |
-| d=2 | LIKELY AFFECTED — indirect deps | Should test |
-| d=3 | MAY NEED TESTING — transitive | Test if critical path |
-
 ## Resources
 
 | Resource | Use for |
@@ -149,37 +144,11 @@ This project is indexed by GitNexus as **${projectName}**${noStats ? '' : ` (${s
 | \`gitnexus://repo/${projectName}/processes\` | All execution flows |
 | \`gitnexus://repo/${projectName}/process/{name}\` | Step-by-step execution trace |
 
-## Self-Check Before Finishing
-
-Before completing any code modification task, verify:
-1. \`gitnexus_impact\` was run for all modified symbols
-2. No HIGH/CRITICAL risk warnings were ignored
-3. \`gitnexus_detect_changes()\` confirms changes match expected scope
-4. All d=1 (WILL BREAK) dependents were updated
-
-## Keeping the Index Fresh
-
-After committing code changes, the GitNexus index becomes stale. Re-run analyze to update it:
-
-\`\`\`bash
-npx gitnexus analyze
-\`\`\`
-
-If the index previously included embeddings, preserve them by adding \`--embeddings\`:
-
-\`\`\`bash
-npx gitnexus analyze --embeddings
-\`\`\`
-
-To check whether embeddings exist, inspect \`.gitnexus/meta.json\` — the \`stats.embeddings\` field shows the count (0 means no embeddings). **Running analyze without \`--embeddings\` will delete any previously generated embeddings.**
-
-> Claude Code users: A PostToolUse hook handles this automatically after \`git commit\` and \`git merge\`.
-
 ${
   groupNames && groupNames.length > 0
     ? `## Cross-Repo Groups
 
-This repository is listed under GitNexus **group(s): ${groupNames.join(', ')}** (see \`~/.gitnexus/groups/\`). For blast radius across repository boundaries, use MCP tools \`group_impact\`, \`group_sync\`, \`group_query\`, \`group_contracts\`, \`group_status\`, and \`group_list\`. From the terminal: \`npx gitnexus group list\`, \`npx gitnexus group sync <name>\`, \`npx gitnexus group impact <name> --target <symbol> --repo <group-path>\`.
+This repository is listed under GitNexus **group(s): ${groupNames.join(', ')}** (see \`~/.gitnexus/groups/\`). For cross-repo analysis, use MCP tools \`impact\`, \`query\`, and \`context\` with \`repo\` set to \`@<groupName>\` or \`@<groupName>/<memberPath>\` (paths match keys in that group’s \`group.yaml\`). Use \`group_list\` / \`group_sync\` for membership and sync. From the terminal: \`npx gitnexus group list\`, \`npx gitnexus group sync <name>\`, \`npx gitnexus group impact <name> --target <symbol> --repo <group-path>\`.
 
 `
     : ''
@@ -221,9 +190,18 @@ async function upsertGitNexusSection(
 
   const existingContent = await fs.readFile(filePath, 'utf-8');
 
-  // Check if GitNexus section already exists
-  const startIdx = existingContent.indexOf(GITNEXUS_START_MARKER);
-  const endIdx = existingContent.indexOf(GITNEXUS_END_MARKER);
+  // Check if GitNexus section already exists. Matching is restricted
+  // to markers that occupy their own line so that inline prose
+  // references (e.g. `` See the `<!-- gitnexus:start -->` block `` in
+  // the shipped CLAUDE.md) are NOT treated as section delimiters
+  // (#1041). The end-marker scan starts after the start-marker so it
+  // can never pick up an earlier end in the file.
+  const startIdx = findSectionMarkerIndex(existingContent, GITNEXUS_START_MARKER);
+  const endIdx = findSectionMarkerIndex(
+    existingContent,
+    GITNEXUS_END_MARKER,
+    startIdx === -1 ? 0 : startIdx,
+  );
 
   if (startIdx !== -1 && endIdx !== -1 && endIdx > startIdx) {
     // Replace existing section

gitnexus/src/cli/analyze.ts

@@ -13,7 +13,11 @@ import { execFileSync } from 'child_process';
 import v8 from 'v8';
 import cliProgress from 'cli-progress';
 import { closeLbug } from '../core/lbug/lbug-adapter.js';
-import { getStoragePaths, getGlobalRegistryPath } from '../storage/repo-manager.js';
+import {
+  getStoragePaths,
+  getGlobalRegistryPath,
+  RegistryNameCollisionError,
+} from '../storage/repo-manager.js';
 import { getGitRoot, hasGitDir } from '../storage/git.js';
 import { runFullAnalysis } from '../core/run-analyze.js';
 import fs from 'fs/promises';
@@ -59,6 +63,21 @@ export interface AnalyzeOptions {
   noStats?: boolean;
   /** Index the folder even when no .git directory is present. */
   skipGit?: boolean;
+  /**
+   * Override the default basename-derived registry `name` with a
+   * user-supplied alias (#829). Disambiguates repos whose paths share a
+   * basename. Persisted — subsequent re-analyses of the same path without
+   * `--name` preserve the alias.
+   */
+  name?: string;
+  /**
+   * Allow registration even when another path already uses the same
+   * `--name` alias (#829). Intentionally a distinct flag from `--force`
+   * because the user may want to coexist under the same name WITHOUT
+   * paying the cost of a pipeline re-index. Maps to registerRepo's
+   * `allowDuplicateName` option end-to-end.
+   */
+  allowDuplicateName?: boolean;
 }
 
 export const analyzeCommand = async (inputPath?: string, options?: AnalyzeOptions) => {
@@ -186,11 +205,20 @@ export const analyzeCommand = async (inputPath?: string, options?: AnalyzeOption
     const result = await runFullAnalysis(
       repoPath,
       {
+        // Pipeline re-index — OR'd with --skills because skill generation
+        // needs a fresh pipelineResult. Has no bearing on the registry
+        // collision guard (see allowDuplicateName below).
         force: options?.force || options?.skills,
         embeddings: options?.embeddings,
         skipGit: options?.skipGit,
         skipAgentsMd: options?.skipAgentsMd,
         noStats: options?.noStats,
+        registryName: options?.name,
+        // Registry-collision bypass — its own CLI flag, intentionally NOT
+        // overloading --force. A user who hits the collision guard should
+        // be able to accept the duplicate name without also paying the
+        // cost of a full pipeline re-index. See #829 review round 2.
+        allowDuplicateName: options?.allowDuplicateName,
       },
       {
         onProgress: (_phase, percent, message) => {
@@ -298,6 +326,22 @@ export const analyzeCommand = async (inputPath?: string, options?: AnalyzeOption
     bar.stop();
 
     const msg = err.message || String(err);
+
+    // Registry name-collision from --name (#829) — surface as an
+    // actionable error rather than a generic stack-trace.
+    if (err instanceof RegistryNameCollisionError) {
+      console.error(`\n  Registry name collision:\n`);
+      console.error(`    "${err.registryName}" is already used by "${err.existingPath}".\n`);
+      console.error(`  Options:`);
+      console.error(`    • Pick a different alias:  gitnexus analyze --name <alias>`);
+      console.error(
+        `    • Allow the duplicate:     gitnexus analyze --allow-duplicate-name  (leaves "-r ${err.registryName}" ambiguous)`,
+      );
+      console.error('');
+      process.exitCode = 1;
+      return;
+    }
+
     console.error(`\n  Analysis failed: ${msg}\n`);
 
     // Provide helpful guidance for known failure modes

gitnexus/src/cli/clean.ts

@@ -6,7 +6,13 @@
  */
 
 import fs from 'fs/promises';
-import { findRepo, unregisterRepo, listRegisteredRepos } from '../storage/repo-manager.js';
+import {
+  findRepo,
+  unregisterRepo,
+  listRegisteredRepos,
+  assertSafeStoragePath,
+  UnsafeStoragePathError,
+} from '../storage/repo-manager.js';
 
 export const cleanCommand = async (options?: { force?: boolean; all?: boolean }) => {
   // --all flag: clean all indexed repos
@@ -27,6 +33,24 @@ export const cleanCommand = async (options?: { force?: boolean; all?: boolean })
 
     const entries = await listRegisteredRepos();
     for (const entry of entries) {
+      // Safety guard (#1003 review — @magyargergo): same rationale as
+      // remove.ts. `~/.gitnexus/registry.json` is user-writable, so a
+      // corrupted or hand-edited entry could point storagePath at the
+      // repo root, an empty string, or anywhere else — and
+      // fs.rm(recursive: true) on any of those would be catastrophic.
+      // Skip poisoned entries without touching disk, but keep going
+      // through the rest of the registry (preserves the existing
+      // per-repo error-tolerance semantics of `clean --all`).
+      try {
+        assertSafeStoragePath(entry);
+      } catch (err) {
+        if (err instanceof UnsafeStoragePathError) {
+          console.error(`Refusing to clean ${entry.name}: ${err.message}`);
+          continue;
+        }
+        throw err;
+      }
+
       try {
         await fs.rm(entry.storagePath, { recursive: true, force: true });
         await unregisterRepo(entry.path);

gitnexus/src/cli/group.ts

@@ -184,6 +184,83 @@ export function registerGroupCommands(program: Command): void {
       }
     });
 
+  group
+    .command('impact <name>')
+    .description('Cross-repo impact for a symbol in one member repo of a group')
+    .requiredOption('--target <symbol>', 'Symbol or file name to analyze')
+    .requiredOption(
+      '--repo <groupPath>',
+      'Member path from group.yaml (e.g. app/backend), not the indexed repo name',
+    )
+    .option('--direction <dir>', 'upstream or downstream', 'upstream')
+    .option('--service <path>', 'Optional monorepo service directory prefix (path filter)')
+    .option(
+      '--subgroup <path>',
+      'Optional prefix limiting which group repos participate in cross fan-out',
+    )
+    .option('--max-depth <n>', 'Max graph traversal depth')
+    .option('--cross-depth <n>', 'Cross-repository hop depth')
+    .option('--min-confidence <n>', 'Minimum relation confidence (0–1)')
+    .option('--include-tests', 'Include test files in traversal', false)
+    .option('--timeout-ms <n>', 'Phase-1 local impact wall time in milliseconds')
+    .option('--json', 'JSON output')
+    .action(async (name: string, opts: Record<string, string | boolean | undefined>) => {
+      const { LocalBackend } = await import('../mcp/local/local-backend.js');
+
+      const backend = new LocalBackend();
+      try {
+        await backend.init();
+
+        const payload: Record<string, unknown> = {
+          name,
+          repo: opts.repo,
+          target: opts.target,
+          direction: (opts.direction as string) || 'upstream',
+        };
+        if (opts.service) payload.service = opts.service;
+        if (opts.subgroup) payload.subgroup = opts.subgroup;
+        if (opts.maxDepth !== undefined && opts.maxDepth !== '') {
+          const n = parseInt(String(opts.maxDepth), 10);
+          if (!Number.isNaN(n)) payload.maxDepth = n;
+        }
+        if (opts.crossDepth !== undefined && opts.crossDepth !== '') {
+          const n = parseInt(String(opts.crossDepth), 10);
+          if (!Number.isNaN(n)) payload.crossDepth = n;
+        }
+        if (opts.minConfidence !== undefined && opts.minConfidence !== '') {
+          const n = parseFloat(String(opts.minConfidence));
+          if (!Number.isNaN(n)) payload.minConfidence = n;
+        }
+        if (opts.timeoutMs !== undefined && opts.timeoutMs !== '') {
+          const n = parseInt(String(opts.timeoutMs), 10);
+          if (!Number.isNaN(n)) payload.timeoutMs = n;
+        }
+        if (opts.includeTests) payload.includeTests = true;
+
+        const raw = await backend.getGroupService().groupImpact(payload);
+        if (raw && typeof raw === 'object' && 'error' in raw) {
+          console.error(String((raw as { error: string }).error));
+          process.exitCode = 1;
+          return;
+        }
+
+        if (opts.json) {
+          console.log(JSON.stringify(raw, null, 2));
+        } else {
+          const summary = (raw as { summary?: Record<string, number> })?.summary;
+          const risk = (raw as { risk?: string })?.risk;
+          console.log(`Group impact for "${name}" (${String(opts.repo)}): risk=${risk ?? '?'}`);
+          if (summary) {
+            console.log(
+              `  direct=${summary.direct ?? 0} processes=${summary.processes_affected ?? 0} cross=${summary.cross_repo_hits ?? 0}`,
+            );
+          }
+        }
+      } finally {
+        await backend.dispose().catch(() => {});
+      }
+    });
+
   group
     .command('query <name> <query>')
     .description('Search execution flows across all repos in a group')

gitnexus/src/cli/index-repo.ts

@@ -17,7 +17,7 @@ import {
   addToGitignore,
   registerRepo,
 } from '../storage/repo-manager.js';
-import { getGitRoot, isGitRepo } from '../storage/git.js';
+import { getGitRoot, getRemoteUrl, isGitRepo } from '../storage/git.js';
 
 export interface IndexOptions {
   force?: boolean;
@@ -107,6 +107,13 @@ export const indexCommand = async (inputPathParts?: string[], options?: IndexOpt
   }
 
   // ── Register in global registry ───────────────────────────────────
+  // Refresh the on-disk meta with a freshly captured `remoteUrl` if
+  // it's missing, so an `index` of an older `.gitnexus/` still gets
+  // sibling-clone fingerprinting on subsequent use without forcing a
+  // full re-analyze.
+  if (!meta.remoteUrl && isGitRepo(repoPath)) {
+    meta.remoteUrl = getRemoteUrl(repoPath);
+  }
   await registerRepo(repoPath, meta);
   await addToGitignore(repoPath);
 

gitnexus/src/cli/index.ts

@@ -28,6 +28,16 @@ program
   .option('--skip-agents-md', 'Skip updating the gitnexus section in AGENTS.md and CLAUDE.md')
   .option('--no-stats', 'Omit volatile file/symbol counts from AGENTS.md and CLAUDE.md')
   .option('--skip-git', 'Index a folder without requiring a .git directory')
+  .option(
+    '--name <alias>',
+    'Register this repo under a custom name in ~/.gitnexus/registry.json ' +
+      '(disambiguates repos whose paths share a basename, e.g. two different .../app folders)',
+  )
+  .option(
+    '--allow-duplicate-name',
+    'Register this repo even if another path already uses the same --name alias. ' +
+      'Leaves `-r <name>` ambiguous for the two paths; use -r <path> to disambiguate.',
+  )
   .option('-v, --verbose', 'Enable verbose ingestion warnings (default: false)')
   .addHelpText(
     'after',
@@ -73,6 +83,15 @@ program
   .option('--all', 'Clean all indexed repos')
   .action(createLazyAction(() => import('./clean.js'), 'cleanCommand'));
 
+program
+  .command('remove <target>')
+  .description(
+    'Delete the GitNexus index for a registered repo (by alias, name, or absolute path). ' +
+      'Unlike `clean`, does not require being inside the repo. Idempotent on unknown targets.',
+  )
+  .option('-f, --force', 'Skip confirmation prompt')
+  .action(createLazyAction(() => import('./remove.js'), 'removeCommand'));
+
 program
   .command('wiki [path]')
   .description('Generate repository wiki from knowledge graph')
@@ -141,6 +160,15 @@ program
   .option('-r, --repo <name>', 'Target repository')
   .action(createLazyAction(() => import('./tool.js'), 'cypherCommand'));
 
+program
+  .command('detect-changes')
+  .alias('detect_changes')
+  .description('Map git diff hunks to indexed symbols and affected execution flows')
+  .option('-s, --scope <scope>', 'What to analyze: unstaged, staged, all, or compare', 'unstaged')
+  .option('-b, --base-ref <ref>', 'Branch/commit for compare scope (e.g. main)')
+  .option('-r, --repo <name>', 'Target repository')
+  .action(createLazyAction(() => import('./tool.js'), 'detectChangesCommand'));
+
 // ─── Eval Server (persistent daemon for SWE-bench) ─────────────────
 
 program

gitnexus/src/cli/list.ts

@@ -17,12 +17,23 @@ export const listCommand = async () => {
 
   console.log(`\n  Indexed Repositories (${entries.length})\n`);
 
+  // Count occurrences of each name so colliding entries can be
+  // disambiguated in the header (#829). Unique-name entries render
+  // identically to pre-#829 output; only collisions gain a suffix.
+  const nameCounts = new Map<string, number>();
+  for (const e of entries) {
+    const key = e.name.toLowerCase();
+    nameCounts.set(key, (nameCounts.get(key) ?? 0) + 1);
+  }
+
   for (const entry of entries) {
     const indexedDate = new Date(entry.indexedAt).toLocaleString();
     const stats = entry.stats || {};
     const commitShort = entry.lastCommit?.slice(0, 7) || 'unknown';
+    const hasCollision = (nameCounts.get(entry.name.toLowerCase()) ?? 0) > 1;
+    const header = hasCollision ? `${entry.name}  (${entry.path})` : entry.name;
 
-    console.log(`  ${entry.name}`);
+    console.log(`  ${header}`);
     console.log(`    Path:    ${entry.path}`);
     console.log(`    Indexed: ${indexedDate}`);
     console.log(`    Commit:  ${commitShort}`);

gitnexus/src/cli/remove.ts

@@ -0,0 +1,110 @@
+/**
+ * Remove Command (#664)
+ *
+ * Delete the `.gitnexus/` index for a registered repo and unregister it
+ * from the global registry (~/.gitnexus/registry.json). The target is
+ * identified by alias / basename-derived name / remote-inferred name /
+ * absolute path — no `--repo` flag, just a positional argument so the
+ * destructive-command ergonomics match `clean` (which is also
+ * destructive but scoped to `process.cwd()`).
+ *
+ * Compared to `clean`:
+ *   - `clean`  acts on the repo discovered by walking up from cwd.
+ *   - `remove` acts on any registered repo identified by name or path.
+ *
+ * Behaviour notes:
+ *   - Idempotent on unknown targets: exits 0 with a warning so that
+ *     `remove X && analyze Y` keeps working in scripts. Per #664:
+ *     "behave atomically and idempotently so retries are safe".
+ *   - Atomic order mirrors `clean`: fs.rm FIRST, then unregister. A
+ *     partial failure leaves the registry pointing at a missing dir
+ *     (recoverable by `listRegisteredRepos({ validate: true })` on
+ *     next read) rather than the opposite, which would orphan
+ *     .gitnexus/ directories on disk.
+ *   - `-f` / `--force` matches the confirmation-skip semantics of
+ *     `clean -f`. (Distinct from `analyze --force`, which re-indexes;
+ *     here there is no pipeline, so no conflation.)
+ */
+
+import fs from 'fs/promises';
+import {
+  readRegistry,
+  resolveRegistryEntry,
+  assertSafeStoragePath,
+  unregisterRepo,
+  RegistryNotFoundError,
+  RegistryAmbiguousTargetError,
+  UnsafeStoragePathError,
+} from '../storage/repo-manager.js';
+
+export const removeCommand = async (target: string, options?: { force?: boolean }) => {
+  // Read the registry snapshot once and pass it to the resolver — this
+  // lets us render the "before" state in the dry-run path without a
+  // second disk read.
+  const entries = await readRegistry();
+
+  let entry;
+  try {
+    entry = resolveRegistryEntry(entries, target);
+  } catch (err) {
+    if (err instanceof RegistryNotFoundError) {
+      // Idempotent: missing target is a no-op warning, not an error.
+      // The `availableNames` hint comes from the error itself so users
+      // can see what they might have meant.
+      console.warn(`Nothing to remove: ${err.message}`);
+      return;
+    }
+    if (err instanceof RegistryAmbiguousTargetError) {
+      // Duplicate aliases are allowed via --allow-duplicate-name (#829);
+      // refuse to guess which one the user meant — surface the full list
+      // and exit non-zero so scripts don't silently pick the wrong repo.
+      console.error(`Error: ${err.message}`);
+      process.exit(1);
+    }
+    throw err;
+  }
+
+  // Confirmation gate — same shape as `clean`. Default is a dry-run
+  // that describes what would be deleted; `--force` actually deletes.
+  if (!options?.force) {
+    console.log(`This will delete the GitNexus index for: ${entry.name}`);
+    console.log(`   Path:    ${entry.path}`);
+    console.log(`   Storage: ${entry.storagePath}`);
+    console.log('\nRun with --force to confirm deletion.');
+    return;
+  }
+
+  // Safety guard (#1003 review — @magyargergo): refuse to proceed if
+  // the registry entry's `storagePath` isn't the canonical
+  // `<entry.path>/.gitnexus` subfolder. `~/.gitnexus/registry.json` is
+  // user-writable, so a corrupted or hand-edited entry could point
+  // storagePath at the repo root, an empty string (→ cwd), a parent
+  // dir, or anywhere else; `fs.rm(recursive: true, force: true)` on
+  // any of those would be a runtime disaster. Bail before touching
+  // disk, with an actionable hint for recovering a broken registry.
+  try {
+    assertSafeStoragePath(entry);
+  } catch (err) {
+    if (err instanceof UnsafeStoragePathError) {
+      console.error(`Error: ${err.message}`);
+      process.exit(1);
+    }
+    throw err;
+  }
+
+  // Deletion order: fs.rm first, then unregister. If fs.rm fails mid-way,
+  // the registry entry stays so the user can retry. If fs.rm succeeds but
+  // unregister throws (e.g. ENOSPC on registry write), the entry becomes
+  // orphaned — `listRegisteredRepos({ validate: true })` prunes those on
+  // next read, so the failure is self-healing.
+  try {
+    await fs.rm(entry.storagePath, { recursive: true, force: true });
+    await unregisterRepo(entry.path);
+    console.log(`Removed: ${entry.name}`);
+    console.log(`   Path:    ${entry.path}`);
+    console.log(`   Storage: ${entry.storagePath}`);
+  } catch (err) {
+    console.error(`Failed to remove ${entry.name}:`, err);
+    process.exit(1);
+  }
+};

gitnexus/src/cli/setup.ts

@@ -13,6 +13,7 @@ import { execFile, execFileSync } from 'child_process';
 import { promisify } from 'util';
 import { fileURLToPath } from 'url';
 import { glob } from 'glob';
+import { parseTree, modify, applyEdits, ParseError } from 'jsonc-parser';
 import { getGlobalDir } from '../storage/repo-manager.js';
 
 const __filename = fileURLToPath(import.meta.url);
@@ -75,6 +76,23 @@ function getMcpEntry() {
   };
 }
 
+/**
+ * OpenCode uses a different MCP format: { type: "local", command: [...] }
+ * where command is a flat array (command + args combined).
+ */
+function getOpenCodeMcpEntry() {
+  const bin = resolveGitnexusBin();
+
+  if (bin) {
+    return { type: 'local', command: [bin, 'mcp'] };
+  }
+
+  if (process.platform === 'win32') {
+    return { type: 'local', command: ['cmd', '/c', 'npx', '-y', 'gitnexus@latest', 'mcp'] };
+  }
+  return { type: 'local', command: ['npx', '-y', 'gitnexus@latest', 'mcp'] };
+}
+
 /**
  * Merge gitnexus entry into an existing MCP config JSON object.
  * Returns the updated config.
@@ -110,6 +128,62 @@ async function writeJsonFile(filePath: string, data: any): Promise<void> {
   await fs.writeFile(filePath, JSON.stringify(data, null, 2) + '\n', 'utf-8');
 }
 
+/**
+ * Detect indentation style from file content.
+ * Returns formatting options matching the file's existing style.
+ */
+function detectIndentation(raw: string): { tabSize: number; insertSpaces: boolean } {
+  const firstIndented = raw.match(/^( +|\t)/m);
+  if (!firstIndented) return { tabSize: 2, insertSpaces: true };
+  if (firstIndented[1] === '\t') return { tabSize: 1, insertSpaces: false };
+  return { tabSize: firstIndented[1].length, insertSpaces: true };
+}
+
+/**
+ * Merge a key/value pair into a JSONC config file, preserving comments and formatting.
+ * If the file is genuinely corrupt (not valid JSONC), leaves it untouched.
+ */
+async function mergeJsoncFile(
+  filePath: string,
+  keyPath: string[],
+  value: unknown,
+): Promise<boolean> {
+  let raw: string;
+  try {
+    raw = await fs.readFile(filePath, 'utf-8');
+  } catch {
+    raw = '';
+  }
+
+  if (raw.trim().length === 0) {
+    const config: any = {};
+    let parent: any = config;
+    for (let i = 0; i < keyPath.length; i++) {
+      if (i === keyPath.length - 1) {
+        parent[keyPath[i]] = value;
+      } else {
+        parent[keyPath[i]] = {};
+        parent = parent[keyPath[i]];
+      }
+    }
+    await writeJsonFile(filePath, config);
+    return true;
+  }
+
+  const parseErrors: ParseError[] = [];
+  const tree = parseTree(raw, parseErrors);
+
+  if (tree && tree.type === 'object' && parseErrors.length === 0) {
+    const formattingOptions = detectIndentation(raw);
+    const edits = modify(raw, keyPath, value, { formattingOptions });
+    const result = applyEdits(raw, edits);
+    await fs.writeFile(filePath, result, 'utf-8');
+    return true;
+  }
+
+  return false;
+}
+
 /**
  * Check if a directory exists
  */
@@ -267,12 +341,14 @@ async function setupOpenCode(result: SetupResult): Promise<void> {
 
   const configPath = path.join(opencodeDir, 'opencode.json');
   try {
-    const existing = await readJsonFile(configPath);
-    const config = existing || {};
-    if (!config.mcp) config.mcp = {};
-    config.mcp.gitnexus = getMcpEntry();
-    await writeJsonFile(configPath, config);
-    result.configured.push('OpenCode');
+    const ok = await mergeJsoncFile(configPath, ['mcp', 'gitnexus'], getOpenCodeMcpEntry());
+    if (ok) {
+      result.configured.push('OpenCode');
+    } else {
+      result.errors.push(
+        'OpenCode: opencode.json is corrupt — skipping to preserve existing content',
+      );
+    }
   } catch (err: any) {
     result.errors.push(`OpenCode: ${err.message}`);
   }

gitnexus/src/cli/tool.ts

@@ -164,3 +164,55 @@ export async function cypherCommand(
   });
   output(result);
 }
+
+function formatDetectChangesResult(result: any): string {
+  if (result?.error) return `Error: ${result.error}`;
+
+  const summary = result?.summary || {};
+  if ((summary.changed_count || 0) === 0) {
+    return 'No changes detected.';
+  }
+
+  const lines: string[] = [];
+  lines.push(`Changes: ${summary.changed_files || 0} files, ${summary.changed_count || 0} symbols`);
+  lines.push(`Affected processes: ${summary.affected_count || 0}`);
+  lines.push(`Risk level: ${summary.risk_level || 'unknown'}`);
+  lines.push('');
+
+  const changed = result?.changed_symbols || [];
+  if (changed.length > 0) {
+    lines.push('Changed symbols:');
+    for (const symbol of changed.slice(0, 15)) {
+      lines.push(`  ${symbol.type} ${symbol.name} → ${symbol.filePath}`);
+    }
+    if (changed.length > 15) {
+      lines.push(`  ... and ${changed.length - 15} more`);
+    }
+    lines.push('');
+  }
+
+  const affected = result?.affected_processes || [];
+  if (affected.length > 0) {
+    lines.push('Affected execution flows:');
+    for (const processInfo of affected.slice(0, 10)) {
+      const steps = (processInfo.changed_steps || []).map((s: any) => s.symbol).join(', ');
+      lines.push(`  • ${processInfo.name} (${processInfo.step_count} steps) — changed: ${steps}`);
+    }
+  }
+
+  return lines.join('\n').trim();
+}
+
+export async function detectChangesCommand(options?: {
+  scope?: string;
+  baseRef?: string;
+  repo?: string;
+}): Promise<void> {
+  const backend = await getBackend();
+  const result = await backend.callTool('detect_changes', {
+    scope: options?.scope || 'unstaged',
+    base_ref: options?.baseRef,
+    repo: options?.repo,
+  });
+  output(formatDetectChangesResult(result));
+}

gitnexus/src/core/embeddings/ast-utils.ts

@@ -64,16 +64,16 @@ const FUNCTION_LIKE_TYPES = new Set([
  * numbers don't apply.
  */
 export const findFunctionNode = (root: any): any | null => {
-  if (FUNCTION_LIKE_TYPES.has(root.type)) return root;
-
-  for (let i = 0; i < root.namedChildCount; i++) {
-    const child = root.namedChild(i);
-    if (!child) continue;
-    if (FUNCTION_LIKE_TYPES.has(child.type)) return child;
-    const found = findFunctionNode(child);
-    if (found) return found;
+  // Iterative DFS — avoids stack overflow on deeply nested ASTs.
+  const stack = [root];
+  while (stack.length > 0) {
+    const node = stack.pop()!;
+    if (FUNCTION_LIKE_TYPES.has(node.type)) return node;
+    for (let i = node.namedChildCount - 1; i >= 0; i--) {
+      const child = node.namedChild(i);
+      if (child) stack.push(child);
+    }
   }
-
   return null;
 };
 
@@ -98,15 +98,15 @@ export const findDeclarationNode = (root: any): any | null => {
     'impl_item', // Rust: impl
   ]);
 
-  if (CLASS_LIKE_TYPES.has(root.type)) return root;
-
-  for (let i = 0; i < root.namedChildCount; i++) {
-    const child = root.namedChild(i);
-    if (!child) continue;
-    if (CLASS_LIKE_TYPES.has(child.type)) return child;
-    const found = findDeclarationNode(child);
-    if (found) return found;
+  // Iterative DFS — avoids stack overflow on deeply nested ASTs.
+  const stack = [root];
+  while (stack.length > 0) {
+    const node = stack.pop()!;
+    if (CLASS_LIKE_TYPES.has(node.type)) return node;
+    for (let i = node.namedChildCount - 1; i >= 0; i--) {
+      const child = node.namedChild(i);
+      if (child) stack.push(child);
+    }
   }
-
   return null;
 };

gitnexus/src/core/embeddings/chunker.ts

@@ -13,6 +13,12 @@ import { characterChunk } from './character-chunk.js';
 import type { Chunk } from './character-chunk.js';
 import { ensureAndParse, findDeclarationNode, findFunctionNode } from './ast-utils.js';
 import { buildLineIndex, resolveChunkLines } from './line-index.js';
+import {
+  CHUNKING_RULES,
+  CHUNK_MODE_AST_DECLARATION,
+  CHUNK_MODE_AST_FUNCTION,
+  type ChunkingRule,
+} from './types.js';
 
 /**
  * Main chunkNode function: dispatches by label
@@ -40,31 +46,39 @@ export const chunkNode = async (
     ];
   }
 
-  // Only function-like labels get AST chunking
-  if (label === 'Function' || label === 'Method' || label === 'Constructor') {
-    try {
-      const astChunks = await astChunk(content, filePath, startLine, endLine, chunkSize, overlap);
-      if (astChunks.length > 0) return astChunks;
-    } catch {
-      // AST parsing failed — fall through to character fallback
-    }
+  const rule = CHUNKING_RULES[label];
+  if (!rule) {
+    return characterChunk(content, startLine, endLine, chunkSize, overlap);
   }
 
-  if (label === 'Class' || label === 'Interface') {
-    try {
-      const declarationChunks = await declarationChunk(
-        label,
+  try {
+    if (rule.mode === CHUNK_MODE_AST_FUNCTION) {
+      const astChunks = await astChunk(
         content,
         filePath,
         startLine,
         endLine,
         chunkSize,
         overlap,
+        rule,
+      );
+      if (astChunks.length > 0) return astChunks;
+    }
+
+    if (rule.mode === CHUNK_MODE_AST_DECLARATION) {
+      const declarationChunks = await declarationChunk(
+        content,
+        filePath,
+        startLine,
+        endLine,
+        chunkSize,
+        overlap,
+        rule,
       );
       if (declarationChunks.length > 0) return declarationChunks;
-    } catch {
-      // AST parsing failed — fall through to character fallback
     }
+  } catch {
+    // AST parsing failed — fall through to character fallback
   }
 
   // Character-based fallback for everything else
@@ -83,6 +97,7 @@ const astChunk = async (
   endLine: number,
   chunkSize: number,
   overlap: number,
+  rule: ChunkingRule,
 ): Promise<Chunk[]> => {
   const tree = await ensureAndParse(content, filePath);
   if (!tree) return [];
@@ -121,8 +136,8 @@ const astChunk = async (
     statements,
     targetNode.startIndex,
     targetNode.endIndex,
-    true,
-    true,
+    rule.includePrefix,
+    rule.includeSuffix,
   );
 };
 
@@ -145,13 +160,13 @@ const FIELD_LIKE_MEMBER_TYPES = new Set([
 ]);
 
 const declarationChunk = async (
-  label: 'Class' | 'Interface',
   content: string,
   filePath: string,
   startLine: number,
   endLine: number,
   chunkSize: number,
   overlap: number,
+  rule: ChunkingRule,
 ): Promise<Chunk[]> => {
   const tree = await ensureAndParse(content, filePath);
   if (!tree) return [];
@@ -162,7 +177,7 @@ const declarationChunk = async (
   const bodyNode = getDeclarationBodyNode(targetNode);
   if (!bodyNode) return [];
 
-  const members = collectDeclarationUnits(bodyNode, label);
+  const members = collectDeclarationUnits(bodyNode, rule.groupFields);
   if (members.length === 0) return [];
 
   return chunkByUnits(
@@ -174,8 +189,8 @@ const declarationChunk = async (
     members,
     targetNode.startIndex,
     targetNode.endIndex,
-    false,
-    false,
+    rule.includePrefix,
+    rule.includeSuffix,
   );
 };
 
@@ -237,14 +252,22 @@ const chunkByUnits = (
 
     if (candidateEndOffset - chunkStartOffset > chunkSize) {
       const oversizedUnit = units[chunkStartUnitIdx];
+      const oversizedStartOffset =
+        chunkStartUnitIdx === 0 && includeContainerPrefixOnFirstChunk
+          ? containerStartOffset
+          : oversizedUnit.startIndex;
+      const oversizedEndOffset =
+        chunkStartUnitIdx === units.length - 1 && includeContainerSuffixOnLastChunk
+          ? containerEndOffset
+          : oversizedUnit.endIndex;
       const oversizedLineRange = resolveChunkLines(
         lineOffsets,
-        oversizedUnit.startIndex,
-        oversizedUnit.endIndex,
+        oversizedStartOffset,
+        oversizedEndOffset,
         baseStartLine,
       );
       const oversizedChunks = characterChunk(
-        content.slice(oversizedUnit.startIndex, oversizedUnit.endIndex),
+        content.slice(oversizedStartOffset, oversizedEndOffset),
         oversizedLineRange.startLine,
         oversizedLineRange.endLine,
         chunkSize,
@@ -252,8 +275,8 @@ const chunkByUnits = (
       ).map((chunk, offsetIdx) => ({
         ...chunk,
         chunkIndex: chunks.length + offsetIdx,
-        startOffset: chunk.startOffset + oversizedUnit.startIndex,
-        endOffset: chunk.endOffset + oversizedUnit.startIndex,
+        startOffset: chunk.startOffset + oversizedStartOffset,
+        endOffset: chunk.endOffset + oversizedStartOffset,
       }));
       chunks.push(...oversizedChunks);
       chunkStartUnitIdx += 1;
@@ -325,7 +348,7 @@ const getDeclarationBodyNode = (node: any): any | null => {
 
 const collectDeclarationUnits = (
   bodyNode: any,
-  label: 'Class' | 'Interface',
+  groupFields: boolean,
 ): Array<{ startIndex: number; endIndex: number }> => {
   const members: Array<{ startIndex: number; endIndex: number; groupable: boolean }> = [];
 
@@ -335,7 +358,7 @@ const collectDeclarationUnits = (
     members.push({
       startIndex: child.startIndex,
       endIndex: child.endIndex,
-      groupable: label === 'Class' && FIELD_LIKE_MEMBER_TYPES.has(child.type),
+      groupable: groupFields && FIELD_LIKE_MEMBER_TYPES.has(child.type),
     });
   }
 

gitnexus/src/core/embeddings/embedding-pipeline.ts

@@ -30,6 +30,7 @@ import {
   DEFAULT_EMBEDDING_CONFIG,
   EMBEDDABLE_LABELS,
   isShortLabel,
+  LABEL_METHOD,
   LABELS_WITH_EXPORTED,
   STRUCTURAL_LABELS,
   collectBestChunks,
@@ -43,6 +44,12 @@ import {
 import { loadVectorExtension } from '../lbug/lbug-adapter.js';
 
 const isDev = process.env.NODE_ENV === 'development';
+/**
+ * Bump this when the embedding text template changes in a way that should
+ * invalidate existing vectors, such as metadata/header shape changes,
+ * structural container context changes, or preceding-context formatting rules.
+ */
+export const EMBEDDING_TEXT_VERSION = 'v2';
 
 /**
  * Compute a stable content fingerprint for an embeddable node.
@@ -57,12 +64,13 @@ export const contentHashForNode = (
   // Hash must be deterministic across runs, so exclude methodNames/fieldNames
   // which are populated during the batch loop via AST extraction.
   // Using only node.content ensures the hash stays stable.
+  // NOTE: A change to extractStructuralNames behavior requires bumping EMBEDDING_TEXT_VERSION.
   const text = generateEmbeddingText(
     { ...node, methodNames: undefined, fieldNames: undefined },
     node.content,
     config,
   );
-  return createHash('sha1').update(text).digest('hex');
+  return createHash('sha1').update(EMBEDDING_TEXT_VERSION).update('\n').update(text).digest('hex');
 };
 
 /**
@@ -83,7 +91,7 @@ const queryEmbeddableNodes = async (
     try {
       let query: string;
 
-      if (label === 'Method') {
+      if (label === LABEL_METHOD) {
         // Method has parameterCount and returnType
         query = `
           MATCH (n:Method)
@@ -115,7 +123,7 @@ const queryEmbeddableNodes = async (
 
       const rows = await executeQuery(query);
       for (const row of rows) {
-        const hasExportedColumn = label === 'Method' || LABELS_WITH_EXPORTED.has(label);
+        const hasExportedColumn = label === LABEL_METHOD || LABELS_WITH_EXPORTED.has(label);
         allNodes.push({
           id: row.id ?? row[0],
           name: row.name ?? row[1],
@@ -126,7 +134,7 @@ const queryEmbeddableNodes = async (
           endLine: row.endLine ?? row[6],
           isExported: hasExportedColumn ? (row.isExported ?? row[7]) : undefined,
           description: row.description ?? (hasExportedColumn ? row[8] : row[7]),
-          ...(label === 'Method'
+          ...(label === LABEL_METHOD
             ? {
                 parameterCount: row.parameterCount ?? row[9],
                 returnType: row.returnType ?? row[10],
@@ -415,8 +423,15 @@ export const runEmbeddingPipeline = async (
           }
         }
 
+        let prevTail = '';
         for (const chunk of chunks) {
-          const text = generateEmbeddingText(node, chunk.text, finalConfig);
+          const text = generateEmbeddingText(
+            node,
+            chunk.text,
+            finalConfig,
+            chunk.chunkIndex,
+            prevTail,
+          );
           allTexts.push(text);
           allUpdates.push({
             nodeId: node.id,
@@ -425,6 +440,7 @@ export const runEmbeddingPipeline = async (
             endLine: chunk.endLine,
             contentHash: hash,
           });
+          prevTail = overlap > 0 ? chunk.text.slice(-overlap) : '';
         }
       }
 

gitnexus/src/core/embeddings/text-generator.ts

@@ -10,7 +10,12 @@
  */
 
 import type { EmbeddableNode, EmbeddingConfig } from './types.js';
-import { DEFAULT_EMBEDDING_CONFIG, isShortLabel } from './types.js';
+import {
+  CHUNKING_RULES,
+  DEFAULT_EMBEDDING_CONFIG,
+  STRUCTURAL_TEXT_MODE_DECLARATION,
+  isShortLabel,
+} from './types.js';
 
 /**
  * Truncate description to max length at sentence/word boundary
@@ -95,47 +100,62 @@ const generateCodeBodyText = (
   node: EmbeddableNode,
   codeBody: string,
   config: Partial<EmbeddingConfig>,
+  prevTail?: string,
 ): string => {
   const header = buildMetadataHeader(node, config);
-  const cleaned = cleanContent(codeBody);
-  return `${header}\n\n${cleaned}`;
+  const parts = [header];
+  if (prevTail) {
+    parts.push(`[preceding context]: ...${cleanContent(prevTail)}`);
+  }
+  parts.push('', cleanContent(codeBody));
+  return parts.join('\n');
 };
 
-/**
- * Generate embedding text for Class nodes
- * Signature + properties + method name list only (no method bodies)
- * Method/field names come from AST extractors via node.methodNames/node.fieldNames.
- */
-const generateClassText = (
-  node: EmbeddableNode,
-  codeBody: string,
-  config: Partial<EmbeddingConfig>,
-): string => {
-  return generateStructuralTypeText(node, codeBody, config);
+const getCompactContainerContext = (
+  cleanedContent: string,
+  declarationOnly: string,
+): string | undefined => {
+  const source = declarationOnly || cleanedContent;
+  const nlIdx = source.indexOf('\n');
+  const firstLine = (nlIdx === -1 ? source : source.substring(0, nlIdx)).trim();
+  return firstLine ? `Container: ${firstLine}` : undefined;
 };
 
 const generateStructuralTypeText = (
   node: EmbeddableNode,
   codeBody: string,
   config: Partial<EmbeddingConfig>,
+  chunkIndex?: number,
+  prevTail?: string,
 ): string => {
   const header = buildMetadataHeader(node, config);
   const parts: string[] = [header];
+  const isFirstChunk = chunkIndex === undefined || chunkIndex === 0;
+  const cleanedContent = cleanContent(node.content);
+  const declarationOnly = extractDeclarationOnly(cleanedContent);
+  const compactContainerContext = getCompactContainerContext(cleanedContent, declarationOnly);
 
-  if (node.methodNames?.length) {
+  if (compactContainerContext) {
+    parts.push(compactContainerContext);
+  }
+
+  if (prevTail) {
+    parts.push(`[preceding context]: ...${cleanContent(prevTail)}`);
+  }
+
+  if (isFirstChunk && node.methodNames?.length) {
     parts.push(`Methods: ${node.methodNames.join(', ')}`);
   }
-  if (node.fieldNames?.length) {
+  if (isFirstChunk && node.fieldNames?.length) {
     parts.push(`Properties: ${node.fieldNames.join(', ')}`);
   }
 
-  const declarationOnly = extractDeclarationOnly(cleanContent(node.content));
-  if (declarationOnly) {
+  if (isFirstChunk && declarationOnly) {
     parts.push('', declarationOnly);
   }
 
   const cleanedChunk = cleanContent(codeBody);
-  if (cleanedChunk && cleanedChunk !== cleanContent(node.content)) {
+  if (cleanedChunk && cleanedChunk !== cleanedContent) {
     parts.push('', cleanedChunk);
   }
 
@@ -229,6 +249,8 @@ export const generateEmbeddingText = (
   node: EmbeddableNode,
   codeBody: string,
   config: Partial<EmbeddingConfig> = {},
+  chunkIndex?: number,
+  prevTail?: string,
 ): string => {
   if (isShortLabel(node.label)) {
     const header = buildMetadataHeader(node, config);
@@ -236,15 +258,12 @@ export const generateEmbeddingText = (
     return `${header}\n\n${cleaned}`;
   }
 
-  if (node.label === 'Class') {
-    return generateClassText(node, codeBody, config);
+  const chunkingRule = CHUNKING_RULES[node.label];
+  if (chunkingRule?.structuralTextMode === STRUCTURAL_TEXT_MODE_DECLARATION) {
+    return generateStructuralTypeText(node, codeBody, config, chunkIndex, prevTail);
   }
 
-  if (node.label === 'Interface') {
-    return generateStructuralTypeText(node, codeBody, config);
-  }
-
-  return generateCodeBodyText(node, codeBody, config);
+  return generateCodeBodyText(node, codeBody, config, prevTail);
 };
 
 /**

gitnexus/src/core/embeddings/types.ts

@@ -4,35 +4,76 @@
  * Type definitions for the embedding generation and semantic search system.
  */
 
+export const LABEL_FUNCTION = 'Function' as const;
+export const LABEL_METHOD = 'Method' as const;
+export const LABEL_CONSTRUCTOR = 'Constructor' as const;
+export const LABEL_CLASS = 'Class' as const;
+export const LABEL_INTERFACE = 'Interface' as const;
+export const LABEL_STRUCT = 'Struct' as const;
+export const LABEL_ENUM = 'Enum' as const;
+export const LABEL_TRAIT = 'Trait' as const;
+export const LABEL_IMPL = 'Impl' as const;
+export const LABEL_MACRO = 'Macro' as const;
+export const LABEL_NAMESPACE = 'Namespace' as const;
+export const LABEL_TYPE_ALIAS = 'TypeAlias' as const;
+export const LABEL_TYPEDEF = 'Typedef' as const;
+export const LABEL_CONST = 'Const' as const;
+export const LABEL_PROPERTY = 'Property' as const;
+export const LABEL_RECORD = 'Record' as const;
+export const LABEL_UNION = 'Union' as const;
+export const LABEL_STATIC = 'Static' as const;
+export const LABEL_VARIABLE = 'Variable' as const;
+export const LABEL_CODE_ELEMENT = 'CodeElement' as const;
+
+export const CHUNK_MODE_AST_FUNCTION = 'ast-function' as const;
+export const CHUNK_MODE_AST_DECLARATION = 'ast-declaration' as const;
+// CHUNK_MODE_CHARACTER exists for type completeness but is a no-op in CHUNKING_RULES —
+// omit the entry entirely to get character fallback via chunker.ts dispatch.
+export const CHUNK_MODE_CHARACTER = 'character' as const;
+
+export const STRUCTURAL_TEXT_MODE_NONE = 'none' as const;
+export const STRUCTURAL_TEXT_MODE_DECLARATION = 'declaration' as const;
+
+export interface ChunkingRule {
+  mode:
+    | typeof CHUNK_MODE_AST_FUNCTION
+    | typeof CHUNK_MODE_AST_DECLARATION
+    | typeof CHUNK_MODE_CHARACTER;
+  includePrefix: boolean;
+  includeSuffix: boolean;
+  groupFields: boolean;
+  structuralTextMode: typeof STRUCTURAL_TEXT_MODE_NONE | typeof STRUCTURAL_TEXT_MODE_DECLARATION;
+}
+
 /**
  * Node labels that need chunking (have code body, potentially long)
  */
 export const CHUNKABLE_LABELS = [
-  'Function',
-  'Method',
-  'Constructor',
-  'Class',
-  'Interface',
-  'Struct',
-  'Enum',
-  'Trait',
-  'Impl',
-  'Macro',
-  'Namespace',
+  LABEL_FUNCTION,
+  LABEL_METHOD,
+  LABEL_CONSTRUCTOR,
+  LABEL_CLASS,
+  LABEL_INTERFACE,
+  LABEL_STRUCT,
+  LABEL_ENUM,
+  LABEL_TRAIT,
+  LABEL_IMPL,
+  LABEL_MACRO,
+  LABEL_NAMESPACE,
 ] as const;
 
 /**
  * Node labels that are short (no chunking needed, embed directly)
  */
 export const SHORT_LABELS = [
-  'TypeAlias',
-  'Typedef',
-  'Const',
-  'Property',
-  'Record',
-  'Union',
-  'Static',
-  'Variable',
+  LABEL_TYPE_ALIAS,
+  LABEL_TYPEDEF,
+  LABEL_CONST,
+  LABEL_PROPERTY,
+  LABEL_RECORD,
+  LABEL_UNION,
+  LABEL_STATIC,
+  LABEL_VARIABLE,
 ] as const;
 
 /**
@@ -61,26 +102,78 @@ export const isShortLabel = (label: string): boolean =>
   (SHORT_LABELS as readonly string[]).includes(label);
 
 /**
- * Node labels that have structural names (methods/fields) extractable via AST
+ * Node labels that have structural names (methods/fields) extractable via AST.
+ * Only labels that consume methodNames/fieldNames in their embedding text should
+ * be listed here — extra entries trigger wasted AST parses with no effect on output.
  */
 export const STRUCTURAL_LABELS: ReadonlySet<string> = new Set([
-  'Class',
-  'Struct',
-  'Interface',
-  'Enum',
+  LABEL_CLASS,
+  LABEL_STRUCT,
+  LABEL_INTERFACE,
 ]);
 
 /**
  * Node labels that have isExported column in their schema
  */
 export const LABELS_WITH_EXPORTED = new Set([
-  'Function',
-  'Class',
-  'Interface',
-  'Method',
-  'CodeElement',
+  LABEL_FUNCTION,
+  LABEL_CLASS,
+  LABEL_INTERFACE,
+  LABEL_METHOD,
+  LABEL_CODE_ELEMENT,
 ]) as ReadonlySet<string>;
 
+/**
+ * Labels that need special chunking and/or structural text semantics.
+ * Any chunkable label omitted here intentionally falls back to characterChunk
+ * plus generateCodeBodyText (for example Enum/Trait/Impl/Macro/Namespace).
+ */
+type ChunkableLabel = (typeof CHUNKABLE_LABELS)[number];
+export const CHUNKING_RULES: Readonly<Partial<Record<ChunkableLabel, ChunkingRule>>> = {
+  [LABEL_FUNCTION]: {
+    mode: CHUNK_MODE_AST_FUNCTION,
+    includePrefix: true,
+    includeSuffix: true,
+    groupFields: false,
+    structuralTextMode: STRUCTURAL_TEXT_MODE_NONE,
+  },
+  [LABEL_METHOD]: {
+    mode: CHUNK_MODE_AST_FUNCTION,
+    includePrefix: true,
+    includeSuffix: true,
+    groupFields: false,
+    structuralTextMode: STRUCTURAL_TEXT_MODE_NONE,
+  },
+  [LABEL_CONSTRUCTOR]: {
+    mode: CHUNK_MODE_AST_FUNCTION,
+    includePrefix: true,
+    includeSuffix: true,
+    groupFields: false,
+    structuralTextMode: STRUCTURAL_TEXT_MODE_NONE,
+  },
+  [LABEL_CLASS]: {
+    mode: CHUNK_MODE_AST_DECLARATION,
+    includePrefix: true,
+    includeSuffix: false,
+    groupFields: true,
+    structuralTextMode: STRUCTURAL_TEXT_MODE_DECLARATION,
+  },
+  [LABEL_INTERFACE]: {
+    mode: CHUNK_MODE_AST_DECLARATION,
+    includePrefix: true,
+    includeSuffix: false,
+    groupFields: false,
+    structuralTextMode: STRUCTURAL_TEXT_MODE_DECLARATION,
+  },
+  [LABEL_STRUCT]: {
+    mode: CHUNK_MODE_AST_DECLARATION,
+    includePrefix: true,
+    includeSuffix: false,
+    groupFields: true,
+    structuralTextMode: STRUCTURAL_TEXT_MODE_DECLARATION,
+  },
+};
+
 /**
  * Embedding pipeline phases
  */

gitnexus/src/core/git-staleness.ts

@@ -4,6 +4,9 @@
  */
 
 import { execFileSync } from 'node:child_process';
+import path from 'path';
+import { readRegistry, type RegistryEntry, type CwdMatch } from '../storage/repo-manager.js';
+import { getGitRoot, getCurrentCommit, getRemoteUrl } from '../storage/git.js';
 
 export interface StalenessInfo {
   isStale: boolean;
@@ -37,3 +40,111 @@ export function checkStaleness(repoPath: string, lastCommit: string): StalenessI
     return { isStale: false, commitsBehind: 0 };
   }
 }
+
+/**
+ * Compare a sibling-clone HEAD against an indexed `lastCommit`. Returns
+ * `undefined` when the indexed commit is not reachable from the sibling
+ * (e.g. divergent branches, shallow clone, missing ref). The caller
+ * should treat `undefined` as "drift unknown" rather than "no drift".
+ */
+function commitsAheadOfIndexed(siblingPath: string, indexedCommit: string): number | undefined {
+  if (!indexedCommit) return undefined;
+  try {
+    const result = execFileSync('git', ['rev-list', '--count', `${indexedCommit}..HEAD`], {
+      cwd: siblingPath,
+      encoding: 'utf-8',
+      stdio: ['pipe', 'pipe', 'pipe'],
+    }).trim();
+    return parseInt(result, 10) || 0;
+  } catch {
+    return undefined;
+  }
+}
+
+/**
+ * Resolve a working directory against the global registry. Returns:
+ *   - `match: 'path'`              when `cwd` is inside a registered entry's path
+ *   - `match: 'sibling-by-remote'` when `cwd` lives in a different on-disk clone
+ *                                   of the same repo (same `remoteUrl`)
+ *   - `match: 'none'`              when neither match applies
+ *
+ * For sibling-by-remote matches, the caller's HEAD and the drift vs the
+ * indexed `lastCommit` are also returned so the MCP layer can warn
+ * before serving silently-stale answers (issue: silent graph drift
+ * across sibling clones).
+ *
+ * `path` matches deliberately use the longest-prefix rule so a cwd
+ * inside a sub-path of a registered repo still matches that repo, not
+ * a coincidentally-aliased shorter entry.
+ */
+export async function checkCwdMatch(cwd: string): Promise<CwdMatch> {
+  const entries = await readRegistry();
+  if (entries.length === 0) return { match: 'none' };
+
+  const isWin = process.platform === 'win32';
+  const norm = (p: string) => (isWin ? path.resolve(p).toLowerCase() : path.resolve(p));
+  const sep = path.sep;
+  const cwdResolved = path.resolve(cwd);
+  const cwdNorm = norm(cwdResolved);
+
+  // 1) Path-based match (longest prefix wins, boundary-safe).
+  let bestPath: RegistryEntry | undefined;
+  let bestLen = -1;
+  for (const e of entries) {
+    const p = norm(e.path);
+    if (cwdNorm === p || cwdNorm.startsWith(p + sep)) {
+      if (p.length > bestLen) {
+        bestPath = e;
+        bestLen = p.length;
+      }
+    }
+  }
+  if (bestPath) return { match: 'path', entry: bestPath };
+
+  // 2) Sibling-by-remote: locate the cwd's git root, get its remote
+  //    URL, and look for any registered entry with the same fingerprint.
+  const cwdGitRoot = getGitRoot(cwdResolved);
+  if (!cwdGitRoot) return { match: 'none' };
+
+  const cwdRemote = getRemoteUrl(cwdGitRoot);
+  if (!cwdRemote) return { match: 'none' };
+
+  const sibling = entries.find(
+    (e) => e.remoteUrl === cwdRemote && norm(e.path) !== norm(cwdGitRoot),
+  );
+  if (!sibling) return { match: 'none' };
+
+  const cwdHead = getCurrentCommit(cwdGitRoot) || undefined;
+  const drift = commitsAheadOfIndexed(cwdGitRoot, sibling.lastCommit);
+
+  // Same commit on both clones → still report match=sibling-by-remote
+  // (the relationship is real and useful to callers like list_repos /
+  // future tooling) but leave `hint` unset: there's nothing to warn
+  // about, and `maybeWarnSiblingDrift` already short-circuits this
+  // case independently. Surfacing a no-op hint would force callers
+  // to second-guess whether they need to display it.
+  let hint: string | undefined;
+  if (cwdHead && cwdHead === sibling.lastCommit) {
+    hint = undefined;
+  } else if (drift && drift > 0) {
+    hint =
+      `⚠️ Index for "${sibling.name}" was built at ${sibling.path}; ` +
+      `your cwd (${cwdGitRoot}) is a sibling clone that is ${drift} commit${drift > 1 ? 's' : ''} ` +
+      `ahead of the indexed commit. Results may be stale or incorrect — re-run \`gitnexus analyze\` ` +
+      `to refresh the index.`;
+  } else {
+    hint =
+      `⚠️ Index for "${sibling.name}" was built at ${sibling.path}; ` +
+      `your cwd (${cwdGitRoot}) is a sibling clone whose HEAD differs from the indexed commit. ` +
+      `Results may be stale or incorrect — re-run \`gitnexus analyze\` to refresh the index.`;
+  }
+
+  return {
+    match: 'sibling-by-remote',
+    entry: sibling,
+    cwdGitRoot,
+    cwdHead,
+    drift,
+    hint,
+  };
+}

gitnexus/src/core/graph/graph.ts

@@ -1,35 +1,117 @@
-import type { GraphNode, GraphRelationship } from 'gitnexus-shared';
+import type { GraphNode, GraphRelationship, RelationshipType } from 'gitnexus-shared';
 import { KnowledgeGraph } from './types.js';
 
+/** Fresh empty iterator per call — `[].values()` returns a new
+ *  exhausted iterator each invocation, so empty-type lookups don't
+ *  share a single already-exhausted iterator across callers. */
+function emptyRelIter(): IterableIterator<GraphRelationship> {
+  return ([] as GraphRelationship[]).values();
+}
+
 export const createKnowledgeGraph = (): KnowledgeGraph => {
   const nodeMap = new Map<string, GraphNode>();
   const relationshipMap = new Map<string, GraphRelationship>();
+  // Per-type index maintained alongside `relationshipMap`. Bucket
+  // values are `Map<id, Relationship>` so per-type iteration is cheap
+  // and per-edge removal is O(1). See plan
+  // docs/plans/2026-04-20-002-perf-parse-heritage-mro-plan.md (Unit 1).
+  const relationshipsByType = new Map<RelationshipType, Map<string, GraphRelationship>>();
+  // Reverse-adjacency index: nodeId → Set<relId> of every edge where
+  // this node appears as source OR target. Maintained on writeRel /
+  // deleteRel so `removeNode` can delete a node's edges in
+  // O(edges-touching-node) instead of O(total-edges).
+  const edgeIdsByNode = new Map<string, Set<string>>();
+  // File index: filePath → Set<nodeId>. Maintained on addNode /
+  // removeNode so `removeNodesByFile` reaches its file's nodes
+  // directly instead of scanning the whole node map.
+  const nodeIdsByFile = new Map<string, Set<string>>();
+
+  // Private helpers that encode the dual-index invariants in one
+  // place. All mutation paths go through these — adding a new
+  // mutation method only needs to call the helper, not remember to
+  // touch every index.
+  const addToBucket = <K, V>(map: Map<K, Set<V>>, key: K, value: V): void => {
+    let bucket = map.get(key);
+    if (bucket === undefined) {
+      bucket = new Set();
+      map.set(key, bucket);
+    }
+    bucket.add(value);
+  };
+  const removeFromBucket = <K, V>(map: Map<K, Set<V>>, key: K, value: V): void => {
+    const bucket = map.get(key);
+    if (bucket === undefined) return;
+    bucket.delete(value);
+    if (bucket.size === 0) map.delete(key);
+  };
+
+  const writeRel = (rel: GraphRelationship): void => {
+    relationshipMap.set(rel.id, rel);
+    let typeBucket = relationshipsByType.get(rel.type);
+    if (typeBucket === undefined) {
+      typeBucket = new Map();
+      relationshipsByType.set(rel.type, typeBucket);
+    }
+    typeBucket.set(rel.id, rel);
+    addToBucket(edgeIdsByNode, rel.sourceId, rel.id);
+    // Guard against a self-edge writing the same rel.id into the
+    // same Set twice — Set dedup handles it, but we skip explicitly
+    // for clarity.
+    if (rel.targetId !== rel.sourceId) {
+      addToBucket(edgeIdsByNode, rel.targetId, rel.id);
+    }
+  };
+  const deleteRel = (rel: GraphRelationship): void => {
+    relationshipMap.delete(rel.id);
+    const typeBucket = relationshipsByType.get(rel.type);
+    if (typeBucket !== undefined) {
+      typeBucket.delete(rel.id);
+      if (typeBucket.size === 0) relationshipsByType.delete(rel.type);
+    }
+    removeFromBucket(edgeIdsByNode, rel.sourceId, rel.id);
+    if (rel.targetId !== rel.sourceId) {
+      removeFromBucket(edgeIdsByNode, rel.targetId, rel.id);
+    }
+  };
 
   const addNode = (node: GraphNode) => {
-    if (!nodeMap.has(node.id)) {
-      nodeMap.set(node.id, node);
+    if (nodeMap.has(node.id)) return;
+    nodeMap.set(node.id, node);
+    const filePath = node.properties?.filePath;
+    if (typeof filePath === 'string' && filePath.length > 0) {
+      addToBucket(nodeIdsByFile, filePath, node.id);
     }
   };
 
   const addRelationship = (relationship: GraphRelationship) => {
-    if (!relationshipMap.has(relationship.id)) {
-      relationshipMap.set(relationship.id, relationship);
-    }
+    if (relationshipMap.has(relationship.id)) return;
+    writeRel(relationship);
   };
 
   /**
-   * Remove a single node and all relationships involving it
+   * Remove a single node and all relationships involving it.
+   * O(edges-touching-node) via the reverse-adjacency index — no full
+   * relationshipMap scan.
    */
   const removeNode = (nodeId: string): boolean => {
-    if (!nodeMap.has(nodeId)) return false;
+    const node = nodeMap.get(nodeId);
+    if (node === undefined) return false;
 
     nodeMap.delete(nodeId);
+    const filePath = node.properties?.filePath;
+    if (typeof filePath === 'string' && filePath.length > 0) {
+      removeFromBucket(nodeIdsByFile, filePath, nodeId);
+    }
 
-    // Remove all relationships involving this node
-    for (const [relId, rel] of relationshipMap) {
-      if (rel.sourceId === nodeId || rel.targetId === nodeId) {
-        relationshipMap.delete(relId);
+    const touchingEdgeIds = edgeIdsByNode.get(nodeId);
+    if (touchingEdgeIds !== undefined) {
+      // Snapshot the ids before iterating — deleteRel mutates the same
+      // Set via removeFromBucket, which would break mid-loop iteration.
+      for (const relId of [...touchingEdgeIds]) {
+        const rel = relationshipMap.get(relId);
+        if (rel !== undefined) deleteRel(rel);
       }
+      edgeIdsByNode.delete(nodeId);
     }
     return true;
   };
@@ -39,21 +121,24 @@ export const createKnowledgeGraph = (): KnowledgeGraph => {
    * Returns true if the relationship existed and was removed, false otherwise.
    */
   const removeRelationship = (relationshipId: string): boolean => {
-    return relationshipMap.delete(relationshipId);
+    const rel = relationshipMap.get(relationshipId);
+    if (rel === undefined) return false;
+    deleteRel(rel);
+    return true;
   };
 
   /**
    * Remove all nodes (and their relationships) belonging to a file.
+   * O(file-nodes × avg-edges-per-node) via the file index — no full
+   * node-map scan.
    */
   const removeNodesByFile = (filePath: string): number => {
-    let removed = 0;
-    for (const [nodeId, node] of nodeMap) {
-      if (node.properties?.filePath === filePath) {
-        removeNode(nodeId);
-        removed++;
-      }
-    }
-    return removed;
+    const nodeIds = nodeIdsByFile.get(filePath);
+    if (nodeIds === undefined) return 0;
+    // Snapshot before iterating — removeNode mutates nodeIdsByFile.
+    const snapshot = [...nodeIds];
+    for (const nodeId of snapshot) removeNode(nodeId);
+    return snapshot.length;
   };
 
   return {
@@ -67,6 +152,10 @@ export const createKnowledgeGraph = (): KnowledgeGraph => {
 
     iterNodes: () => nodeMap.values(),
     iterRelationships: () => relationshipMap.values(),
+    iterRelationshipsByType: (type: RelationshipType) => {
+      const bucket = relationshipsByType.get(type);
+      return bucket === undefined ? emptyRelIter() : bucket.values();
+    },
     forEachNode(fn: (node: GraphNode) => void) {
       nodeMap.forEach(fn);
     },

gitnexus/src/core/graph/types.ts

@@ -6,7 +6,7 @@
  *
  * This file only defines the CLI's KnowledgeGraph with mutation methods.
  */
-import type { GraphNode, GraphRelationship } from 'gitnexus-shared';
+import type { GraphNode, GraphRelationship, RelationshipType } from 'gitnexus-shared';
 
 // CLI-specific: full KnowledgeGraph with mutation methods for incremental updates
 export interface KnowledgeGraph {
@@ -14,6 +14,17 @@ export interface KnowledgeGraph {
   relationships: GraphRelationship[];
   iterNodes: () => IterableIterator<GraphNode>;
   iterRelationships: () => IterableIterator<GraphRelationship>;
+  /**
+   * Iterate ONLY relationships of the given type, backed by a per-type
+   * index maintained in `addRelationship` / `removeRelationship` /
+   * `removeNode` / `removeNodesByFile`. Returns an empty iterator when
+   * the graph contains no relationships of that type.
+   *
+   * Prefer this over `iterRelationships()` + per-edge type filtering
+   * for hot paths (MRO setup, heritage walks). Backwards-compatible:
+   * existing `iterRelationships()` callers keep working.
+   */
+  iterRelationshipsByType: (type: RelationshipType) => IterableIterator<GraphRelationship>;
   forEachNode: (fn: (node: GraphNode) => void) => void;
   forEachRelationship: (fn: (rel: GraphRelationship) => void) => void;
   getNode: (id: string) => GraphNode | undefined;

gitnexus/src/core/group/config-parser.ts

@@ -89,10 +89,25 @@ export function parseGroupConfig(yamlContent: string): GroupConfig {
   };
 }
 
+export class GroupNotFoundError extends Error {
+  constructor(public readonly groupName: string) {
+    super(`Group "${groupName}" not found`);
+    this.name = 'GroupNotFoundError';
+  }
+}
+
 export async function loadGroupConfig(groupDir: string): Promise<GroupConfig> {
   const fsp = await import('node:fs/promises');
   const path = await import('node:path');
   const yamlPath = path.join(groupDir, 'group.yaml');
-  const content = await fsp.readFile(yamlPath, 'utf-8');
+  let content: string;
+  try {
+    content = await fsp.readFile(yamlPath, 'utf-8');
+  } catch (err) {
+    if ((err as NodeJS.ErrnoException).code === 'ENOENT') {
+      throw new GroupNotFoundError(path.basename(groupDir));
+    }
+    throw err;
+  }
   return parseGroupConfig(content);
 }

gitnexus/src/core/group/cross-impact.ts

@@ -0,0 +1,549 @@
+/**
+ * Cross-repo impact (Phase 1 local walk + Phase 2 bridge fan-out).
+ * All bridge Cypher for this feature lives in this module.
+ */
+
+import fsp from 'node:fs/promises';
+import path from 'node:path';
+import type {
+  BridgeHandle,
+  ContractType,
+  CrossRepoImpact,
+  GroupConfig,
+  GroupImpactResult,
+  MatchType,
+  OutOfScopeLink,
+} from './types.js';
+import type { GroupRepoHandle, GroupToolPort } from './service.js';
+import { GroupNotFoundError, loadGroupConfig } from './config-parser.js';
+import {
+  fileMatchesServicePrefix,
+  normalizeServicePrefix,
+  repoInSubgroup,
+} from './group-path-utils.js';
+import { getGroupDir } from './storage.js';
+import { closeBridgeDb, openBridgeDbReadOnly, queryBridge, readBridgeMeta } from './bridge-db.js';
+import { BRIDGE_SCHEMA_VERSION } from './bridge-schema.js';
+
+/** Cross-boundary hops beyond this value are clamped (multi-hop reserved for future work). */
+export const MAX_SUPPORTED_CROSS_DEPTH = 1;
+
+/** Default wall-clock budget for the Phase 1 `impact` leg when callers omit `timeoutMs`. */
+export const DEFAULT_LOCAL_IMPACT_TIMEOUT_MS = 30_000;
+
+const CY_NEIGHBORS_UPSTREAM = `
+MATCH (consumer:Contract)-[l:ContractLink]->(provider:Contract)
+WHERE provider.repo = $localRepo
+  AND provider.symbolUid IN $uids
+  AND provider.role = 'provider'
+RETURN consumer.repo AS neighborRepo,
+       consumer.symbolUid AS neighborUid,
+       consumer.filePath AS neighborFilePath,
+       l.matchType AS matchType,
+       l.confidence AS confidence,
+       l.contractId AS contractId,
+       consumer.type AS contractType
+`;
+
+const CY_NEIGHBORS_DOWNSTREAM = `
+MATCH (consumer:Contract)-[l:ContractLink]->(provider:Contract)
+WHERE consumer.repo = $localRepo
+  AND consumer.symbolUid IN $uids
+  AND consumer.role = 'consumer'
+RETURN provider.repo AS neighborRepo,
+       provider.symbolUid AS neighborUid,
+       provider.filePath AS neighborFilePath,
+       l.matchType AS matchType,
+       l.confidence AS confidence,
+       l.contractId AS contractId,
+       provider.type AS contractType
+`;
+
+type BridgeNeighborRow = {
+  neighborRepo: string;
+  neighborUid: string;
+  neighborFilePath?: string;
+  matchType: string;
+  confidence: number;
+  contractId: string;
+  contractType: string;
+};
+
+export interface RunGroupImpactDeps {
+  port: GroupToolPort;
+  gitnexusDir: string;
+}
+
+function parseDirection(raw: unknown): 'upstream' | 'downstream' | null {
+  if (raw === 'upstream' || raw === 'downstream') return raw;
+  return null;
+}
+
+function clampCrossDepth(raw: unknown): { depth: number; warning?: string } {
+  const n = typeof raw === 'number' && Number.isFinite(raw) ? Math.floor(raw) : 1;
+  const d = n < 1 ? 1 : n;
+  if (d > MAX_SUPPORTED_CROSS_DEPTH) {
+    return {
+      depth: MAX_SUPPORTED_CROSS_DEPTH,
+      warning: `crossDepth was ${d}; multi-hop cross-boundary traversal beyond ${MAX_SUPPORTED_CROSS_DEPTH} is not implemented yet. Using crossDepth ${MAX_SUPPORTED_CROSS_DEPTH}.`,
+    };
+  }
+  return { depth: d };
+}
+
+export function validateGroupImpactParams(params: Record<string, unknown>):
+  | {
+      ok: true;
+      name: string;
+      repoPath: string;
+      target: string;
+      direction: 'upstream' | 'downstream';
+      maxDepth: number;
+      crossDepth: number;
+      crossDepthWarning?: string;
+      relationTypes?: string[];
+      includeTests: boolean;
+      minConfidence: number;
+      service?: string;
+      subgroup?: string;
+      timeoutMs: number;
+    }
+  | { ok: false; error: string } {
+  const name = String(params.name ?? '').trim();
+  const repoPath = String(params.repo ?? '').trim();
+  const target = String(params.target ?? '').trim();
+  if (!name) return { ok: false, error: 'name is required' };
+  if (!repoPath)
+    return { ok: false, error: 'repo is required (group repo path, e.g. app/backend)' };
+  if (!target) return { ok: false, error: 'target is required' };
+  if (
+    params.service !== undefined &&
+    params.service !== null &&
+    String(params.service).trim() === ''
+  ) {
+    return { ok: false, error: 'service must not be an empty string' };
+  }
+  const direction = parseDirection(params.direction);
+  if (!direction) return { ok: false, error: 'direction must be upstream or downstream' };
+
+  let maxDepth = typeof params.maxDepth === 'number' && params.maxDepth > 0 ? params.maxDepth : 3;
+  if (maxDepth > 32) maxDepth = 32;
+
+  const { depth: crossDepth, warning: crossDepthWarning } = clampCrossDepth(params.crossDepth);
+
+  const relationTypes = Array.isArray(params.relationTypes)
+    ? params.relationTypes.filter((t): t is string => typeof t === 'string')
+    : undefined;
+
+  const includeTests = Boolean(params.includeTests);
+  let minConfidence = typeof params.minConfidence === 'number' ? params.minConfidence : 0;
+  if (minConfidence < 0) minConfidence = 0;
+  if (minConfidence > 1) minConfidence = 1;
+
+  const service = normalizeServicePrefix(params.service);
+  const subgroup = typeof params.subgroup === 'string' ? params.subgroup : undefined;
+
+  let timeoutMs =
+    typeof params.timeoutMs === 'number' && params.timeoutMs > 0
+      ? params.timeoutMs
+      : typeof params.timeout === 'number' && params.timeout > 0
+        ? params.timeout
+        : DEFAULT_LOCAL_IMPACT_TIMEOUT_MS;
+  if (timeoutMs > 3_600_000) timeoutMs = 3_600_000;
+
+  return {
+    ok: true,
+    name,
+    repoPath,
+    target,
+    direction,
+    maxDepth,
+    crossDepth,
+    crossDepthWarning,
+    relationTypes,
+    includeTests,
+    minConfidence,
+    service,
+    subgroup,
+    timeoutMs,
+  };
+}
+
+async function resolveGroupRepo(
+  port: GroupToolPort,
+  config: GroupConfig,
+  repoPath: string,
+): Promise<GroupRepoHandle | { error: string }> {
+  const registryName = config.repos[repoPath];
+  if (!registryName) {
+    return { error: `Unknown repo path "${repoPath}" in this group.` };
+  }
+  try {
+    return await port.resolveRepo(registryName);
+  } catch (e) {
+    return { error: e instanceof Error ? e.message : String(e) };
+  }
+}
+
+async function safeLocalImpact(
+  port: GroupToolPort,
+  repo: GroupRepoHandle,
+  impactParams: Parameters<GroupToolPort['impact']>[1],
+  timeoutMs: number,
+): Promise<{ value: unknown; timedOut: boolean }> {
+  let timer: ReturnType<typeof setTimeout> | undefined;
+  const impactP = port.impact(repo, impactParams).catch((err) => ({
+    error: err instanceof Error ? err.message : String(err),
+  }));
+  const timeoutP = new Promise<'timeout'>((resolve) => {
+    timer = setTimeout(() => resolve('timeout'), timeoutMs);
+  });
+  const won = await Promise.race([
+    impactP.then((v) => ({ tag: 'impact' as const, v })),
+    timeoutP.then(() => ({ tag: 'timeout' as const })),
+  ]);
+  if (timer !== undefined) clearTimeout(timer);
+  if (won.tag === 'timeout') {
+    return {
+      value: { error: 'Local impact timed out', partial: true },
+      timedOut: true,
+    };
+  }
+  return { value: won.v, timedOut: false };
+}
+
+export function collectImpactSymbolUids(
+  local: unknown,
+  servicePrefix: string | undefined,
+): { uids: string[]; targetFilePath?: string } {
+  const uids = new Set<string>();
+  let targetFilePath: string | undefined;
+  const obj = local as Record<string, unknown> | null;
+  if (!obj || typeof obj !== 'object') return { uids: [], targetFilePath };
+
+  const target = obj.target as { id?: string; filePath?: string } | undefined;
+  if (target?.id) {
+    targetFilePath = typeof target.filePath === 'string' ? target.filePath : undefined;
+    if (fileMatchesServicePrefix(targetFilePath, servicePrefix)) {
+      uids.add(String(target.id));
+    }
+  }
+
+  const byDepth = obj.byDepth as Record<string | number, unknown> | undefined;
+  if (byDepth && typeof byDepth === 'object') {
+    for (const items of Object.values(byDepth)) {
+      if (!Array.isArray(items)) continue;
+      for (const it of items) {
+        const row = it as { id?: string; filePath?: string };
+        if (row?.id && fileMatchesServicePrefix(row.filePath, servicePrefix)) {
+          uids.add(String(row.id));
+        }
+      }
+    }
+  }
+  return { uids: [...uids], targetFilePath };
+}
+
+function extractProcessNames(impact: unknown): string[] {
+  const o = impact as { affected_processes?: Array<{ name?: string }> };
+  if (!o?.affected_processes) return [];
+  return o.affected_processes.map((p) => String(p.name ?? '')).filter(Boolean);
+}
+
+function mergeRisk(localRisk: string, cross: CrossRepoImpact[]): string {
+  const highConf = cross.some((c) => c.contract.confidence >= 0.85);
+  if (localRisk === 'CRITICAL') return 'CRITICAL';
+  if (cross.length >= 3) return 'CRITICAL';
+  if (highConf) return 'HIGH';
+  if (cross.length > 0 && (localRisk === 'LOW' || localRisk === 'UNKNOWN')) return 'MEDIUM';
+  return localRisk;
+}
+
+async function ensureBridgeReady(
+  groupDir: string,
+): Promise<{ handle: BridgeHandle } | { error: string }> {
+  const meta = await readBridgeMeta(groupDir);
+  if (meta.version > 0 && meta.version !== BRIDGE_SCHEMA_VERSION) {
+    return {
+      error: `Bridge schema version mismatch (meta.json has ${meta.version}, expected ${BRIDGE_SCHEMA_VERSION}). Run gitnexus group sync for this group.`,
+    };
+  }
+  const dbPath = path.join(groupDir, 'bridge.lbug');
+  try {
+    await fsp.access(dbPath);
+  } catch {
+    return {
+      error: `No bridge.lbug in this group directory. Run gitnexus group sync (schema ${BRIDGE_SCHEMA_VERSION}).`,
+    };
+  }
+  const handle = await openBridgeDbReadOnly(groupDir);
+  if (!handle) {
+    return {
+      error: `Could not open bridge.lbug read-only (schema ${BRIDGE_SCHEMA_VERSION}). Run gitnexus group sync.`,
+    };
+  }
+  return { handle };
+}
+
+function rowToNeighbor(r: Record<string, unknown>): BridgeNeighborRow | null {
+  const neighborRepo = String(r.neighborRepo ?? r[0] ?? '');
+  const neighborUid = String(r.neighborUid ?? r[1] ?? '');
+  if (!neighborRepo || !neighborUid) return null;
+  return {
+    neighborRepo,
+    neighborUid,
+    neighborFilePath:
+      r.neighborFilePath !== undefined ? String(r.neighborFilePath) : String(r[2] ?? ''),
+    matchType: String(r.matchType ?? r[3] ?? 'exact'),
+    confidence: Number(r.confidence ?? r[4] ?? 0),
+    contractId: String(r.contractId ?? r[5] ?? ''),
+    contractType: String(r.contractType ?? r[6] ?? 'custom'),
+  };
+}
+
+export async function runGroupImpact(
+  deps: RunGroupImpactDeps,
+  params: Record<string, unknown>,
+): Promise<GroupImpactResult | { error: string }> {
+  const parsed = validateGroupImpactParams(params);
+  if (parsed.ok === false) return { error: parsed.error };
+
+  const {
+    name,
+    repoPath,
+    target,
+    direction,
+    maxDepth,
+    crossDepth: _crossDepth,
+    crossDepthWarning,
+    relationTypes,
+    includeTests,
+    minConfidence,
+    service: servicePrefix,
+    subgroup,
+    timeoutMs,
+  } = parsed;
+
+  const groupDir = getGroupDir(deps.gitnexusDir, name);
+  let config: GroupConfig;
+  try {
+    config = await loadGroupConfig(groupDir);
+  } catch (e) {
+    if (e instanceof GroupNotFoundError)
+      return { error: `Group "${name}" not found. Run group_list to see configured groups.` };
+    return { error: e instanceof Error ? e.message : String(e) };
+  }
+
+  const resolved = await resolveGroupRepo(deps.port, config, repoPath);
+  if ('error' in resolved) return { error: resolved.error };
+
+  const impactParams: Parameters<GroupToolPort['impact']>[1] = {
+    target,
+    direction,
+    maxDepth,
+    relationTypes: relationTypes && relationTypes.length > 0 ? relationTypes : undefined,
+    includeTests,
+    minConfidence,
+  };
+
+  const deadline = Date.now() + Math.max(0, timeoutMs);
+
+  const { value: local, timedOut: localTimedOut } = await safeLocalImpact(
+    deps.port,
+    resolved,
+    impactParams,
+    timeoutMs,
+  );
+
+  if (localTimedOut) {
+    const _base = local as Record<string, unknown>;
+    return {
+      local,
+      group: name,
+      cross: [],
+      outOfScope: [],
+      truncated: true,
+      truncatedRepos: [],
+      summary: {
+        direct: 0,
+        processes_affected: 0,
+        modules_affected: 0,
+        cross_repo_hits: 0,
+      },
+      risk: 'UNKNOWN',
+      timeoutMs,
+      truncationReason: 'timeout',
+      crossDepthWarning,
+    };
+  }
+
+  const localObj = local as Record<string, unknown> | null;
+  if (localObj?.error && typeof localObj.error === 'string') {
+    // Fail closed: the local-impact phase errored (missing symbol, graph-load
+    // failure, thrown exception wrapped by safeLocalImpact, or port-returned
+    // `{ error }`). Do NOT wrap it into a zero-hit success payload — callers
+    // branch on top-level `error`, and a blast-radius tool reporting "no
+    // impact" on the failure path is a false negative on a safety-critical
+    // signal. Bubble the error so consumers treat it as a failure.
+    return { error: `Local impact failed for ${repoPath}: ${localObj.error}` };
+  }
+
+  if (servicePrefix) {
+    const tf = (localObj?.target as { filePath?: string } | undefined)?.filePath;
+    if (!fileMatchesServicePrefix(tf, servicePrefix)) {
+      return {
+        local: {},
+        group: name,
+        cross: [],
+        outOfScope: [],
+        truncated: false,
+        truncatedRepos: [],
+        summary: {
+          direct: 0,
+          processes_affected: 0,
+          modules_affected: 0,
+          cross_repo_hits: 0,
+        },
+        risk: 'LOW',
+        timeoutMs,
+        crossDepthWarning,
+      };
+    }
+  }
+
+  const { uids } = collectImpactSymbolUids(local, servicePrefix);
+  if (uids.length === 0) {
+    const s = (local as { summary?: Record<string, number> })?.summary || {};
+    return {
+      local,
+      group: name,
+      cross: [],
+      outOfScope: [],
+      truncated: Boolean((local as { partial?: boolean }).partial),
+      truncatedRepos: [],
+      summary: {
+        direct: s.direct ?? 0,
+        processes_affected: s.processes_affected ?? 0,
+        modules_affected: s.modules_affected ?? 0,
+        cross_repo_hits: 0,
+      },
+      risk: String((local as { risk?: string }).risk ?? 'LOW'),
+      timeoutMs,
+      truncationReason: (local as { partial?: boolean }).partial ? 'partial' : undefined,
+      crossDepthWarning,
+    };
+  }
+
+  const bridgePrep = await ensureBridgeReady(groupDir);
+  if ('error' in bridgePrep) return { error: bridgePrep.error };
+
+  const handle = bridgePrep.handle;
+  const cross: CrossRepoImpact[] = [];
+  const outOfScope: OutOfScopeLink[] = [];
+  const truncatedRepos: string[] = [];
+
+  try {
+    const cypher = direction === 'upstream' ? CY_NEIGHBORS_UPSTREAM : CY_NEIGHBORS_DOWNSTREAM;
+    const rows = await queryBridge<Record<string, unknown>>(handle, cypher, {
+      localRepo: repoPath,
+      uids,
+    });
+
+    const neighbors: BridgeNeighborRow[] = [];
+    for (const raw of rows) {
+      const n = rowToNeighbor(raw);
+      if (n) neighbors.push(n);
+    }
+    neighbors.sort((a, b) => b.confidence - a.confidence);
+
+    const seen = new Set<string>();
+
+    for (const n of neighbors) {
+      if (servicePrefix && !fileMatchesServicePrefix(n.neighborFilePath, servicePrefix)) {
+        continue;
+      }
+      if (!repoInSubgroup(n.neighborRepo, subgroup)) {
+        outOfScope.push({
+          from: direction === 'upstream' ? n.neighborRepo : repoPath,
+          to: direction === 'upstream' ? repoPath : n.neighborRepo,
+          contractId: n.contractId,
+          confidence: n.confidence,
+        });
+        continue;
+      }
+
+      const key = `${n.neighborRepo}\0${n.neighborUid}\0${n.contractId}`;
+      if (seen.has(key)) continue;
+      seen.add(key);
+
+      if (Date.now() > deadline) {
+        truncatedRepos.push(n.neighborRepo);
+        continue;
+      }
+
+      const regName = config.repos[n.neighborRepo];
+      if (!regName) continue;
+
+      let neighborHandle: GroupRepoHandle;
+      try {
+        neighborHandle = await deps.port.resolveRepo(regName);
+      } catch {
+        truncatedRepos.push(n.neighborRepo);
+        continue;
+      }
+
+      const fan = await deps.port.impactByUid(neighborHandle.id, n.neighborUid, direction, {
+        maxDepth,
+        relationTypes: relationTypes ?? [],
+        minConfidence,
+        includeTests,
+      });
+      if (fan == null) {
+        truncatedRepos.push(n.neighborRepo);
+        continue;
+      }
+
+      cross.push({
+        repo: regName,
+        repo_path: n.neighborRepo,
+        contract: {
+          id: n.contractId,
+          type: n.contractType as ContractType,
+          match_type: (n.matchType as MatchType) || 'exact',
+          confidence: n.confidence,
+        },
+        by_depth: ((fan as { byDepth?: unknown }).byDepth ?? {}) as Record<string, unknown[]>,
+        affected_processes: extractProcessNames(fan),
+      });
+    }
+  } finally {
+    await closeBridgeDb(handle);
+  }
+
+  const localSum = (local as { summary?: Record<string, number> })?.summary || {};
+  const localRisk = String((local as { risk?: string }).risk ?? 'LOW');
+  const localPartial = Boolean((local as { partial?: boolean }).partial);
+  const truncated = truncatedRepos.length > 0 || localPartial;
+
+  const result: GroupImpactResult = {
+    local,
+    group: name,
+    cross,
+    outOfScope,
+    truncated,
+    truncatedRepos: [...new Set(truncatedRepos)],
+    summary: {
+      direct: localSum.direct ?? 0,
+      processes_affected: localSum.processes_affected ?? 0,
+      modules_affected: localSum.modules_affected ?? 0,
+      cross_repo_hits: cross.length,
+    },
+    risk: mergeRisk(localRisk, cross),
+    timeoutMs,
+    truncationReason: truncated ? 'partial' : undefined,
+    crossDepthWarning,
+  };
+  return result;
+}
+
+export { normalizeServicePrefix, fileMatchesServicePrefix } from './group-path-utils.js';

gitnexus/src/core/group/extractors/http-patterns/php.ts

@@ -3,33 +3,92 @@ import {
   compilePatterns,
   runCompiledPatterns,
   unquoteLiteral,
+  type CompiledPatterns,
   type LanguagePatterns,
+  type PatternSpec,
 } from '../tree-sitter-scanner.js';
 import type { HttpDetection, HttpLanguagePlugin } from './types.js';
 
 /**
- * PHP HTTP plugin — Laravel `Route::get/post/...` declarations.
+ * PHP HTTP plugin.
+ *
+ * Providers:
+ *   - Laravel `Route::get/post/...`
+ *
+ * Consumers (string-literal URLs only):
+ *   - Laravel HTTP client: `Http::get/post/put/delete/patch($url)`
+ *   - Guzzle / generic object method: `$client->get/post/...($url)`
+ *   - `file_get_contents($url)`
  *
  * The pipeline already uses `PHP.php_only` for ingesting plain `.php`
  * files (see `core/tree-sitter/parser-loader.ts`), and we do the same
  * here so Laravel route files are parsed with the right grammar dialect.
+ *
+ * Scope notes: consumer patterns match string literals only. URLs built
+ * via binary concatenation (`$base . '/path'`), `sprintf`, or config
+ * lookup (`config('services.foo.base').'/path'`) are intentionally left
+ * for a follow-up — they require constant-folding the surrounding
+ * scope to be meaningful.
  */
 
-const LARAVEL_PATTERNS = compilePatterns({
-  name: 'php-laravel',
-  language: PHP.php_only,
-  patterns: [
-    {
-      meta: {},
-      query: `
-        (scoped_call_expression
-          scope: (name) @scope (#eq? @scope "Route")
-          name: (name) @method (#match? @method "^(get|post|put|delete|patch)$")
-          arguments: (arguments . (argument (string) @path)))
-      `,
-    },
-  ],
-} satisfies LanguagePatterns<Record<string, never>>);
+const LARAVEL_ROUTE_SPEC: PatternSpec<Record<string, never>> = {
+  meta: {},
+  query: `
+    (scoped_call_expression
+      scope: (name) @scope (#eq? @scope "Route")
+      name: (name) @method (#match? @method "^(get|post|put|delete|patch)$")
+      arguments: (arguments . (argument (string) @path)))
+  `,
+};
+
+const HTTP_FACADE_SPEC: PatternSpec<Record<string, never>> = {
+  meta: {},
+  query: `
+    (scoped_call_expression
+      scope: (name) @scope (#eq? @scope "Http")
+      name: (name) @method (#match? @method "^(get|post|put|delete|patch)$")
+      arguments: (arguments . (argument (string) @path)))
+  `,
+};
+
+const GUZZLE_MEMBER_SPEC: PatternSpec<Record<string, never>> = {
+  meta: {},
+  query: `
+    (member_call_expression
+      name: (name) @method (#match? @method "^(get|post|put|delete|patch)$")
+      arguments: (arguments . (argument (string) @path)))
+  `,
+};
+
+const FILE_GET_CONTENTS_SPEC: PatternSpec<Record<string, never>> = {
+  meta: {},
+  query: `
+    (function_call_expression
+      function: (name) @fn (#eq? @fn "file_get_contents")
+      arguments: (arguments . (argument (string) @path)))
+  `,
+};
+
+interface PhpPatternBundle {
+  laravelRoute: CompiledPatterns<Record<string, never>>;
+  httpFacade: CompiledPatterns<Record<string, never>>;
+  guzzleMember: CompiledPatterns<Record<string, never>>;
+  fileGetContents: CompiledPatterns<Record<string, never>>;
+}
+
+const mk = (spec: PatternSpec<Record<string, never>>, suffix: string) =>
+  compilePatterns({
+    name: `php-${suffix}`,
+    language: PHP.php_only,
+    patterns: [spec],
+  } satisfies LanguagePatterns<Record<string, never>>);
+
+const PHP_PATTERNS: PhpPatternBundle = {
+  laravelRoute: mk(LARAVEL_ROUTE_SPEC, 'laravel-route'),
+  httpFacade: mk(HTTP_FACADE_SPEC, 'http-facade'),
+  guzzleMember: mk(GUZZLE_MEMBER_SPEC, 'guzzle-member'),
+  fileGetContents: mk(FILE_GET_CONTENTS_SPEC, 'file-get-contents'),
+};
 
 /**
  * Extract the inner text of a PHP `string` node. The tree-sitter-php
@@ -39,11 +98,8 @@ const LARAVEL_PATTERNS = compilePatterns({
  * child nodes.
  */
 function phpStringText(node: import('tree-sitter').SyntaxNode): string | null {
-  // Most single-quoted strings expose their inner content through the
-  // full node text (including quotes), which unquoteLiteral strips.
   const direct = unquoteLiteral(node.text);
   if (direct !== null && direct !== node.text) return direct;
-  // Fall back to child string_content / string_value node if present.
   for (const child of node.children) {
     if (child.type === 'string_content' || child.type === 'string_value') {
       return child.text;
@@ -52,13 +108,32 @@ function phpStringText(node: import('tree-sitter').SyntaxNode): string | null {
   return direct;
 }
 
+/**
+ * HTTP client helpers (`Http::`, Guzzle) are almost always called with
+ * a path relative to a configured base URL, or a full URL. File paths
+ * are rare. Accept both relative (`/api/...`) and absolute (`http(s)://`).
+ */
+function isHttpClientPath(path: string): boolean {
+  return path.startsWith('/') || path.startsWith('http://') || path.startsWith('https://');
+}
+
+/**
+ * `file_get_contents` is used for both HTTP and filesystem reads. Only
+ * emit a consumer contract when the URL is an absolute HTTP(S) URL to
+ * avoid false positives for local file paths and stream wrappers
+ * (`php://input`, `file://`, `data:`, ...).
+ */
+function isHttpUrlLiteral(path: string): boolean {
+  return path.startsWith('http://') || path.startsWith('https://');
+}
+
 export const PHP_HTTP_PLUGIN: HttpLanguagePlugin = {
   name: 'php-http',
   language: PHP.php_only,
   scan(tree) {
     const out: HttpDetection[] = [];
 
-    for (const match of runCompiledPatterns(LARAVEL_PATTERNS, tree)) {
+    for (const match of runCompiledPatterns(PHP_PATTERNS.laravelRoute, tree)) {
       const methodNode = match.captures.method;
       const pathNode = match.captures.path;
       if (!methodNode || !pathNode) continue;
@@ -74,6 +149,53 @@ export const PHP_HTTP_PLUGIN: HttpLanguagePlugin = {
       });
     }
 
+    for (const match of runCompiledPatterns(PHP_PATTERNS.httpFacade, tree)) {
+      const methodNode = match.captures.method;
+      const pathNode = match.captures.path;
+      if (!methodNode || !pathNode) continue;
+      const path = phpStringText(pathNode);
+      if (path === null || !isHttpClientPath(path)) continue;
+      out.push({
+        role: 'consumer',
+        framework: 'laravel-http',
+        method: methodNode.text.toUpperCase(),
+        path,
+        name: null,
+        confidence: 0.7,
+      });
+    }
+
+    for (const match of runCompiledPatterns(PHP_PATTERNS.guzzleMember, tree)) {
+      const methodNode = match.captures.method;
+      const pathNode = match.captures.path;
+      if (!methodNode || !pathNode) continue;
+      const path = phpStringText(pathNode);
+      if (path === null || !isHttpClientPath(path)) continue;
+      out.push({
+        role: 'consumer',
+        framework: 'guzzle',
+        method: methodNode.text.toUpperCase(),
+        path,
+        name: null,
+        confidence: 0.7,
+      });
+    }
+
+    for (const match of runCompiledPatterns(PHP_PATTERNS.fileGetContents, tree)) {
+      const pathNode = match.captures.path;
+      if (!pathNode) continue;
+      const path = phpStringText(pathNode);
+      if (path === null || !isHttpUrlLiteral(path)) continue;
+      out.push({
+        role: 'consumer',
+        framework: 'file-get-contents',
+        method: 'GET',
+        path,
+        name: null,
+        confidence: 0.7,
+      });
+    }
+
     return out;
   },
 };

gitnexus/src/core/group/group-path-utils.ts

@@ -0,0 +1,42 @@
+/**
+ * Shared service-path normalization for group tools (`service` monorepo filter)
+ * and subgroup membership checks.
+ *
+ * Inputs may originate from tree-sitter, the OS file API, or user-supplied
+ * MCP arguments, so both `\` and `/` separators are accepted. Internally we
+ * normalize to POSIX-style `/` for case-sensitive segment comparisons.
+ */
+
+function toPosix(p: string): string {
+  return p.replace(/\\/g, '/');
+}
+
+export function normalizeServicePrefix(service: unknown): string | undefined {
+  if (service === undefined || service === null) return undefined;
+  const s = toPosix(String(service)).trim().replace(/\/+$/, '');
+  return s.length > 0 ? s : undefined;
+}
+
+export function fileMatchesServicePrefix(
+  filePath: string | undefined,
+  prefix: string | undefined,
+): boolean {
+  if (!prefix) return true;
+  if (!filePath) return false;
+  const normalized = toPosix(filePath);
+  return normalized === prefix || normalized.startsWith(`${prefix}/`);
+}
+
+/**
+ * True if `repoPath` is at or beneath `subgroup` (member-path prefix in
+ * `group.yaml`). Empty / missing `subgroup` matches every repo.
+ *
+ * @param exact When set, requires an exact equality match (no descendant repos).
+ */
+export function repoInSubgroup(repoPath: string, subgroup?: string, exact?: boolean): boolean {
+  if (!subgroup?.trim()) return true;
+  const s = toPosix(subgroup).replace(/\/+$/, '');
+  const r = toPosix(repoPath);
+  if (exact) return r === s;
+  return r === s || r.startsWith(`${s}/`);
+}

gitnexus/src/core/group/resolve-at-member.ts

@@ -0,0 +1,34 @@
+/**
+ * Map MCP/CLI `@groupName` or `@groupName/memberPath` to a concrete member path in group.yaml.
+ */
+
+import { loadGroupConfig } from './config-parser.js';
+import { getDefaultGitnexusDir, getGroupDir } from './storage.js';
+
+export async function resolveAtGroupMemberRepoPath(
+  groupName: string,
+  explicitMemberPath: string | undefined,
+): Promise<{ ok: true; repoPath: string } | { ok: false; error: string }> {
+  const trimmed = groupName.trim();
+  if (!trimmed) return { ok: false, error: 'Group name is empty.' };
+  try {
+    const groupDir = getGroupDir(getDefaultGitnexusDir(), trimmed);
+    const config = await loadGroupConfig(groupDir);
+    const keys = Object.keys(config.repos).sort((a, b) => a.localeCompare(b));
+    if (keys.length === 0) {
+      return { ok: false, error: `Group "${trimmed}" has no repos in group.yaml.` };
+    }
+    if (explicitMemberPath !== undefined && explicitMemberPath !== '') {
+      if (!(explicitMemberPath in config.repos)) {
+        return {
+          ok: false,
+          error: `Unknown member path "${explicitMemberPath}" in group "${trimmed}". Known paths: ${keys.join(', ')}`,
+        };
+      }
+      return { ok: true, repoPath: explicitMemberPath };
+    }
+    return { ok: true, repoPath: keys[0]! };
+  } catch (e) {
+    return { ok: false, error: e instanceof Error ? e.message : String(e) };
+  }
+}

gitnexus/src/core/group/service.ts

@@ -3,10 +3,24 @@
  * DB access is injected via GroupToolPort so this module stays free of LocalBackend private API.
  */
 
+import fsp from 'node:fs/promises';
+import path from 'node:path';
 import { checkStaleness } from '../git-staleness.js';
-import { loadGroupConfig } from './config-parser.js';
+import { GroupNotFoundError, loadGroupConfig } from './config-parser.js';
+import {
+  fileMatchesServicePrefix,
+  normalizeServicePrefix,
+  repoInSubgroup,
+} from './group-path-utils.js';
 import { getDefaultGitnexusDir, getGroupDir, listGroups, readContractRegistry } from './storage.js';
 import { syncGroup } from './sync.js';
+import type {
+  ContractRegistry,
+  CrossLink,
+  GroupConfig,
+  GroupContextResult,
+  StoredContract,
+} from './types.js';
 
 export interface GroupRepoHandle {
   id: string;
@@ -52,12 +66,149 @@ export interface GroupToolPort {
       includeTests: boolean;
     },
   ): Promise<unknown | null>;
+  context(
+    repo: GroupRepoHandle,
+    params: {
+      name?: string;
+      uid?: string;
+      file_path?: string;
+      include_content?: boolean;
+    },
+  ): Promise<unknown>;
 }
 
-function repoInSubgroup(repoPath: string, subgroup?: string): boolean {
-  if (!subgroup?.trim()) return true;
-  const s = subgroup.replace(/\/+$/, '');
-  return repoPath === s || repoPath.startsWith(`${s}/`);
+function isStoredContract(raw: unknown): raw is StoredContract {
+  if (!raw || typeof raw !== 'object') return false;
+  const o = raw as Record<string, unknown>;
+  return (
+    typeof o.contractId === 'string' &&
+    typeof o.type === 'string' &&
+    typeof o.repo === 'string' &&
+    typeof o.role === 'string' &&
+    (o.role === 'provider' || o.role === 'consumer') &&
+    typeof o.symbolUid === 'string' &&
+    typeof o.symbolName === 'string' &&
+    typeof o.confidence === 'number' &&
+    o.meta !== undefined &&
+    typeof o.meta === 'object' &&
+    o.meta !== null &&
+    o.symbolRef !== undefined &&
+    typeof o.symbolRef === 'object' &&
+    o.symbolRef !== null &&
+    typeof (o.symbolRef as Record<string, unknown>).filePath === 'string' &&
+    typeof (o.symbolRef as Record<string, unknown>).name === 'string'
+  );
+}
+
+function filterQueryByServicePrefix(
+  queryResult: {
+    processes?: Array<Record<string, unknown>>;
+    process_symbols?: Array<Record<string, unknown>>;
+  },
+  servicePrefix: string,
+): { processes: Array<Record<string, unknown>>; process_symbols: Array<Record<string, unknown>> } {
+  const symbols = (queryResult.process_symbols || []).filter((s) =>
+    fileMatchesServicePrefix(
+      typeof s.filePath === 'string' ? s.filePath : undefined,
+      servicePrefix,
+    ),
+  );
+  const allowed = new Set(
+    symbols.map((s) => String((s as { process_id?: string }).process_id ?? '')).filter(Boolean),
+  );
+  const processes = (queryResult.processes || []).filter((p) => allowed.has(String(p.id)));
+  return { processes, process_symbols: symbols };
+}
+
+function isCrossLink(raw: unknown): raw is CrossLink {
+  if (!raw || typeof raw !== 'object') return false;
+  const o = raw as Record<string, unknown>;
+  const from = o.from as Record<string, unknown> | undefined;
+  const to = o.to as Record<string, unknown> | undefined;
+  if (!from || !to) return false;
+  if (typeof from.repo !== 'string' || typeof to.repo !== 'string') return false;
+  return typeof o.contractId === 'string' && typeof o.type === 'string';
+}
+
+async function loadContractRegistryResilient(
+  groupDir: string,
+): Promise<
+  { ok: true; registry: ContractRegistry; skippedCorrupt: number } | { ok: false; error: string }
+> {
+  const filePath = path.join(groupDir, 'contracts.json');
+  let raw: string;
+  try {
+    raw = await fsp.readFile(filePath, 'utf-8');
+  } catch (e) {
+    if ((e as NodeJS.ErrnoException).code === 'ENOENT') {
+      return { ok: false, error: `No contracts.json for this group. Run group_sync first.` };
+    }
+    return { ok: false, error: e instanceof Error ? e.message : String(e) };
+  }
+
+  let root: unknown;
+  try {
+    root = JSON.parse(raw);
+  } catch {
+    return { ok: false, error: 'contracts.json is not valid JSON' };
+  }
+
+  if (!root || typeof root !== 'object' || Array.isArray(root)) {
+    return { ok: false, error: 'contracts.json has an invalid root object' };
+  }
+
+  const base = root as Record<string, unknown>;
+  const contractsRaw = base.contracts;
+  const crossRaw = base.crossLinks;
+  let skippedCorrupt = 0;
+
+  const contracts: StoredContract[] = [];
+  if (Array.isArray(contractsRaw)) {
+    for (const row of contractsRaw) {
+      try {
+        if (isStoredContract(row)) {
+          contracts.push(row);
+        } else {
+          skippedCorrupt++;
+          console.warn('[group] skipping corrupt contract row in contracts.json');
+        }
+      } catch {
+        skippedCorrupt++;
+        console.warn('[group] skipping corrupt contract row in contracts.json');
+      }
+    }
+  }
+
+  const crossLinks: CrossLink[] = [];
+  if (Array.isArray(crossRaw)) {
+    for (const row of crossRaw) {
+      try {
+        if (isCrossLink(row)) {
+          crossLinks.push(row);
+        } else {
+          skippedCorrupt++;
+          console.warn('[group] skipping corrupt crossLinks row in contracts.json');
+        }
+      } catch {
+        skippedCorrupt++;
+        console.warn('[group] skipping corrupt crossLinks row in contracts.json');
+      }
+    }
+  }
+
+  const registry: ContractRegistry = {
+    version: typeof base.version === 'number' ? base.version : 0,
+    generatedAt: typeof base.generatedAt === 'string' ? base.generatedAt : '',
+    repoSnapshots:
+      base.repoSnapshots && typeof base.repoSnapshots === 'object' && base.repoSnapshots !== null
+        ? (base.repoSnapshots as Record<string, { indexedAt: string; lastCommit: string }>)
+        : {},
+    missingRepos: Array.isArray(base.missingRepos) ? (base.missingRepos as string[]) : [],
+    contracts,
+    crossLinks,
+  };
+
+  return { ok: true, registry, skippedCorrupt };
 }
 
 export class GroupService {
@@ -70,7 +221,14 @@ export class GroupService {
       return { groups };
     }
     const groupDir = getGroupDir(getDefaultGitnexusDir(), name);
-    const config = await loadGroupConfig(groupDir);
+    let config: GroupConfig;
+    try {
+      config = await loadGroupConfig(groupDir);
+    } catch (err) {
+      if (err instanceof GroupNotFoundError)
+        return { error: `Group "${name}" not found. Run group_list to see configured groups.` };
+      throw err;
+    }
     return {
       name: config.name,
       description: config.description,
@@ -83,7 +241,14 @@ export class GroupService {
     const name = String(params.name ?? '').trim();
     if (!name) return { error: 'name is required' };
     const groupDir = getGroupDir(getDefaultGitnexusDir(), name);
-    const config = await loadGroupConfig(groupDir);
+    let config: GroupConfig;
+    try {
+      config = await loadGroupConfig(groupDir);
+    } catch (err) {
+      if (err instanceof GroupNotFoundError)
+        return { error: `Group "${name}" not found. Run group_list to see configured groups.` };
+      throw err;
+    }
     const result = await syncGroup(config, {
       groupDir,
       exactOnly: Boolean(params.exactOnly),
@@ -103,10 +268,14 @@ export class GroupService {
     const name = String(params.name ?? '').trim();
     if (!name) return { error: 'name is required' };
     const groupDir = getGroupDir(getDefaultGitnexusDir(), name);
-    const registry = await readContractRegistry(groupDir);
-    if (!registry) {
-      return { error: `No contracts.json for group "${name}". Run group_sync first.` };
+    const loaded = await loadContractRegistryResilient(groupDir);
+    if (loaded.ok === false) {
+      if (loaded.error.includes('No contracts.json')) {
+        return { error: `No contracts.json for group "${name}". Run group_sync first.` };
+      }
+      return { error: loaded.error };
     }
+    const { registry, skippedCorrupt } = loaded;
     let contracts = registry.contracts;
     if (params.type) contracts = contracts.filter((c) => c.type === params.type);
     if (params.repo) contracts = contracts.filter((c) => c.repo === params.repo);
@@ -119,42 +288,162 @@ export class GroupService {
       );
       contracts = contracts.filter((c) => !matchedIds.has(`${c.repo}::${c.contractId}`));
     }
-    return { contracts, crossLinks: registry.crossLinks };
+    const out: Record<string, unknown> = { contracts, crossLinks: registry.crossLinks };
+    if (skippedCorrupt > 0) out.skippedCorrupt = skippedCorrupt;
+    return out;
+  }
+
+  async groupImpact(params: Record<string, unknown>): Promise<unknown> {
+    const { runGroupImpact } = await import('./cross-impact.js');
+    return runGroupImpact({ port: this.port, gitnexusDir: getDefaultGitnexusDir() }, params);
+  }
+
+  async groupContext(params: Record<string, unknown>): Promise<GroupContextResult> {
+    const name = String(params.name ?? '').trim();
+    const target = typeof params.target === 'string' ? params.target.trim() : '';
+    const uid = typeof params.uid === 'string' ? params.uid.trim() : undefined;
+    const file_path = typeof params.file_path === 'string' ? params.file_path : undefined;
+    const include_content = Boolean(params.include_content);
+    if (
+      params.service !== undefined &&
+      params.service !== null &&
+      String(params.service).trim() === ''
+    ) {
+      return { group: name || '', error: 'service must not be an empty string', results: [] };
+    }
+    const servicePrefix = normalizeServicePrefix(params.service);
+    const subgroup = typeof params.subgroup === 'string' ? params.subgroup : undefined;
+    const subgroupExact = params.subgroupExact === true;
+
+    if (!name) {
+      return { group: '', error: 'name is required', results: [] };
+    }
+    if (!uid && !target) {
+      return { group: name, error: 'target or uid is required', results: [] };
+    }
+
+    const groupDir = getGroupDir(getDefaultGitnexusDir(), name);
+    let config: GroupConfig;
+    try {
+      config = await loadGroupConfig(groupDir);
+    } catch (e) {
+      if (e instanceof GroupNotFoundError)
+        return {
+          group: name,
+          target: target || uid,
+          service: servicePrefix,
+          error: `Group "${name}" not found. Run group_list to see configured groups.`,
+          results: [],
+        };
+      return {
+        group: name,
+        target: target || uid,
+        service: servicePrefix,
+        error: e instanceof Error ? e.message : String(e),
+        results: [],
+      };
+    }
+
+    const memberEntries = Object.entries(config.repos).filter(([repoPath]) =>
+      repoInSubgroup(repoPath, subgroup, subgroupExact),
+    );
+
+    const results: GroupContextResult['results'] = await Promise.all(
+      memberEntries.map(async ([repoPath, registryName]) => {
+        try {
+          const repoObj = await this.port.resolveRepo(registryName);
+          const payload = await this.port.context(repoObj, {
+            name: target || undefined,
+            uid,
+            file_path,
+            include_content,
+          });
+
+          if (servicePrefix) {
+            const st = (payload as { status?: string })?.status;
+            const sym = (payload as { symbol?: { filePath?: string } })?.symbol;
+            if (st === 'found' && !fileMatchesServicePrefix(sym?.filePath, servicePrefix)) {
+              return { repoPath, registryName, payload: {} };
+            }
+          }
+
+          return { repoPath, registryName, payload };
+        } catch (e) {
+          return {
+            repoPath,
+            registryName,
+            payload: { error: e instanceof Error ? e.message : String(e) },
+          };
+        }
+      }),
+    );
+
+    return {
+      group: name,
+      target: target || uid,
+      service: servicePrefix,
+      results,
+    };
   }
 
   async groupQuery(params: Record<string, unknown>): Promise<unknown> {
     const name = String(params.name ?? '').trim();
     const queryText = String(params.query ?? '').trim();
     if (!name || !queryText) return { error: 'name and query are required' };
+    if (
+      params.service !== undefined &&
+      params.service !== null &&
+      String(params.service).trim() === ''
+    ) {
+      return { error: 'service must not be an empty string' };
+    }
+    const servicePrefix = normalizeServicePrefix(params.service);
 
     const limit = typeof params.limit === 'number' && params.limit > 0 ? params.limit : 5;
     const subgroup = typeof params.subgroup === 'string' ? params.subgroup : undefined;
+    const subgroupExact = params.subgroupExact === true;
     const groupDir = getGroupDir(getDefaultGitnexusDir(), name);
-    const config = await loadGroupConfig(groupDir);
-
-    const perRepo: Array<{ repo: string; score: number; processes: unknown[] }> = [];
-    for (const [repoPath, registryName] of Object.entries(config.repos)) {
-      if (!repoInSubgroup(repoPath, subgroup)) continue;
-      try {
-        const repoObj = await this.port.resolveRepo(registryName);
-        const queryResult = (await this.port.query(repoObj, {
-          query: queryText,
-          limit,
-          max_symbols: 10,
-          include_content: false,
-        })) as { processes?: Array<Record<string, unknown>> };
-        const processes = queryResult.processes || [];
-        const scored = processes.map((p, idx) => ({
-          ...p,
-          _rrf_score: 1 / (idx + 1 + 60),
-          _repo: repoPath,
-        }));
-        perRepo.push({ repo: repoPath, score: 0, processes: scored });
-      } catch {
-        perRepo.push({ repo: repoPath, score: 0, processes: [] });
-      }
+    let config: GroupConfig;
+    try {
+      config = await loadGroupConfig(groupDir);
+    } catch (err) {
+      if (err instanceof GroupNotFoundError)
+        return { error: `Group "${name}" not found. Run group_list to see configured groups.` };
+      throw err;
     }
 
+    const memberEntries = Object.entries(config.repos).filter(([repoPath]) =>
+      repoInSubgroup(repoPath, subgroup, subgroupExact),
+    );
+
+    const perRepo = await Promise.all(
+      memberEntries.map(async ([repoPath, registryName]) => {
+        try {
+          const repoObj = await this.port.resolveRepo(registryName);
+          const queryResult = (await this.port.query(repoObj, {
+            query: queryText,
+            limit,
+            max_symbols: 10,
+            include_content: false,
+          })) as {
+            processes?: Array<Record<string, unknown>>;
+            process_symbols?: Array<Record<string, unknown>>;
+          };
+          const processes = servicePrefix
+            ? filterQueryByServicePrefix(queryResult, servicePrefix).processes
+            : queryResult.processes || [];
+          const scored = processes.map((p, idx) => ({
+            ...p,
+            _rrf_score: 1 / (idx + 1 + 60),
+            _repo: repoPath,
+          }));
+          return { repo: repoPath, score: 0, processes: scored as unknown[] };
+        } catch {
+          return { repo: repoPath, score: 0, processes: [] as unknown[] };
+        }
+      }),
+    );
+
     const allProcesses = perRepo.flatMap((r) => r.processes as Array<Record<string, unknown>>);
     allProcesses.sort((a, b) => (b._rrf_score as number) - (a._rrf_score as number));
     const topN = allProcesses.slice(0, limit);
@@ -171,7 +460,14 @@ export class GroupService {
     const name = String(params.name ?? '').trim();
     if (!name) return { error: 'name is required' };
     const groupDir = getGroupDir(getDefaultGitnexusDir(), name);
-    const config = await loadGroupConfig(groupDir);
+    let config: GroupConfig;
+    try {
+      config = await loadGroupConfig(groupDir);
+    } catch (err) {
+      if (err instanceof GroupNotFoundError)
+        return { error: `Group "${name}" not found. Run group_list to see configured groups.` };
+      throw err;
+    }
     const registry = await readContractRegistry(groupDir);
 
     const repoStatuses: Record<
@@ -184,13 +480,10 @@ export class GroupService {
       }
     > = {};
 
-    const fsp = await import('node:fs/promises');
-    const pathMod = await import('node:path');
-
     for (const [repoPath, registryName] of Object.entries(config.repos)) {
       try {
         const repoObj = await this.port.resolveRepo(registryName);
-        const metaPath = pathMod.join(repoObj.storagePath, 'meta.json');
+        const metaPath = path.join(repoObj.storagePath, 'meta.json');
         const metaRaw = await fsp.readFile(metaPath, 'utf-8').catch(() => '{}');
         const meta = JSON.parse(metaRaw) as { lastCommit?: string; indexedAt?: string };
 

gitnexus/src/core/group/types.ts

@@ -96,6 +96,9 @@ export interface RepoHandle {
   storagePath: string;
 }
 
+/** Why local impact or fan-out stopped early (e.g. wall-clock budget exhausted). */
+export type GroupImpactTruncationReason = 'timeout' | 'partial';
+
 export interface GroupImpactResult {
   local: unknown;
   group: string;
@@ -110,6 +113,36 @@ export interface GroupImpactResult {
     cross_repo_hits: number;
   };
   risk: string;
+  /**
+   * Milliseconds budget applied to the **Phase 1 local impact** leg (`safeLocalImpact`).
+   * If the walk hits this wall first, expect `truncationReason: 'timeout'` and a partial `local` payload.
+   */
+  timeoutMs?: number;
+  /** Present when local impact or fan-out stopped early (timeout, graph cap, etc.). */
+  truncationReason?: GroupImpactTruncationReason;
+  /**
+   * Human-readable note when `crossDepth` was clamped (e.g. multi-hop not implemented yet).
+   */
+  crossDepthWarning?: string;
+}
+
+/** One repo’s `context` tool payload in a group-scoped context run. */
+export interface GroupContextRepoEntry {
+  repoPath: string;
+  registryName: string;
+  payload: unknown;
+}
+
+/**
+ * Aggregated group `context`: explicit per-repo rows (no merged symbol payloads).
+ * Use top-level `error` only for unrecoverable failures, not for “no matches” or service scope misses.
+ */
+export interface GroupContextResult {
+  group: string;
+  target?: string;
+  service?: string;
+  error?: string;
+  results: GroupContextRepoEntry[];
 }
 
 export interface CrossRepoImpact {

gitnexus/src/core/ingestion/ast-cache.ts

@@ -1,8 +1,24 @@
 import { LRUCache } from 'lru-cache';
 import Parser from 'tree-sitter';
 
+/**
+ * Minimal structural shape consumers need when reading Trees back
+ * through a phase-dependency boundary. Declared here so phases that
+ * receive ASTCache via `getPhaseOutput<...>` don't hand-roll their
+ * own inline structural types that silently drift when ASTCache's
+ * contract changes.
+ *
+ * Typed as `unknown` at the Tree boundary because consumers on the
+ * other side of the phase-output map don't share tree-sitter's type
+ * graph (e.g. COBOL's standalone processor).
+ */
+export interface ASTCacheReader {
+  get(filePath: string): unknown;
+  clear(): void;
+}
+
 // Define the interface for the Cache
-export interface ASTCache {
+export interface ASTCache extends ASTCacheReader {
   get: (filePath: string) => Parser.Tree | undefined;
   set: (filePath: string, tree: Parser.Tree) => void;
   clear: () => void;
@@ -17,8 +33,20 @@ export const createASTCache = (maxSize: number = 50): ASTCache => {
     max: effectiveMax,
     dispose: (tree) => {
       try {
-        // NOTE: web-tree-sitter has tree.delete(); native tree-sitter trees are GC-managed.
-        // Keep this try/catch so we don't crash on either runtime.
+        // NOTE: web-tree-sitter has tree.delete(); native tree-sitter
+        // trees are GC-managed and .delete is absent (no-op here).
+        //
+        // Single-owner invariant (load-bearing under WASM): a given
+        // Parser.Tree reference must live in AT MOST ONE ASTCache
+        // that disposes. The parse-phase chunk-local cache clears
+        // between chunks; the cross-phase `scopeTreeCache` (also an
+        // ASTCache today) holds the same Tree by reference. Under
+        // native tree-sitter this is benign (dispose is a no-op).
+        // If/when GitNexus adopts web-tree-sitter for sequential
+        // parsing, the cross-phase cache must either (a) skip
+        // writing Trees that are already owned by a disposing cache,
+        // or (b) use tree.copy() per entry. Failing to pick one
+        // will hand freed memory to scope-resolution.
         (tree as unknown as { delete?: () => void }).delete?.();
       } catch (e) {
         console.warn('Failed to delete tree from WASM memory', e);

gitnexus/src/core/ingestion/call-processor.ts

@@ -1,12 +1,34 @@
 import { KnowledgeGraph } from '../graph/types.js';
 import { ASTCache } from './ast-cache.js';
-import type {
-  SymbolDefinition,
-  SymbolTableReader,
-  HeritageMap,
-  ExtractedHeritage,
-} from './model/index.js';
+import type { SymbolDefinition } from 'gitnexus-shared';
+import type { SymbolTableReader, HeritageMap, ExtractedHeritage } from './model/index.js';
 import { CLASS_TYPES, CALL_TARGET_TYPES, lookupMethodByOwnerWithMRO } from './model/index.js';
+import type { DispatchDecision, ReceiverEnriched } from './call-types.js';
+
+/** Shorthand for the receiver-source discriminant shared across the DAG. */
+type ReceiverSource = ReceiverEnriched['receiverSource'];
+
+/**
+ * DAG stage 4 fallback: used when `selectDispatch` is absent or returns null.
+ * Preserves pre-DAG dispatch semantics:
+ *   - 'constructor'         → constructor branch
+ *   - 'free'                → free branch (admits Swift/Kotlin class-target fast path)
+ *   - 'member' or undefined → owner-scoped branch
+ *
+ * `undefined` callForm MUST route through owner-scoped (not free) so bare
+ * identifiers without a classified shape do NOT trigger `resolveFreeCall`'s
+ * class-target fast path. Without a `receiverTypeName`, the owner-scoped
+ * branch falls through to `resolveModuleAliasedCall` + `singleCandidate`,
+ * matching legacy behavior where non-callable symbols (Class, Interface)
+ * null-route instead of producing spurious Constructor edges.
+ */
+const defaultDispatchDecision = (
+  callForm: 'free' | 'member' | 'constructor' | undefined,
+): DispatchDecision => {
+  if (callForm === 'constructor') return { primary: 'constructor' };
+  if (callForm === 'free') return { primary: 'free' };
+  return { primary: 'owner-scoped' };
+};
 import Parser from 'tree-sitter';
 import type { ResolutionContext } from './model/resolution-context.js';
 import { TIER_CONFIDENCE, type ResolutionTier } from './model/resolution-context.js';
@@ -15,6 +37,7 @@ import { isLanguageAvailable, loadParser, loadLanguage } from '../tree-sitter/pa
 import { getProvider } from './languages/index.js';
 import { generateId } from '../../lib/utils.js';
 import { getLanguageFromFilename, SupportedLanguages } from 'gitnexus-shared';
+import { isRegistryPrimary } from './registry-primary-flag.js';
 import { isVerboseIngestionEnabled } from './utils/verbose.js';
 import { yieldToEventLoop } from './utils/event-loop.js';
 import {
@@ -728,6 +751,8 @@ export const processCalls = async (
 
     const language = getLanguageFromFilename(file.path);
     if (!language) continue;
+    // Registry-primary gate: scope-based phase owns CALLS for this lang.
+    if (isRegistryPrimary(language)) continue;
     if (!isLanguageAvailable(language)) {
       if (skippedByLang) {
         skippedByLang.set(language, (skippedByLang.get(language) ?? 0) + 1);
@@ -766,22 +791,26 @@ export const processCalls = async (
     // Extract heritage from query matches to build parentMap for buildTypeEnv.
     // Heritage-processor runs in PARALLEL, so graph edges don't exist when buildTypeEnv runs.
     const fileParentMap = new Map<string, string[]>();
-    for (const match of matches) {
-      const captureMap: Record<string, any> = {};
-      match.captures.forEach((c) => (captureMap[c.name] = c.node));
-      if (captureMap['heritage.class'] && captureMap['heritage.extends']) {
-        const className: string = captureMap['heritage.class'].text;
-        const parentName: string = captureMap['heritage.extends'].text;
-        const extendsNode = captureMap['heritage.extends'];
-        const fieldDecl = extendsNode.parent;
-        if (fieldDecl?.type === 'field_declaration' && fieldDecl.childForFieldName('name'))
-          continue;
-        let parents = fileParentMap.get(className);
-        if (!parents) {
-          parents = [];
-          fileParentMap.set(className, parents);
+    if (provider.heritageExtractor) {
+      for (const match of matches) {
+        const captureMap: Record<string, any> = {};
+        match.captures.forEach((c) => (captureMap[c.name] = c.node));
+        if (captureMap['heritage.class']) {
+          const heritageItems = provider.heritageExtractor.extract(captureMap, {
+            filePath: file.path,
+            language,
+          });
+          for (const item of heritageItems) {
+            if (item.kind === 'extends') {
+              let parents = fileParentMap.get(item.className);
+              if (!parents) {
+                parents = [];
+                fileParentMap.set(item.className, parents);
+              }
+              if (!parents.includes(item.parentName)) parents.push(item.parentName);
+            }
+          }
         }
-        if (!parents.includes(parentName)) parents.push(parentName);
       }
     }
     const parentMap: ReadonlyMap<string, readonly string[]> = fileParentMap;
@@ -991,6 +1020,28 @@ export const processCalls = async (
 
       const calledName = nameNode.text;
 
+      // Check heritage extractor for call-based heritage (e.g., Ruby include/extend/prepend)
+      if (provider.heritageExtractor?.extractFromCall) {
+        const heritageItems = provider.heritageExtractor.extractFromCall(
+          calledName,
+          captureMap['call'],
+          { filePath: file.path, language },
+        );
+        if (heritageItems !== null) {
+          for (const item of heritageItems) {
+            collectedHeritage.push({
+              filePath: file.path,
+              className: item.className,
+              parentName: item.parentName,
+              kind: item.kind,
+            });
+          }
+          return;
+        }
+      }
+
+      // Dispatch: route language-specific calls (properties, imports)
+      // Heritage routing is handled by heritageExtractor.extractFromCall above.
       const routed = callRouter?.(calledName, captureMap['call']);
       if (routed) {
         switch (routed.kind) {
@@ -998,17 +1049,6 @@ export const processCalls = async (
           case 'import':
             return;
 
-          case 'heritage':
-            for (const item of routed.items) {
-              collectedHeritage.push({
-                filePath: file.path,
-                className: item.enclosingClass,
-                parentName: item.mixinName,
-                kind: item.heritageKind,
-              });
-            }
-            return;
-
           case 'properties': {
             const fileId = generateId('File', file.path);
             const propEnclosingClassId = findEnclosingClassId(captureMap['call'], file.path);
@@ -1061,10 +1101,17 @@ export const processCalls = async (
 
       if (provider.isBuiltInName(calledName)) return;
 
-      const callForm = inferCallForm(callNode, nameNode);
-      const receiverName = callForm === 'member' ? extractReceiverName(nameNode) : undefined;
+      // --- DAG stage 2-3: classify-form + infer-receiver (shared defaults) ---
+      // These stages run the shared inference chain. Language providers can
+      // customize infer-receiver (stage 3) via the inferImplicitReceiver hook
+      // which runs AFTER this default chain (typed-binding → constructor-map →
+      // module-alias → class-as-receiver → mixed-chain), and selectDispatch
+      // (stage 4) which picks the resolver branch.
+      let callForm = inferCallForm(callNode, nameNode);
+      let receiverName = callForm === 'member' ? extractReceiverName(nameNode) : undefined;
       let receiverTypeName =
         receiverName && typeEnv ? typeEnv.lookup(receiverName, callNode) : undefined;
+      let receiverSource: ReceiverSource = receiverTypeName ? 'typed-binding' : 'none';
       // Phase P: virtual dispatch override — when the declared type is a base class but
       // the constructor created a known subclass, prefer the more specific type.
       // Checks per-file parentMap first, then falls back to globalParentMap for
@@ -1103,6 +1150,7 @@ export const processCalls = async (
               ctx.model.types.lookupClassByName(receiverTypeName).length > 0)
           ) {
             receiverTypeName = ctorType;
+            receiverSource = 'constructor-map';
           }
         }
       }
@@ -1111,10 +1159,14 @@ export const processCalls = async (
         const enclosingFunc = findEnclosingFunction(callNode, file.path, ctx, provider);
         const funcName = enclosingFunc ? extractFuncNameFromSourceId(enclosingFunc) : '';
         receiverTypeName = lookupReceiverType(receiverIndex, funcName, receiverName);
+        if (receiverTypeName) receiverSource = 'constructor-map';
       }
-      // Fall back to class-as-receiver for static method calls (e.g. UserService.find_user()).
-      // When the receiver name is not a variable in TypeEnv but resolves to a Class/Struct/Interface
-      // through the standard tiered resolution, use it directly as the receiver type.
+      // Fall back to class-as-receiver for static method calls (e.g. UserService.find_user(),
+      // Greetable.format()). When the receiver name is not a variable in TypeEnv but
+      // resolves to a class-like symbol (Class / Interface / Struct / Enum / Trait) via
+      // tiered resolution, use it directly as the receiver type. `Trait` is included so
+      // Ruby module class-method calls flow through the class-as-receiver path and reach
+      // the `selectDispatch` hook's singleton branch.
       if (!receiverTypeName && receiverName && callForm === 'member') {
         const typeResolved = ctx.resolve(receiverName, file.path);
         if (
@@ -1124,10 +1176,12 @@ export const processCalls = async (
               d.type === 'Class' ||
               d.type === 'Interface' ||
               d.type === 'Struct' ||
-              d.type === 'Enum',
+              d.type === 'Enum' ||
+              d.type === 'Trait',
           )
         ) {
           receiverTypeName = receiverName;
+          receiverSource = 'class-as-receiver';
         }
       }
       // Hoist sourceId so it's available for ACCESSES edge emission during chain walk.
@@ -1173,11 +1227,51 @@ export const processCalls = async (
                 makeAccessEmitter(graph, sourceId),
                 heritageMap,
               );
+              if (receiverTypeName) receiverSource = 'mixed-chain';
             }
           }
         }
       }
 
+      // --- DAG stage 3: infer-receiver (provider hook) ---
+      // Synthesize implicit receivers for languages that omit them (e.g., Ruby bare-call).
+      // This hook runs AFTER the shared inference chain so explicit receivers /
+      // typed bindings always take precedence. Output (if non-null) overlays onto
+      // the ReceiverEnriched for the next stage.
+      let dispatchHint: string | undefined;
+      if (provider.inferImplicitReceiver) {
+        const override = provider.inferImplicitReceiver({
+          calledName,
+          callForm,
+          receiverName,
+          receiverTypeName,
+          callNode,
+          filePath: file.path,
+        });
+        if (override) {
+          callForm = override.callForm;
+          receiverName = override.receiverName;
+          receiverTypeName = override.receiverTypeName;
+          receiverSource = override.receiverSource;
+          dispatchHint = override.hint;
+        }
+      }
+
+      // --- DAG stage 4: select-dispatch (provider hook + default fallback) ---
+      // Decide which resolver path to try first (primary) and fallback strategy.
+      // Language providers can customize dispatch via selectDispatch hook; all
+      // others use the shared defaultDispatchDecision. Always non-null after this
+      // block so downstream resolvers are table-driven.
+      const dispatchDecision: DispatchDecision =
+        provider.selectDispatch?.({
+          calledName,
+          callForm,
+          receiverName,
+          receiverTypeName,
+          receiverSource,
+          hint: dispatchHint,
+        }) ?? defaultDispatchDecision(callForm);
+
       // Build overload hints for languages with inferLiteralType (Java/Kotlin/C#/C++).
       // Only used when multiple candidates survive arity filtering — ~1-3% of calls.
       const langConfig = provider.typeConfig;
@@ -1199,6 +1293,7 @@ export const processCalls = async (
         widenCache,
         undefined,
         heritageMap,
+        dispatchDecision,
       );
 
       if (!resolved) return;
@@ -1737,11 +1832,20 @@ const resolveCallTarget = (
   widenCache?: WidenCache,
   preComputedArgTypes?: (string | undefined)[],
   heritageMap?: HeritageMap,
+  dispatchDecision?: DispatchDecision,
 ): ResolveResult | null => {
   const tiered = ctx.resolve(call.calledName, currentFile);
   if (!tiered) return null;
 
-  if (call.callForm === 'free') {
+  // DAG dispatch: use decision.primary to pick the resolver branch.
+  // Callers that own the DAG (processCalls + crossFile deferred paths)
+  // pass a decision; other callers use the shared default ladder.
+  // Language-specific primary / fallback / ancestryView overrides come from
+  // the provider's `selectDispatch` hook.
+  const decision = dispatchDecision ?? defaultDispatchDecision(call.callForm);
+  const primary = decision.primary;
+
+  if (primary === 'free') {
     return resolveFreeCall(
       call.calledName,
       currentFile,
@@ -1752,7 +1856,7 @@ const resolveCallTarget = (
       preComputedArgTypes,
     );
   }
-  if (call.callForm === 'constructor') {
+  if (primary === 'constructor') {
     return (
       resolveStaticCall(
         call.calledName,
@@ -1765,6 +1869,7 @@ const resolveCallTarget = (
       ) ?? singleCandidate(tiered, call.argCount, 'constructor')
     );
   }
+  // primary === 'owner-scoped'
   if (call.receiverTypeName) {
     // Skip the owner-scoped MRO path when the tiered pool has genuine
     // overload ambiguity that needs D1-D4+E handling, not D0.
@@ -1772,6 +1877,15 @@ const resolveCallTarget = (
       (!!overloadHints || !!preComputedArgTypes) &&
       countCallableCandidates(tiered.candidates, call.argCount, call.callForm) > 1;
     // Try owner-scoped (resolveMemberCall) then file-scoped (resolveMemberCallByFile).
+    // DAG: dispatchDecision.ancestryView selects instance vs singleton ancestry
+    // for kind-aware MRO strategies. Ruby `Account.log` flows via 'singleton'.
+    //
+    // Singleton-ancestry miss MUST NOT degrade to the file-scoped fallback:
+    // resolveMemberCallByFile matches by ownerId and would happily pick an
+    // instance method defined on the same class, leaking instance dispatch
+    // onto what was declared a class-method call. For singleton dispatch,
+    // a miss either null-routes or falls through to `decision.fallback`.
+    const singletonDispatch = decision.ancestryView === 'singleton';
     const memberResult =
       (!skipMember
         ? resolveMemberCall(
@@ -1781,18 +1895,21 @@ const resolveCallTarget = (
             ctx,
             heritageMap,
             call.argCount,
+            decision.ancestryView,
           )
         : null) ??
-      resolveMemberCallByFile(
-        call.calledName,
-        call.receiverTypeName,
-        currentFile,
-        ctx,
-        call.argCount,
-        call.callForm,
-        overloadHints,
-        preComputedArgTypes,
-      );
+      (singletonDispatch
+        ? null
+        : resolveMemberCallByFile(
+            call.calledName,
+            call.receiverTypeName,
+            currentFile,
+            ctx,
+            call.argCount,
+            call.callForm,
+            overloadHints,
+            preComputedArgTypes,
+          ));
     if (memberResult) return memberResult;
 
     // Module-alias narrowing runs as a FALLBACK, after owner/file-scoped
@@ -1828,7 +1945,26 @@ const resolveCallTarget = (
     // hierarchy. When the type is NOT in the index (PHP `mixed`, dynamic
     // types, unresolvable aliases), the scoped resolvers had nothing to
     // work with and singleCandidate is the correct last resort.
+    //
+    // DAG fallback override: when `select-dispatch` returned
+    // `fallback: 'free-arity-narrowed'` (today: Ruby implicit-self bare
+    // calls whose enclosing class doesn't define the method), fall through
+    // to free-call resolution instead of null-routing. This preserves
+    // existing free-call arity-narrowing heuristics for bare calls that
+    // happen to target methods on unrelated classes.
     if (typeResolves && typeResolves.candidates.length > 0) {
+      if (decision.fallback === 'free-arity-narrowed') {
+        const free = resolveFreeCall(
+          call.calledName,
+          currentFile,
+          ctx,
+          call.argCount,
+          tiered,
+          overloadHints,
+          preComputedArgTypes,
+        );
+        if (free) return free;
+      }
       return null; // null-route: type resolved, no candidate matched
     }
     return singleCandidate(tiered, call.argCount, call.callForm);
@@ -2024,6 +2160,13 @@ const resolveMethodByOwner = (
   ctx: ResolutionContext,
   heritageMap?: HeritageMap,
   argCount?: number,
+  /**
+   * DAG-sourced ancestry selector. `'singleton'` routes through
+   * `heritageMap.getSingletonAncestry(owner)` for class-method dispatch
+   * (Ruby `Account.log` via `extend LoggerMixin`). Default / undefined
+   * uses the walker's instance-dispatch behavior.
+   */
+  ancestryView?: 'instance' | 'singleton',
 ): { def: SymbolDefinition; tier: ResolutionTier } | undefined => {
   const typeResolved = ctx.resolve(receiverTypeName, filePath);
   if (!typeResolved) return undefined;
@@ -2052,6 +2195,14 @@ const resolveMethodByOwner = (
   let ambiguous = false;
   for (const candidate of typeResolved.candidates) {
     if (!CLASS_LIKE_TYPES.has(candidate.type)) continue;
+    // Singleton dispatch: when the DAG decision requested the singleton
+    // ancestry view, pass `heritageMap.getSingletonAncestry` as the walker's
+    // ancestry override. Kind-aware strategies (e.g. MroStrategy 'ruby-mixin')
+    // honor the override by scanning it linearly in place of their default walk.
+    const singletonOverride =
+      ancestryView === 'singleton' && canWalkMRO && heritageMap
+        ? heritageMap.getSingletonAncestry(candidate.nodeId).map((e) => e.parentId)
+        : undefined;
     const def = canWalkMRO
       ? lookupMethodByOwnerWithMRO(
           candidate.nodeId,
@@ -2060,6 +2211,7 @@ const resolveMethodByOwner = (
           ctx.model,
           mroStrategy,
           argCount,
+          singletonOverride,
         )
       : ctx.model.methods.lookupMethodByOwner(candidate.nodeId, methodName, argCount);
     if (!def) continue;
@@ -2114,6 +2266,7 @@ export const resolveMemberCall = (
   ctx: ResolutionContext,
   heritageMap?: HeritageMap,
   argCount?: number,
+  ancestryView?: 'instance' | 'singleton',
 ): ResolveResult | null => {
   const resolved = resolveMethodByOwner(
     ownerType,
@@ -2122,6 +2275,7 @@ export const resolveMemberCall = (
     ctx,
     heritageMap,
     argCount,
+    ancestryView,
   );
   if (!resolved) return null;
   return toResolveResult(resolved.def, resolved.tier);
@@ -2580,6 +2734,11 @@ export const processCallsFromExtracted = async (
       await yieldToEventLoop();
     }
 
+    // Registry-primary gate: skip Python (etc.) entirely when the
+    // scope-based phase owns CALLS for this language.
+    const fileLanguage = getLanguageFromFilename(filePath);
+    if (fileLanguage && isRegistryPrimary(fileLanguage)) continue;
+
     ctx.enableCache(filePath);
     const widenCache: WidenCache = new Map();
     const receiverMap = fileReceiverTypes.get(filePath);

gitnexus/src/core/ingestion/call-routing.ts

@@ -1,10 +1,14 @@
 /**
  * Shared Ruby call routing logic.
  *
- * Ruby expresses imports, heritage (mixins), and property definitions as
- * method calls rather than syntax-level constructs. This module provides a
- * routing function used by the CLI call-processor, CLI parse-worker, and
- * the web call-processor so that the classification logic lives in one place.
+ * Ruby expresses imports and property definitions as method calls rather
+ * than syntax-level constructs. This module provides a routing function
+ * used by the CLI call-processor, CLI parse-worker, and the web
+ * call-processor so that the classification logic lives in one place.
+ *
+ * Heritage (mixins: include/extend/prepend) was previously routed here
+ * but is now handled by heritageExtractor.extractFromCall before the
+ * call router runs.  The router still returns 'skip' for these calls.
  *
  * NOTE: This file is intentionally duplicated in gitnexus-web/ because the
  * two packages have separate build targets (Node native vs WASM/browser).
@@ -30,17 +34,10 @@ export type CallRouter = (calledName: string, callNode: SyntaxNode) => CallRouti
 
 export type RubyCallRouting =
   | { kind: 'import'; importPath: string; isRelative: boolean }
-  | { kind: 'heritage'; items: RubyHeritageItem[] }
   | { kind: 'properties'; items: RubyPropertyItem[] }
   | { kind: 'call' }
   | { kind: 'skip' };
 
-export interface RubyHeritageItem {
-  enclosingClass: string;
-  mixinName: string;
-  heritageKind: 'include' | 'extend' | 'prepend';
-}
-
 export type RubyAccessorType = 'attr_accessor' | 'attr_reader' | 'attr_writer';
 
 export interface RubyPropertyItem {
@@ -56,9 +53,6 @@ export interface RubyPropertyItem {
 const CALL_RESULT: RubyCallRouting = { kind: 'call' };
 const SKIP_RESULT: RubyCallRouting = { kind: 'skip' };
 
-/** Max depth for parent-walking loops to prevent pathological AST traversals */
-const MAX_PARENT_DEPTH = 50;
-
 // ── Routing function ────────────────────────────────────────────────────────
 
 /**
@@ -88,35 +82,12 @@ export function routeRubyCall(calledName: string, callNode: SyntaxNode): RubyCal
     return { kind: 'import', importPath, isRelative };
   }
 
-  // ── include / extend / prepend → heritage (mixin) ──────────────────────
+  // ── include / extend / prepend — heritage (now handled by heritageExtractor) ─
+  // Call-based heritage is intercepted by heritageExtractor.extractFromCall
+  // before the call router runs.  Return SKIP_RESULT so these calls don't
+  // fall through to normal call processing.
   if (calledName === 'include' || calledName === 'extend' || calledName === 'prepend') {
-    let enclosingClass: string | null = null;
-    let current = callNode.parent;
-    let depth = 0;
-    while (current && ++depth <= MAX_PARENT_DEPTH) {
-      if (current.type === 'class' || current.type === 'module') {
-        const nameNode = current.childForFieldName?.('name');
-        if (nameNode) {
-          enclosingClass = nameNode.text;
-          break;
-        }
-      }
-      current = current.parent;
-    }
-    if (!enclosingClass) return SKIP_RESULT;
-
-    const items: RubyHeritageItem[] = [];
-    const argList = callNode.childForFieldName?.('arguments');
-    for (const arg of argList?.children ?? []) {
-      if (arg.type === 'constant' || arg.type === 'scope_resolution') {
-        items.push({
-          enclosingClass,
-          mixinName: arg.text,
-          heritageKind: calledName as 'include' | 'extend' | 'prepend',
-        });
-      }
-    }
-    return items.length > 0 ? { kind: 'heritage', items } : SKIP_RESULT;
+    return SKIP_RESULT;
   }
 
   // ── attr_accessor / attr_reader / attr_writer → property definitions ───

gitnexus/src/core/ingestion/call-types.ts

@@ -78,3 +78,100 @@ export interface CallExtractionConfig {
    */
   typeAsReceiverHeuristic?: boolean;
 }
+
+// ---------------------------------------------------------------------------
+// Call-resolution DAG types
+// ---------------------------------------------------------------------------
+//
+// The call-resolution pipeline is a typed DAG:
+//
+//   extract-call  ──▶  classify-form  ──▶  infer-receiver  ──▶  select-dispatch  ──▶  resolve-target  ──▶  emit-edge
+//
+// Provider hooks plug in at infer-receiver and select-dispatch; shared stages
+// stay language-agnostic. Stages 1-2 run in the parse worker; stages 3-6 run
+// on the main thread. DAG-internal types below are main-thread-only and never
+// serialize to the graph.
+
+/**
+ * DAG stage 3 output: call record with receiver type and source discriminant.
+ *
+ * `receiverTypeName` is resolved via TypeEnv → constructor-map → class-as-receiver →
+ * mixed-chain, or synthesized by `inferImplicitReceiver`. `receiverSource` tags
+ * which path won and drives MRO strategy selection in stage 4.
+ *
+ * Invariants:
+ * - `receiverSource` MUST match how `receiverTypeName` was resolved; every
+ *   discriminant must have a live reader and writer.
+ * - `hint` is opaque to shared stages; only the same provider's `selectDispatch` reads it.
+ *
+ * @see language-provider.ts § inferImplicitReceiver, selectDispatch
+ */
+export interface ReceiverEnriched {
+  readonly calledName: string;
+  readonly callForm: 'free' | 'member' | 'constructor' | undefined;
+  readonly receiverName: string | undefined;
+  readonly receiverTypeName: string | undefined;
+  readonly receiverSource:
+    | 'none'
+    | 'typed-binding'
+    | 'constructor-map'
+    | 'class-as-receiver'
+    | 'mixed-chain'
+    | 'implicit-self';
+  /** Free-form hint from the provider hook; opaque to shared stages. */
+  readonly hint?: string;
+}
+
+/**
+ * Provider hook output for `LanguageProvider.inferImplicitReceiver` (DAG stage 3).
+ *
+ * Overlay applied to `ReceiverEnriched` when an implicit receiver is synthesized.
+ * Ruby example: bare `serialize` inside `Account#call_serialize` →
+ * `{ callForm: 'member', receiverName: 'self', receiverTypeName: 'Account',
+ *   receiverSource: 'implicit-self', hint: 'instance' }`
+ *
+ * Invariants:
+ * - `receiverSource` is always `'implicit-self'` — the only variant this type produces.
+ * - `callForm` is always `'member'` — the rewrite converts bare-call to method invocation.
+ * - `hint` is opaque to shared stages; consumed by the same language's `selectDispatch`.
+ */
+export interface ImplicitReceiverOverride {
+  readonly callForm: 'free' | 'member' | 'constructor';
+  readonly receiverName: string;
+  readonly receiverTypeName: string;
+  readonly receiverSource: Extract<ReceiverEnriched['receiverSource'], 'implicit-self'>;
+  /** Free-form language tag (e.g. Ruby sets 'singleton' for `def self.foo`
+   *  method bodies). Consumed by the same language's `selectDispatch` hook. */
+  readonly hint?: string;
+}
+
+/**
+ * DAG stage 4 output: dispatch strategy for resolving the target method.
+ *
+ * Encodes which resolver branch to try first and an optional fallback.
+ * Stage 5 delegates to `resolveMemberCall`, `resolveFreeCall`, or
+ * `resolveStaticCall` based on `primary`.
+ *
+ * - `primary`: `'owner-scoped'` = MRO walk, `'free'` = arity-tiered global lookup,
+ *   `'constructor'` = type instantiation.
+ * - `fallback`: Only `'free-arity-narrowed'` exists; used by Ruby implicit-self
+ *   to degrade to arity-tiered free lookup when the MRO walk misses.
+ * - `ancestryView`: Ruby `'ruby-mixin'` only. `'singleton'` walks extend providers
+ *   only; a miss NEVER falls through to file-scoped lookup (enforced in
+ *   resolveCallTarget). `'instance'` is the default.
+ *
+ * Common patterns:
+ *   - `{primary: 'constructor'}` — constructor call
+ *   - `{primary: 'owner-scoped'}` — member call with known type
+ *   - `{primary: 'owner-scoped', fallback: 'free-arity-narrowed', ancestryView: 'instance'}` — Ruby implicit-self
+ *   - `{primary: 'owner-scoped', ancestryView: 'singleton'}` — Ruby class-method call
+ *
+ * @see language-provider.ts § selectDispatch
+ * @see call-processor.ts § defaultDispatchDecision, resolveCallTarget
+ */
+export interface DispatchDecision {
+  readonly primary: 'owner-scoped' | 'free' | 'constructor';
+  readonly fallback?: 'free-arity-narrowed';
+  readonly ancestryView?: 'instance' | 'singleton';
+  readonly hint?: string;
+}

gitnexus/src/core/ingestion/emit-references.ts

@@ -0,0 +1,299 @@
+/**
+ * Phase 5 of the RFC #909 ingestion lifecycle: drain `ReferenceIndex`
+ * into the knowledge graph as labeled edges with `confidence` and
+ * `evidence` properties (Ring 2 PKG #925).
+ *
+ * The resolution phase (future PR) writes `Reference` records into
+ * `model.scopes.referenceSites`-derived `ReferenceIndex`; this module
+ * materializes those records as `GraphRelationship`s via
+ * `graph.addRelationship`. Every emitted edge carries:
+ *
+ *   - `type`: one of `'CALLS' | 'ACCESSES' | 'INHERITS' | 'USES'`
+ *     (mapped from `Reference.kind` — `'read'` and `'write'` both route
+ *     to `ACCESSES`; `'type-reference'` and `'import-use'` route to
+ *     `USES`; `'call'` stays `CALLS`; `'inherits'` stays `INHERITS`).
+ *   - `confidence`: the pre-computed confidence from the Reference record.
+ *   - `reason`: human-readable summary (`"scope-resolution: call | confidence 0.75"`).
+ *   - `evidence`: the full `ResolutionEvidence[]` trace — additive graph
+ *     property (see `GraphRelationship.evidence` in gitnexus-shared),
+ *     so queries that don't know about it are unaffected.
+ *   - `step`: carries the reference's access-kind discriminant when
+ *     available (`1` for read, `2` for write) so `ACCESSES` edges retain
+ *     the read/write distinction without forcing a new edge type.
+ *
+ * ## Optional scope-tree flush
+ *
+ * When `INGESTION_EMIT_SCOPES=1` is set, this module also emits:
+ *
+ *   - `Scope` nodes for every `Scope` in the tree
+ *   - `CONTAINS` edges from parent scope to child scope
+ *   - `DEFINES` edges from scope to its `ownedDefs` members
+ *   - `IMPORTS` edges from scope to `targetModuleScope` of each finalized
+ *     `ImportEdge` that carries one
+ *
+ * Off by default — existing queries that don't know about `Scope` nodes
+ * continue to work, and the storage cost is opt-in.
+ *
+ * ## Source-of-truth: the caller def for a reference
+ *
+ * A `Reference` says "some code inside `fromScope` references `toDef`".
+ * The graph wants `(callerNodeId, calleeNodeId)`. We resolve the caller
+ * by walking up the scope tree from `fromScope` until we find a scope
+ * whose `ownedDefs` contains a Function-like def. If no such ancestor
+ * exists, the edge is attributed to the first def owned by the innermost
+ * ancestor scope, and if THAT produces nothing either the edge is
+ * skipped (with a count returned in `EmitStats.skippedNoCaller`).
+ */
+
+import type {
+  NodeLabel,
+  RelationshipType,
+  Reference,
+  ReferenceIndex,
+  ResolutionEvidence,
+  Scope,
+  ScopeId,
+  SymbolDefinition,
+} from 'gitnexus-shared';
+import type { KnowledgeGraph } from '../graph/types.js';
+import type { ScopeResolutionIndexes } from './model/scope-resolution-indexes.js';
+
+// ─── Public API ─────────────────────────────────────────────────────────────
+
+export interface EmitStats {
+  readonly edgesEmitted: number;
+  /** References dropped because no caller def could be resolved. */
+  readonly skippedNoCaller: number;
+  /** References dropped because `toDef` was not found in the DefIndex. */
+  readonly skippedMissingTarget: number;
+  /** Scope nodes emitted — `0` unless `INGESTION_EMIT_SCOPES=1`. */
+  readonly scopeNodesEmitted: number;
+  /** Scope-tree structural edges emitted — `0` unless `INGESTION_EMIT_SCOPES=1`. */
+  readonly scopeEdgesEmitted: number;
+}
+
+export interface EmitReferencesInput {
+  readonly graph: KnowledgeGraph;
+  readonly scopes: ScopeResolutionIndexes;
+  readonly referenceIndex: ReferenceIndex;
+  /** Human-consumable label for the `reason` prefix. Defaults to `'scope-resolution'`. */
+  readonly sourceLabel?: string;
+}
+
+/**
+ * Drain `referenceIndex.bySourceScope` into graph edges.
+ *
+ * The scope-tree flush is controlled separately by
+ * `INGESTION_EMIT_SCOPES` — callers can run `emitReferencesToGraph`
+ * without scope-node emission or layer the two calls as needed.
+ */
+export function emitReferencesToGraph(input: EmitReferencesInput): EmitStats {
+  const { graph, scopes, referenceIndex } = input;
+  const sourceLabel = input.sourceLabel ?? 'scope-resolution';
+
+  let edgesEmitted = 0;
+  let skippedNoCaller = 0;
+  let skippedMissingTarget = 0;
+
+  for (const [fromScope, refs] of referenceIndex.bySourceScope) {
+    for (const ref of refs) {
+      const targetDef = scopes.defs.get(ref.toDef);
+      if (targetDef === undefined) {
+        skippedMissingTarget++;
+        continue;
+      }
+      const callerId = resolveCallerNodeId(fromScope, scopes);
+      if (callerId === undefined) {
+        skippedNoCaller++;
+        continue;
+      }
+      graph.addRelationship(buildRelationship(ref, callerId, targetDef, sourceLabel));
+      edgesEmitted++;
+    }
+  }
+
+  const scopeStats = isScopeEmissionEnabled()
+    ? emitScopeGraph({ graph, scopes })
+    : { scopeNodesEmitted: 0, scopeEdgesEmitted: 0 };
+
+  return { edgesEmitted, skippedNoCaller, skippedMissingTarget, ...scopeStats };
+}
+
+/**
+ * Emit `Scope` nodes + `CONTAINS`/`DEFINES`/`IMPORTS` edges representing
+ * the lexical scope tree itself. Skipped unless `INGESTION_EMIT_SCOPES=1`
+ * at the public entry point; exported here for tests that want to
+ * exercise the path directly.
+ */
+export function emitScopeGraph(input: {
+  readonly graph: KnowledgeGraph;
+  readonly scopes: ScopeResolutionIndexes;
+}): { readonly scopeNodesEmitted: number; readonly scopeEdgesEmitted: number } {
+  const { graph, scopes } = input;
+  let scopeNodesEmitted = 0;
+  let scopeEdgesEmitted = 0;
+
+  for (const scope of scopes.scopeTree.byId.values()) {
+    graph.addNode({
+      id: scope.id,
+      label: 'CodeElement' as NodeLabel, // the generic bucket for non-symbol graph nodes
+      properties: {
+        name: scope.kind,
+        filePath: scope.filePath,
+        startLine: scope.range.startLine,
+        endLine: scope.range.endLine,
+        description: `Scope: ${scope.kind}`,
+      } as unknown as Parameters<KnowledgeGraph['addNode']>[0]['properties'],
+    });
+    scopeNodesEmitted++;
+
+    if (scope.parent !== null) {
+      graph.addRelationship({
+        id: `rel:contains:${scope.parent}->${scope.id}`,
+        sourceId: scope.parent,
+        targetId: scope.id,
+        type: 'CONTAINS',
+        confidence: 1,
+        reason: 'scope-tree parent/child',
+      });
+      scopeEdgesEmitted++;
+    }
+
+    for (const def of scope.ownedDefs) {
+      graph.addRelationship({
+        id: `rel:defines:${scope.id}->${def.nodeId}`,
+        sourceId: scope.id,
+        targetId: def.nodeId,
+        type: 'DEFINES',
+        confidence: 1,
+        reason: 'scope.ownedDefs',
+      });
+      scopeEdgesEmitted++;
+    }
+  }
+
+  for (const [scopeId, edges] of scopes.imports) {
+    for (const edge of edges) {
+      if (edge.targetModuleScope === undefined) continue;
+      graph.addRelationship({
+        id: `rel:imports:${scopeId}->${edge.targetModuleScope}:${edge.localName}`,
+        sourceId: scopeId,
+        targetId: edge.targetModuleScope,
+        type: 'IMPORTS',
+        confidence: edge.linkStatus === 'unresolved' ? 0.5 : 1,
+        reason: `import ${edge.kind} ${edge.localName}`,
+      });
+      scopeEdgesEmitted++;
+    }
+  }
+
+  return { scopeNodesEmitted, scopeEdgesEmitted };
+}
+
+// ─── Internal ───────────────────────────────────────────────────────────────
+
+/** Accepted truthy values for `INGESTION_EMIT_SCOPES`. */
+const TRUTHY: ReadonlySet<string> = new Set(['true', '1', 'yes']);
+
+function isScopeEmissionEnabled(): boolean {
+  const raw = process.env['INGESTION_EMIT_SCOPES'];
+  if (raw === undefined) return false;
+  return TRUTHY.has(raw.trim().toLowerCase());
+}
+
+/**
+ * Walk up from `startScope` looking for the first ancestor scope whose
+ * `ownedDefs` contains a Function-like def (Function / Method /
+ * Constructor). Fall back to the innermost ancestor's first `ownedDef`
+ * if none is found; return `undefined` if all ancestors have no defs.
+ */
+function resolveCallerNodeId(
+  startScope: ScopeId,
+  scopes: ScopeResolutionIndexes,
+): string | undefined {
+  const tree = scopes.scopeTree;
+  let current: ScopeId | null = startScope;
+  const visited = new Set<ScopeId>();
+  let firstOwnedFallback: string | undefined;
+
+  while (current !== null) {
+    if (visited.has(current)) break;
+    visited.add(current);
+
+    const scope: Scope | undefined = tree.getScope(current);
+    if (scope === undefined) break;
+
+    // Prefer a Function-like owner.
+    const fnDef = scope.ownedDefs.find((d) => isFunctionLike(d.type));
+    if (fnDef !== undefined) return fnDef.nodeId;
+
+    // Stash the first owned def we see as a conservative fallback.
+    if (firstOwnedFallback === undefined && scope.ownedDefs.length > 0) {
+      firstOwnedFallback = scope.ownedDefs[0]!.nodeId;
+    }
+
+    current = scope.parent;
+  }
+
+  return firstOwnedFallback;
+}
+
+function isFunctionLike(type: NodeLabel): boolean {
+  return type === 'Function' || type === 'Method' || type === 'Constructor';
+}
+
+function buildRelationship(
+  ref: Reference,
+  callerId: string,
+  targetDef: SymbolDefinition,
+  sourceLabel: string,
+): Parameters<KnowledgeGraph['addRelationship']>[0] {
+  const type = mapKindToType(ref.kind);
+  const reason = `${sourceLabel}: ${ref.kind} | confidence ${ref.confidence.toFixed(3)}`;
+  // `step` encodes read/write discriminator for ACCESSES edges (1=read, 2=write).
+  // Other kinds omit `step`.
+  const step = ref.kind === 'read' ? 1 : ref.kind === 'write' ? 2 : undefined;
+  return {
+    id: `rel:${type}:${callerId}->${targetDef.nodeId}:${ref.atRange.startLine}:${ref.atRange.startCol}`,
+    sourceId: callerId,
+    targetId: targetDef.nodeId,
+    type,
+    confidence: ref.confidence,
+    reason,
+    evidence: ref.evidence.map(serializeEvidence),
+    ...(step !== undefined ? { step } : {}),
+  };
+}
+
+/**
+ * Map a `Reference.kind` to an existing `RelationshipType`. Read/write
+ * both fold into `ACCESSES`; `type-reference` + `import-use` both fold
+ * into `USES`. This keeps the graph schema additive — no new
+ * RelationshipType values are introduced by this module.
+ */
+function mapKindToType(kind: Reference['kind']): RelationshipType {
+  switch (kind) {
+    case 'call':
+      return 'CALLS';
+    case 'read':
+    case 'write':
+      return 'ACCESSES';
+    case 'inherits':
+      return 'INHERITS';
+    case 'type-reference':
+    case 'import-use':
+      return 'USES';
+  }
+}
+
+function serializeEvidence(e: ResolutionEvidence): {
+  readonly kind: string;
+  readonly weight: number;
+  readonly note?: string;
+} {
+  return {
+    kind: e.kind,
+    weight: e.weight,
+    ...(e.note !== undefined ? { note: e.note } : {}),
+  };
+}